RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 CLPSL2Q6UWE3 100 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 CROCCP2Q86T23 111 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 LHFPL1Q86WI0 220 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 Q8N9L7 120 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 HIST1H2BAQ96A08 127 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 C12orf57Q99622 126 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 OTORQ9NRC9 128 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 LAMTOR3Q9UHA4 124 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 LAMTOR2Q9Y2Q5 125 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 TRBV6-7A0A0A0MS04 114 aa2.31□□□□□ -2.04
HMGB1-207ENST00000468384 FAM24AA6NFZ4 105 aa2.31□□□□□ -2.04
HMGB1-207ENST00000468384 SLC25A20O43772 301 aa2.31□□□□□ -2.04
HMGB1-207ENST00000468384 LINC00694P0DN24 101 aa2.31□□□□□ -2.04
HMGB1-207ENST00000468384 ZNF90Q03938 601 aa2.31□□□□□ -2.04
HMGB1-207ENST00000468384 PRR15Q8IV56 129 aa2.31□□□□□ -2.04
HMGB1-207ENST00000468384 SPANXA2-OT1Q8N9U9 137 aa2.31□□□□□ -2.04
HMGB1-207ENST00000468384 SLC25A21Q9BQT8 299 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-207ENST00000468384 GGACTQ9BVM4 153 aa2.31□□□□□ -2.04
HMGB1-207ENST00000468384 LPAR5Q9H1C0 372 aa2.31□□□□□ -2.04
HMGB1-207ENST00000468384 C11orf1Q9H5F2 150 aa2.31□□□□□ -2.04
HMGB1-207ENST00000468384 CKLFQ9UBR5 152 aa2.31□□□□□ -2.04
HMGB1-207ENST00000468384 A0A0B4J2C4 111 aa2.3□□□□□ -2.04
HMGB1-207ENST00000468384 J3QQQ9 107 aa2.3□□□□□ -2.04
HMGB1-207ENST00000468384 M0R378 163 aa2.3□□□□□ -2.04
HMGB1-207ENST00000468384 LEPROTO15243 131 aa2.3□□□□□ -2.04
HMGB1-207ENST00000468384 SH2D1AO60880 128 aa2.3□□□□□ -2.04
HMGB1-207ENST00000468384 AKR1C2P52895 323 aa2.3□□□□□ -2.04
HMGB1-207ENST00000468384 EIF4EBP1Q13541 118 aaPredicted RBP2.3□□□□□ -2.04
HMGB1-207ENST00000468384 Q5XG85 94 aa2.3□□□□□ -2.04
HMGB1-207ENST00000468384 GLIPR1L1Q6UWM5 242 aa2.3□□□□□ -2.04
HMGB1-207ENST00000468384 TCTE3Q8IZS6 198 aa2.3□□□□□ -2.04
HMGB1-207ENST00000468384 SLC39A9Q9NUM3 307 aa2.3□□□□□ -2.04
HMGB1-207ENST00000468384 TAS2R4Q9NYW5 299 aa2.3□□□□□ -2.04
HMGB1-207ENST00000468384 MUC19Q7Z5P9 8384 aa2.3□□□□□ -2.04
HMGB1-207ENST00000468384 TRBV24-1A0A075B6N3 115 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 A0A1B0GW54 56 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 C7orf71A4D174 169 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 C19orf71A6NCJ1 209 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 MEIS3P1A6NDR6 274 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 C9orf92A6NGG3 77 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 A8MUU9 505 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 TMEM256-PLSCR3K7ERE1 68 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 MT-ND4LP03901 98 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 MT1BP07438 61 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 TAS2R20P59543 309 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 MEF2BQ02080 365 aaPredicted RBP2.29□□□□□ -2.04
HMGB1-207ENST00000468384 MSMO1Q15800 293 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 LINC01554Q52M75 96 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 TVP23CQ96ET8 276 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 TP53RKQ96S44 253 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 MGLLQ99685 303 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 TAS2R8Q9NYW2 309 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 NAT8BQ9UHF3 227 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 ERG28Q9UKR5 140 aa2.29□□□□□ -2.04
HMGB1-207ENST00000468384 DPM2O94777 84 aa2.28□□□□□ -2.04
HMGB1-207ENST00000468384 SLC25A5P05141 298 aaKnown RBP2.28□□□□□ -2.04
HMGB1-207ENST00000468384 CXCL1P09341 107 aa2.28□□□□□ -2.04
HMGB1-207ENST00000468384 UCHL1P09936 223 aa2.28□□□□□ -2.04
HMGB1-207ENST00000468384 GZMBP10144 247 aa2.28□□□□□ -2.04
HMGB1-207ENST00000468384 ZNF25P17030 456 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-207ENST00000468384 S100A4P26447 101 aaKnown RBP2.28□□□□□ -2.04
HMGB1-207ENST00000468384 RAB5CP51148 216 aa2.28□□□□□ -2.04
HMGB1-207ENST00000468384 BPIFA4PQ86YQ2 179 aa2.28□□□□□ -2.04
HMGB1-207ENST00000468384 LINC00269Q8N2A0 174 aa2.28□□□□□ -2.04
HMGB1-207ENST00000468384 FAM19A2Q8N3H0 131 aa2.28□□□□□ -2.04
HMGB1-207ENST00000468384 TERB2Q8NHR7 220 aa2.28□□□□□ -2.04
HMGB1-207ENST00000468384 GINS4Q9BRT9 223 aa2.28□□□□□ -2.04
HMGB1-207ENST00000468384 OR5AC2Q9NZP5 309 aa2.28□□□□□ -2.04
HMGB1-207ENST00000468384 GNG8Q9UK08 70 aa2.28□□□□□ -2.04
HMGB1-207ENST00000468384 IGKV1D-37A0A075B6S9 117 aa2.27□□□□□ -2.05
HMGB1-207ENST00000468384 LOC107984640A0A0U1RRK4 108 aa2.27□□□□□ -2.05
HMGB1-207ENST00000468384 C7orf66A4D0T2 115 aa2.27□□□□□ -2.05
HMGB1-207ENST00000468384 CRYM-AS1A6NIL9 109 aa2.27□□□□□ -2.05
HMGB1-207ENST00000468384 FABP5P3A8MUU1 101 aa2.27□□□□□ -2.05
HMGB1-207ENST00000468384 SNAPC5O75971 98 aa2.27□□□□□ -2.05
HMGB1-207ENST00000468384 NCS1P62166 190 aa2.27□□□□□ -2.05
HMGB1-207ENST00000468384 ERHP84090 104 aaKnown RBP2.27□□□□□ -2.05
HMGB1-207ENST00000468384 C3orf22Q8N5N4 141 aa2.27□□□□□ -2.05
HMGB1-207ENST00000468384 BPIFB6Q8NFQ5 453 aa2.27□□□□□ -2.05
HMGB1-207ENST00000468384 AP1S3Q96PC3 154 aa2.27□□□□□ -2.05
HMGB1-207ENST00000468384 TNFSF18Q9UNG2 199 aa2.27□□□□□ -2.05
HMGB1-207ENST00000468384 TRAPPC1Q9Y5R8 145 aa2.27□□□□□ -2.05
HMGB1-207ENST00000468384 GVQW2A0A096LPI5 108 aaPredicted RBP2.26□□□□□ -2.05
HMGB1-207ENST00000468384 IGHV3-73A0A0B4J1V6 119 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 TMEM212A6NML5 194 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 K7ERU9 68 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 CORTO00230 105 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 FABP2P12104 132 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 SDC2P34741 201 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 RPL37P61927 97 aaKnown RBP2.26□□□□□ -2.05
HMGB1-207ENST00000468384 RPS25P62851 125 aaKnown RBP2.26□□□□□ -2.05
HMGB1-207ENST00000468384 UBE2BP63146 152 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 IFT20Q8IY31 132 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 ST20-AS1Q8NBB2 130 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 ARHGAP5-AS1Q96IT6 56 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 ODF3Q96PU9 254 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 FKBP11Q9NYL4 201 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 NAT8Q9UHE5 227 aa2.26□□□□□ -2.05
HMGB1-207ENST00000468384 IRGMA1A4Y4 181 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 C9orf170A2RU37 121 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 163 ms