RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 ODF1Q14990 250 aa14.39□□□□□ -0.11
C9orf3-215ENST00000478473 REG3GQ6UW15 175 aa14.39□□□□□ -0.11
C9orf3-215ENST00000478473 GEMIN7Q9H840 131 aaKnown RBP14.39□□□□□ -0.11
C9orf3-215ENST00000478473 TINCRA0A1B0GVN0 87 aa14.38□□□□□ -0.11
C9orf3-215ENST00000478473 PRSS2P07478 247 aa14.38□□□□□ -0.11
C9orf3-215ENST00000478473 GAGE2EQ4V326 116 aa14.38□□□□□ -0.11
C9orf3-215ENST00000478473 C6orf226Q5I0X4 101 aa14.38□□□□□ -0.11
C9orf3-215ENST00000478473 GAGE2DQ9UEU5 116 aa14.38□□□□□ -0.11
C9orf3-215ENST00000478473 KRTAP10-8P60410 259 aa14.37□□□□□ -0.11
C9orf3-215ENST00000478473 CST9LQ9H4G1 147 aa14.37□□□□□ -0.11
C9orf3-215ENST00000478473 CKS1BP61024 79 aa14.36□□□□□ -0.11
C9orf3-215ENST00000478473 C9orf129Q5T035 196 aaKnown RBP14.36□□□□□ -0.11
C9orf3-215ENST00000478473 FA2HQ7L5A8 372 aa14.36□□□□□ -0.11
C9orf3-215ENST00000478473 PLA2G2DQ9UNK4 145 aa14.36□□□□□ -0.11
C9orf3-215ENST00000478473 TOMM7Q9P0U1 55 aa14.35□□□□□ -0.11
C9orf3-215ENST00000478473 SMIM1B2RUZ4 78 aa14.34□□□□□ -0.11
C9orf3-215ENST00000478473 CXCL5P42830 114 aa14.34□□□□□ -0.11
C9orf3-215ENST00000478473 PMVKQ15126 192 aa14.34□□□□□ -0.11
C9orf3-215ENST00000478473 PDZD11Q5EBL8 140 aa14.34□□□□□ -0.11
C9orf3-215ENST00000478473 KRTAP11-1Q8IUC1 163 aa14.34□□□□□ -0.11
C9orf3-215ENST00000478473 F8VRH5 84 aa14.33□□□□□ -0.12
C9orf3-215ENST00000478473 URB1-AS1Q96HZ7 61 aa14.33□□□□□ -0.12
C9orf3-215ENST00000478473 SMCO4Q9NRQ5 59 aa14.33□□□□□ -0.12
C9orf3-215ENST00000478473 A0A096LNJ9 63 aa14.32□□□□□ -0.12
C9orf3-215ENST00000478473 SNAPINO95295 136 aa14.32□□□□□ -0.12
C9orf3-215ENST00000478473 C1orf137Q5JT78 98 aa14.32□□□□□ -0.12
C9orf3-215ENST00000478473 FAM19A5Q7Z5A7 132 aaPredicted RBP14.32□□□□□ -0.12
C9orf3-215ENST00000478473 LINC00469Q8N7U9 141 aa14.32□□□□□ -0.12
C9orf3-215ENST00000478473 C18orf32Q8TCD1 76 aa14.32□□□□□ -0.12
C9orf3-215ENST00000478473 APOC3P02656 99 aa14.31□□□□□ -0.12
C9orf3-215ENST00000478473 SVBPQ8N300 66 aa14.31□□□□□ -0.12
C9orf3-215ENST00000478473 TRAPPC1Q9Y5R8 145 aa14.31□□□□□ -0.12
C9orf3-215ENST00000478473 M0QXV9 152 aa14.3□□□□□ -0.12
C9orf3-215ENST00000478473 IGLV7-43P04211 117 aa14.3□□□□□ -0.12
C9orf3-215ENST00000478473 LINC00614P0C842 121 aa14.29□□□□□ -0.12
C9orf3-215ENST00000478473 NDUFA5Q16718 116 aa14.29□□□□□ -0.12
C9orf3-215ENST00000478473 YPEL4Q96NS1 127 aa14.27□□□□□ -0.13
C9orf3-215ENST00000478473 COX7B2Q8TF08 81 aa14.26□□□□□ -0.13
C9orf3-215ENST00000478473 IGLC3P0DOY3 106 aa14.25□□□□□ -0.13
C9orf3-215ENST00000478473 HBDP02042 147 aa14.24□□□□□ -0.13
C9orf3-215ENST00000478473 DIRC1Q969H9 104 aa14.24□□□□□ -0.13
C9orf3-215ENST00000478473 TP73-AS1Q9UF72 201 aa14.23□□□□□ -0.13
C9orf3-215ENST00000478473 IGLV5-39A0A0G2JS06 123 aa14.22□□□□□ -0.13
C9orf3-215ENST00000478473 RAB5BP61020 215 aa14.22□□□□□ -0.13
C9orf3-215ENST00000478473 XAGE1AQ9HD64 81 aa14.22□□□□□ -0.13
C9orf3-215ENST00000478473 H3BRM9 83 aa14.21□□□□□ -0.13
C9orf3-215ENST00000478473 SPINK8P0C7L1 97 aa14.21□□□□□ -0.13
C9orf3-215ENST00000478473 C22orf24Q9Y442 160 aa14.21□□□□□ -0.13
C9orf3-215ENST00000478473 H0Y9J4 135 aa14.2□□□□□ -0.14
C9orf3-215ENST00000478473 UBE2BP63146 152 aa14.2□□□□□ -0.14
C9orf3-215ENST00000478473 ATP5LO75964 103 aa14.19□□□□□ -0.14
C9orf3-215ENST00000478473 LBHQ53QV2 105 aaPredicted RBP14.18□□□□□ -0.14
C9orf3-215ENST00000478473 ZNF22P17026 224 aaPredicted RBP14.17□□□□□ -0.14
C9orf3-215ENST00000478473 NUPR1O60356 82 aa14.16□□□□□ -0.14
C9orf3-215ENST00000478473 PMCHL1Q16048 86 aa14.15□□□□□ -0.14
C9orf3-215ENST00000478473 IGLV5-37A0A075B6J1 123 aa14.14□□□□□ -0.15
C9orf3-215ENST00000478473 KRTAP1-4P0C5Y4 121 aa14.14□□□□□ -0.15
C9orf3-215ENST00000478473 MRPL55Q7Z7F7 128 aaKnown RBP14.14□□□□□ -0.15
C9orf3-215ENST00000478473 CHCHD1Q96BP2 118 aaKnown RBP14.14□□□□□ -0.15
C9orf3-215ENST00000478473 NDUFA6P56556 154 aa14.13□□□□□ -0.15
C9orf3-215ENST00000478473 BAGE3Q86Y29 109 aa14.12□□□□□ -0.15
C9orf3-215ENST00000478473 C11orf86A6NJI1 115 aa14.11□□□□□ -0.15
C9orf3-215ENST00000478473 ZNF861PO60384 105 aa14.11□□□□□ -0.15
C9orf3-215ENST00000478473 UBR4Q5T4S7 5183 aa14.1□□□□□ -0.15
C9orf3-215ENST00000478473 IGLV1-50A0A075B6I6 118 aa14.09□□□□□ -0.15
C9orf3-215ENST00000478473 TRAV12-1A0A0B4J245 112 aa14.08□□□□□ -0.16
C9orf3-215ENST00000478473 SFTA2Q6UW10 78 aa14.08□□□□□ -0.16
C9orf3-215ENST00000478473 PRR26Q8N8Z3 221 aa14.08□□□□□ -0.16
C9orf3-215ENST00000478473 LRP2P98164 4655 aa14.08□□□□□ -0.16
C9orf3-215ENST00000478473 COX17Q14061 63 aa14.07□□□□□ -0.16
C9orf3-215ENST00000478473 LINC00167Q96N53 147 aa14.07□□□□□ -0.16
C9orf3-215ENST00000478473 CBLN2Q8IUK8 224 aa14.06□□□□□ -0.16
C9orf3-215ENST00000478473 BCE1O60756 84 aa14.05□□□□□ -0.16
C9orf3-215ENST00000478473 ZNF625Q96I27 306 aaPredicted RBP14.05□□□□□ -0.16
C9orf3-215ENST00000478473 CHTOPQ9Y3Y2 248 aaKnown RBP14.05□□□□□ -0.16
C9orf3-215ENST00000478473 IFI27L1Q96BM0 104 aa14.04□□□□□ -0.16
C9orf3-215ENST00000478473 ERG28Q9UKR5 140 aa14.04□□□□□ -0.16
C9orf3-215ENST00000478473 TMEM170BQ5T4T1 132 aa14.03□□□□□ -0.16
C9orf3-215ENST00000478473 PFN2P35080 140 aa14.01□□□□□ -0.17
C9orf3-215ENST00000478473 SND1-IT1Q9HBX3 110 aa14.01□□□□□ -0.17
C9orf3-215ENST00000478473 TMEM223A0PJW6 202 aa14□□□□□ -0.17
C9orf3-215ENST00000478473 RPL28P46779 137 aaKnown RBP14□□□□□ -0.17
C9orf3-215ENST00000478473 RPL37AP8A6NKH3 93 aa13.99□□□□□ -0.17
C9orf3-215ENST00000478473 HSBP1O75506 76 aa13.99□□□□□ -0.17
C9orf3-215ENST00000478473 VPREB1P12018 145 aa13.99□□□□□ -0.17
C9orf3-215ENST00000478473 RPL13AP40429 203 aaKnown RBP13.99□□□□□ -0.17
C9orf3-215ENST00000478473 KRTAP13-1Q8IUC0 172 aa13.99□□□□□ -0.17
C9orf3-215ENST00000478473 NKAPP1Q8N9T2 125 aa13.99□□□□□ -0.17
C9orf3-215ENST00000478473 TRGC2P03986 189 aa13.98□□□□□ -0.17
C9orf3-215ENST00000478473 LINC00310P59036 64 aa13.96□□□□□ -0.17
C9orf3-215ENST00000478473 GAGE10A6NGK3 116 aa13.95□□□□□ -0.18
C9orf3-215ENST00000478473 FAM19A2Q8N3H0 131 aa13.95□□□□□ -0.18
C9orf3-215ENST00000478473 RPL24P83731 157 aaKnown RBP13.94□□□□□ -0.18
C9orf3-215ENST00000478473 SLC7A5P1Q8MH63 180 aa13.94□□□□□ -0.18
C9orf3-215ENST00000478473 Q8NDZ9 215 aa13.92□□□□□ -0.18
C9orf3-215ENST00000478473 COLCA2A8K830 154 aa13.91□□□□□ -0.18
C9orf3-215ENST00000478473 SCO1O75880 301 aa13.91□□□□□ -0.18
C9orf3-215ENST00000478473 SERF1AO75920 110 aa13.9□□□□□ -0.18
C9orf3-215ENST00000478473 IGKV2-28A0A075B6P5 120 aa13.88□□□□□ -0.19
C9orf3-215ENST00000478473 LEPROTL1O95214 131 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms