RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135		A0A1B0GUV1	79 aa		4.29	□□□□□ -1.72
HDAC9-223	ENST00000476135	FGF6	P10767	208 aa		4.29	□□□□□ -1.72
HDAC9-223	ENST00000476135	FABP9	Q0Z7S8	132 aa		4.29	□□□□□ -1.72
HDAC9-223	ENST00000476135	RNASEK	Q6P5S7	137 aa	Known RBP	4.29	□□□□□ -1.72
HDAC9-223	ENST00000476135	NXT2	Q9NPJ8	142 aa	Known RBP	4.29	□□□□□ -1.72
HDAC9-223	ENST00000476135	SMCO4	Q9NRQ5	59 aa		4.29	□□□□□ -1.72
HDAC9-223	ENST00000476135		K7EMI3	77 aa		4.28	□□□□□ -1.72
HDAC9-223	ENST00000476135	ESD	P10768	282 aa		4.28	□□□□□ -1.72
HDAC9-223	ENST00000476135	RPL13A	P40429	203 aa	Known RBP	4.28	□□□□□ -1.72
HDAC9-223	ENST00000476135	ORMDL2	Q53FV1	153 aa		4.28	□□□□□ -1.72
HDAC9-223	ENST00000476135	MRPL52	Q86TS9	123 aa	Known RBP	4.28	□□□□□ -1.72
HDAC9-223	ENST00000476135	LINC00269	Q8N2A0	174 aa		4.28	□□□□□ -1.72
HDAC9-223	ENST00000476135	OR5A1	Q8NGJ0	315 aa		4.28	□□□□□ -1.72
HDAC9-223	ENST00000476135	TRAV8-4	A0A0B4J246	113 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	LOC389332	A0A1B0GUA5	103 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	S100A6	P06703	90 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	G0S2	P27469	103 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	REG3A	Q06141	175 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	KIAA1644	Q3SXP7	199 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	CLPSL2	Q6UWE3	100 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	CBLN2	Q8IUK8	224 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	LINC00469	Q8N7U9	141 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135		Q8N8P6	123 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	C20orf203	Q8NBC4	194 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	SPANXA1	Q9NS26	97 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	PKIG	Q9Y2B9	76 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	TRAPPC1	Q9Y5R8	145 aa		4.27	□□□□□ -1.73
HDAC9-223	ENST00000476135	IGLV4-60	A0A075B6I1	120 aa		4.26	□□□□□ -1.73
HDAC9-223	ENST00000476135		H0Y9J4	135 aa		4.26	□□□□□ -1.73
HDAC9-223	ENST00000476135	KRTAP1-4	P0C5Y4	121 aa		4.26	□□□□□ -1.73
HDAC9-223	ENST00000476135	CRYGA	P11844	174 aa		4.26	□□□□□ -1.73
HDAC9-223	ENST00000476135	IFI27	P40305	119 aa	Predicted RBP	4.26	□□□□□ -1.73
HDAC9-223	ENST00000476135	UBE2D1	P51668	147 aa		4.26	□□□□□ -1.73
HDAC9-223	ENST00000476135	TPRXL	Q17RH7	258 aa		4.26	□□□□□ -1.73
HDAC9-223	ENST00000476135	FA2H	Q7L5A8	372 aa		4.26	□□□□□ -1.73
HDAC9-223	ENST00000476135	TIMM21	Q9BVV7	248 aa		4.26	□□□□□ -1.73
HDAC9-223	ENST00000476135	CSDC2	Q9Y534	153 aa	Known RBP	4.26	□□□□□ -1.73
HDAC9-223	ENST00000476135	IGKV3OR2-268	A0A0C4DH90	116 aa		4.25	□□□□□ -1.73
HDAC9-223	ENST00000476135	LINC01549	A6NIU2	74 aa		4.25	□□□□□ -1.73
HDAC9-223	ENST00000476135	TSPAN13	O95857	204 aa		4.25	□□□□□ -1.73
HDAC9-223	ENST00000476135	IGKV2-30	P06310	120 aa		4.25	□□□□□ -1.73
HDAC9-223	ENST00000476135	C1orf137	Q5JT78	98 aa		4.25	□□□□□ -1.73
HDAC9-223	ENST00000476135	C15orf56	Q8N910	161 aa		4.25	□□□□□ -1.73
HDAC9-223	ENST00000476135	YPEL4	Q96NS1	127 aa		4.25	□□□□□ -1.73
HDAC9-223	ENST00000476135	CYSLTR1	Q9Y271	337 aa		4.25	□□□□□ -1.73
HDAC9-223	ENST00000476135	UBE2D4	Q9Y2X8	147 aa		4.25	□□□□□ -1.73
HDAC9-223	ENST00000476135	CCL25	O15444	150 aa		4.24	□□□□□ -1.73
HDAC9-223	ENST00000476135	IGLV7-43	P04211	117 aa		4.24	□□□□□ -1.73
HDAC9-223	ENST00000476135	RAB5B	P61020	215 aa		4.24	□□□□□ -1.73
HDAC9-223	ENST00000476135	RPL39	P62891	51 aa	Known RBP	4.24	□□□□□ -1.73
HDAC9-223	ENST00000476135	MRPS36	P82909	103 aa	Known RBP	4.24	□□□□□ -1.73
HDAC9-223	ENST00000476135	SS18	Q15532	418 aa		4.24	□□□□□ -1.73
HDAC9-223	ENST00000476135	C2orf66	Q6UXQ4	117 aa		4.24	□□□□□ -1.73
HDAC9-223	ENST00000476135		Q6ZN92	141 aa		4.24	□□□□□ -1.73
HDAC9-223	ENST00000476135		Q6ZUT4	128 aa		4.24	□□□□□ -1.73
HDAC9-223	ENST00000476135	CDC42SE2	Q9NRR3	84 aa		4.24	□□□□□ -1.73
HDAC9-223	ENST00000476135	IFITM10	A6NMD0	228 aa		4.23	□□□□□ -1.73
HDAC9-223	ENST00000476135	C1orf196	B1AJZ1	125 aa		4.23	□□□□□ -1.73
HDAC9-223	ENST00000476135	CFC1B	P0CG36	223 aa		4.23	□□□□□ -1.73
HDAC9-223	ENST00000476135	S100A1	P23297	94 aa		4.23	□□□□□ -1.73
HDAC9-223	ENST00000476135	CTAG1A	P78358	180 aa		4.23	□□□□□ -1.73
HDAC9-223	ENST00000476135	C18orf32	Q8TCD1	76 aa		4.23	□□□□□ -1.73
HDAC9-223	ENST00000476135	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	4.23	□□□□□ -1.73
HDAC9-223	ENST00000476135	TMEM141	Q96I45	108 aa		4.23	□□□□□ -1.73
HDAC9-223	ENST00000476135	C2orf88	Q9BSF0	95 aa		4.23	□□□□□ -1.73
HDAC9-223	ENST00000476135	PYGO1	Q9Y3Y4	419 aa		4.23	□□□□□ -1.73
HDAC9-223	ENST00000476135	IGLV4-3	A0A075B6K6	122 aa		4.22	□□□□□ -1.73
HDAC9-223	ENST00000476135	TRAV13-1	A0A0B4J241	112 aa		4.22	□□□□□ -1.73
HDAC9-223	ENST00000476135	LINC00959	A0A1B0GUT2	108 aa		4.22	□□□□□ -1.73
HDAC9-223	ENST00000476135	LINC01546	A6NGU7	62 aa		4.22	□□□□□ -1.73
HDAC9-223	ENST00000476135	XCL1	P47992	114 aa		4.22	□□□□□ -1.73
HDAC9-223	ENST00000476135	HIGD2B	Q4VC39	106 aa		4.22	□□□□□ -1.73
HDAC9-223	ENST00000476135	TEX43	Q6ZNM6	134 aa		4.22	□□□□□ -1.73
HDAC9-223	ENST00000476135	TOMM6	Q96B49	74 aa		4.22	□□□□□ -1.73
HDAC9-223	ENST00000476135	TIMM17A	Q99595	171 aa		4.22	□□□□□ -1.73
HDAC9-223	ENST00000476135	GVQW2	A0A096LPI5	108 aa	Predicted RBP	4.21	□□□□□ -1.74
HDAC9-223	ENST00000476135	COX7A2L	O14548	114 aa		4.21	□□□□□ -1.74
HDAC9-223	ENST00000476135	HBD	P02042	147 aa		4.21	□□□□□ -1.74
HDAC9-223	ENST00000476135	TRGC2	P03986	189 aa		4.21	□□□□□ -1.74
HDAC9-223	ENST00000476135	LINC00614	P0C842	121 aa		4.21	□□□□□ -1.74
HDAC9-223	ENST00000476135	RNASE13	Q5GAN3	156 aa	Known RBP	4.21	□□□□□ -1.74
HDAC9-223	ENST00000476135	URB1-AS1	Q96HZ7	61 aa		4.21	□□□□□ -1.74
HDAC9-223	ENST00000476135	SCGB3A1	Q96QR1	104 aa		4.21	□□□□□ -1.74
HDAC9-223	ENST00000476135		A0A1W2PNN7	141 aa		4.2	□□□□□ -1.74
HDAC9-223	ENST00000476135	COLCA2	A8K830	154 aa		4.2	□□□□□ -1.74
HDAC9-223	ENST00000476135	SCO1	O75880	301 aa		4.2	□□□□□ -1.74
HDAC9-223	ENST00000476135	SEC11A	P67812	179 aa		4.2	□□□□□ -1.74
HDAC9-223	ENST00000476135	BAGE3	Q86Y29	109 aa		4.2	□□□□□ -1.74
HDAC9-223	ENST00000476135	LINC00518	Q8N0U6	118 aa		4.2	□□□□□ -1.74
HDAC9-223	ENST00000476135	MPLKIP	Q8TAP9	179 aa		4.2	□□□□□ -1.74
HDAC9-223	ENST00000476135	CHCHD1	Q96BP2	118 aa	Known RBP	4.2	□□□□□ -1.74
HDAC9-223	ENST00000476135	IGHV1-58	A0A0C4DH39	117 aa		4.19	□□□□□ -1.74
HDAC9-223	ENST00000476135	IGIP	A6NJ69	53 aa		4.19	□□□□□ -1.74
HDAC9-223	ENST00000476135	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	4.19	□□□□□ -1.74
HDAC9-223	ENST00000476135	HSBP1	O75506	76 aa		4.19	□□□□□ -1.74
HDAC9-223	ENST00000476135	APOM	O95445	188 aa		4.19	□□□□□ -1.74
HDAC9-223	ENST00000476135	ASB16-AS1	Q495Z4	193 aa		4.19	□□□□□ -1.74
HDAC9-223	ENST00000476135	AMELX	Q99217	191 aa		4.19	□□□□□ -1.74
HDAC9-223	ENST00000476135	OPRPN	Q99935	248 aa	Predicted RBP	4.19	□□□□□ -1.74
HDAC9-223	ENST00000476135	KRTAP4-1	Q9BYQ7	146 aa		4.19	□□□□□ -1.74

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