RNA–Protein interactions for RNA: ENST00000468807.1

TTC28-204, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-204ENST00000468807 FAM19A3Q7Z5A8 133 aa13.25□□□□□ -0.29
TTC28-204ENST00000468807 Q8IZM0 81 aa13.25□□□□□ -0.29
TTC28-204ENST00000468807 TOMM6Q96B49 74 aa13.25□□□□□ -0.29
TTC28-204ENST00000468807 TIMM17AQ99595 171 aa13.25□□□□□ -0.29
TTC28-204ENST00000468807 CDKN2A-AS1Q9UH64 79 aa13.25□□□□□ -0.29
TTC28-204ENST00000468807 SCGB3A1Q96QR1 104 aa13.24□□□□□ -0.29
TTC28-204ENST00000468807 H0Y9J4 135 aa13.23□□□□□ -0.29
TTC28-204ENST00000468807 S100PP25815 95 aa13.23□□□□□ -0.29
TTC28-204ENST00000468807 TRAV9-1A0A075B6T8 112 aa13.22□□□□□ -0.29
TTC28-204ENST00000468807 PRR26Q8N8Z3 221 aa13.22□□□□□ -0.29
TTC28-204ENST00000468807 ERASQ7Z444 233 aa13.21□□□□□ -0.29
TTC28-204ENST00000468807 XAGE1AQ9HD64 81 aa13.2□□□□□ -0.3
TTC28-204ENST00000468807 F8VRH5 84 aa13.19□□□□□ -0.3
TTC28-204ENST00000468807 IFITM2Q01629 132 aa13.18□□□□□ -0.3
TTC28-204ENST00000468807 SEC11CQ9BY50 192 aa13.18□□□□□ -0.3
TTC28-204ENST00000468807 GNB1LQ9BYB4 327 aa13.18□□□□□ -0.3
TTC28-204ENST00000468807 C22orf24Q9Y442 160 aa13.17□□□□□ -0.3
TTC28-204ENST00000468807 SMIM1B2RUZ4 78 aa13.15□□□□□ -0.3
TTC28-204ENST00000468807 CXCL5P42830 114 aa13.15□□□□□ -0.3
TTC28-204ENST00000468807 FA2HQ7L5A8 372 aa13.15□□□□□ -0.3
TTC28-204ENST00000468807 COMMD7Q86VX2 200 aa13.15□□□□□ -0.3
TTC28-204ENST00000468807 SMCO4Q9NRQ5 59 aa13.15□□□□□ -0.3
TTC28-204ENST00000468807 TINCRA0A1B0GVN0 87 aa13.14□□□□□ -0.31
TTC28-204ENST00000468807 FABP9Q0Z7S8 132 aa13.14□□□□□ -0.31
TTC28-204ENST00000468807 LBHQ53QV2 105 aaPredicted RBP13.14□□□□□ -0.31
TTC28-204ENST00000468807 COX7B2Q8TF08 81 aa13.14□□□□□ -0.31
TTC28-204ENST00000468807 MRPL18Q9H0U6 180 aaKnown RBP13.14□□□□□ -0.31
TTC28-204ENST00000468807 LINC01549A6NIU2 74 aa13.13□□□□□ -0.31
TTC28-204ENST00000468807 COX19Q49B96 90 aa13.12□□□□□ -0.31
TTC28-204ENST00000468807 PDZD11Q5EBL8 140 aa13.12□□□□□ -0.31
TTC28-204ENST00000468807 CST9LQ9H4G1 147 aa13.12□□□□□ -0.31
TTC28-204ENST00000468807 IGLV1-50A0A075B6I6 118 aa13.11□□□□□ -0.31
TTC28-204ENST00000468807 LINC01546A6NGU7 62 aa13.11□□□□□ -0.31
TTC28-204ENST00000468807 SPINK8P0C7L1 97 aa13.11□□□□□ -0.31
TTC28-204ENST00000468807 RPS10P5Q9NQ39 176 aa13.11□□□□□ -0.31
TTC28-204ENST00000468807 LPAP08519 4548 aa13.1□□□□□ -0.31
TTC28-204ENST00000468807 KRTAP1-4P0C5Y4 121 aa13.1□□□□□ -0.31
TTC28-204ENST00000468807 PMVKQ15126 192 aa13.1□□□□□ -0.31
TTC28-204ENST00000468807 MRPL55Q7Z7F7 128 aaKnown RBP13.1□□□□□ -0.31
TTC28-204ENST00000468807 IGLV5-45A0A087WSX0 123 aa13.09□□□□□ -0.31
TTC28-204ENST00000468807 NUPR1O60356 82 aa13.09□□□□□ -0.31
TTC28-204ENST00000468807 RAB5BP61020 215 aa13.09□□□□□ -0.31
TTC28-204ENST00000468807 ZNF861PO60384 105 aa13.08□□□□□ -0.32
TTC28-204ENST00000468807 NDUFA6P56556 154 aa13.07□□□□□ -0.32
TTC28-204ENST00000468807 RHEBQ15382 184 aa13.07□□□□□ -0.32
TTC28-204ENST00000468807 H3BRM9 83 aa13.06□□□□□ -0.32
TTC28-204ENST00000468807 TP73-AS1Q9UF72 201 aa13.06□□□□□ -0.32
TTC28-204ENST00000468807 GAGE10A6NGK3 116 aa13.05□□□□□ -0.32
TTC28-204ENST00000468807 RPL13AP40429 203 aaKnown RBP13.05□□□□□ -0.32
TTC28-204ENST00000468807 RPL37AP8A6NKH3 93 aa13.04□□□□□ -0.32
TTC28-204ENST00000468807 ATP5LO75964 103 aa13.03□□□□□ -0.32
TTC28-204ENST00000468807 C10orf91Q5T1B1 145 aa13.03□□□□□ -0.32
TTC28-204ENST00000468807 LINC00167Q96N53 147 aa13.03□□□□□ -0.32
TTC28-204ENST00000468807 CARHSP1Q9Y2V2 147 aaKnown RBP13.02□□□□□ -0.33
TTC28-204ENST00000468807 TRAPPC1Q9Y5R8 145 aa13.02□□□□□ -0.33
TTC28-204ENST00000468807 BCE1O60756 84 aa13.01□□□□□ -0.33
TTC28-204ENST00000468807 RPL28P46779 137 aaKnown RBP13.01□□□□□ -0.33
TTC28-204ENST00000468807 NKAPP1Q8N9T2 125 aa13.01□□□□□ -0.33
TTC28-204ENST00000468807 IGLC3P0DOY3 106 aa12.99□□□□□ -0.33
TTC28-204ENST00000468807 PFN2P35080 140 aa12.99□□□□□ -0.33
TTC28-204ENST00000468807 PMCHL1Q16048 86 aa12.99□□□□□ -0.33
TTC28-204ENST00000468807 A0A096LNJ9 63 aa12.98□□□□□ -0.33
TTC28-204ENST00000468807 LINC00614P0C842 121 aa12.98□□□□□ -0.33
TTC28-204ENST00000468807 C18orf32Q8TCD1 76 aa12.98□□□□□ -0.33
TTC28-204ENST00000468807 HBDP02042 147 aa12.97□□□□□ -0.33
TTC28-204ENST00000468807 URB1-AS1Q96HZ7 61 aa12.97□□□□□ -0.33
TTC28-204ENST00000468807 ZNF22P17026 224 aaPredicted RBP12.96□□□□□ -0.33
TTC28-204ENST00000468807 APOC3P02656 99 aa12.95□□□□□ -0.34
TTC28-204ENST00000468807 PRR4Q16378 134 aa12.95□□□□□ -0.34
TTC28-204ENST00000468807 IGLV5-37A0A075B6J1 123 aa12.94□□□□□ -0.34
TTC28-204ENST00000468807 IGLV5-39A0A0G2JS06 123 aa12.94□□□□□ -0.34
TTC28-204ENST00000468807 SCO1O75880 301 aa12.94□□□□□ -0.34
TTC28-204ENST00000468807 UBE2AP49459 152 aa12.94□□□□□ -0.34
TTC28-204ENST00000468807 IGKV2-28A0A075B6P5 120 aa12.93□□□□□ -0.34
TTC28-204ENST00000468807 IGKV2D-28P01615 120 aa12.93□□□□□ -0.34
TTC28-204ENST00000468807 TMEM170BQ5T4T1 132 aa12.92□□□□□ -0.34
TTC28-204ENST00000468807 BAGE3Q86Y29 109 aa12.92□□□□□ -0.34
TTC28-204ENST00000468807 ZNF625Q96I27 306 aaPredicted RBP12.92□□□□□ -0.34
TTC28-204ENST00000468807 ERG28Q9UKR5 140 aa12.92□□□□□ -0.34
TTC28-204ENST00000468807 A0A087X002 238 aa12.91□□□□□ -0.34
TTC28-204ENST00000468807 TSPAN13O95857 204 aa12.91□□□□□ -0.34
TTC28-204ENST00000468807 CRYGAP11844 174 aa12.9□□□□□ -0.34
TTC28-204ENST00000468807 NDUFA5Q16718 116 aa12.9□□□□□ -0.34
TTC28-204ENST00000468807 SND1-IT1Q9HBX3 110 aa12.9□□□□□ -0.34
TTC28-204ENST00000468807 C11orf86A6NJI1 115 aa12.89□□□□□ -0.35
TTC28-204ENST00000468807 TYMSOSQ8TAI1 123 aa12.89□□□□□ -0.35
TTC28-204ENST00000468807 ANAPC11Q9NYG5 84 aa12.89□□□□□ -0.35
TTC28-204ENST00000468807 SNAPINO95295 136 aa12.88□□□□□ -0.35
TTC28-204ENST00000468807 SVBPQ8N300 66 aa12.88□□□□□ -0.35
TTC28-204ENST00000468807 VPREB1P12018 145 aa12.86□□□□□ -0.35
TTC28-204ENST00000468807 RPL24P83731 157 aaKnown RBP12.86□□□□□ -0.35
TTC28-204ENST00000468807 COX17Q14061 63 aa12.86□□□□□ -0.35
TTC28-204ENST00000468807 CHTOPQ9Y3Y2 248 aaKnown RBP12.86□□□□□ -0.35
TTC28-204ENST00000468807 KRTAP13-1Q8IUC0 172 aa12.85□□□□□ -0.35
TTC28-204ENST00000468807 PRLHP81277 87 aa12.84□□□□□ -0.35
TTC28-204ENST00000468807 FAM19A1Q7Z5A9 133 aa12.84□□□□□ -0.35
TTC28-204ENST00000468807 TMEM238C9JI98 176 aa12.83□□□□□ -0.36
TTC28-204ENST00000468807 SFTA2Q6UW10 78 aa12.83□□□□□ -0.36
TTC28-204ENST00000468807 LINC00158P58513 81 aa12.82□□□□□ -0.36
TTC28-204ENST00000468807 TMEM126AQ9H061 195 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms