RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 DEFB121Q5J5C9 76 aa8.76□□□□□ -1.01
HDAC4-208ENST00000463007 CSDC2Q9Y534 153 aaKnown RBP8.76□□□□□ -1.01
HDAC4-208ENST00000463007 IGLV10-54A0A075B6I4 117 aa8.75□□□□□ -1.01
HDAC4-208ENST00000463007 TRAV13-2A0A0B4J235 113 aa8.75□□□□□ -1.01
HDAC4-208ENST00000463007 TRACP01848 142 aa8.75□□□□□ -1.01
HDAC4-208ENST00000463007 ACYP1P07311 99 aa8.75□□□□□ -1.01
HDAC4-208ENST00000463007 C3orf22Q8N5N4 141 aa8.75□□□□□ -1.01
HDAC4-208ENST00000463007 COPS9Q8WXC6 57 aa8.75□□□□□ -1.01
HDAC4-208ENST00000463007 A0A1B0GX51 115 aa8.74□□□□□ -1.01
HDAC4-208ENST00000463007 LINC00846Q9NV44 126 aa8.74□□□□□ -1.01
HDAC4-208ENST00000463007 CCL24O00175 119 aa8.74□□□□□ -1.01
HDAC4-208ENST00000463007 INAFM2P0DMQ5 153 aa8.74□□□□□ -1.01
HDAC4-208ENST00000463007 C5orf47Q569G3 176 aa8.74□□□□□ -1.01
HDAC4-208ENST00000463007 LINC01006Q8NI28 216 aa8.74□□□□□ -1.01
HDAC4-208ENST00000463007 CYSTM1Q9H1C7 97 aa8.74□□□□□ -1.01
HDAC4-208ENST00000463007 GIG44P09565 113 aaPredicted RBP8.73□□□□□ -1.01
HDAC4-208ENST00000463007 UNC79Q9P2D8 2635 aa8.72□□□□□ -1.01
HDAC4-208ENST00000463007 C19orf73Q9NVV2 129 aa8.72□□□□□ -1.01
HDAC4-208ENST00000463007 LINC01600Q96MT4 127 aa8.71□□□□□ -1.01
HDAC4-208ENST00000463007 TMEM126AQ9H061 195 aa8.71□□□□□ -1.01
HDAC4-208ENST00000463007 DEFB4AO15263 64 aa8.71□□□□□ -1.02
HDAC4-208ENST00000463007 CXCL5P42830 114 aa8.71□□□□□ -1.02
HDAC4-208ENST00000463007 LINC00526Q96FQ7 95 aa8.71□□□□□ -1.02
HDAC4-208ENST00000463007 UQCRQO14949 82 aa8.7□□□□□ -1.02
HDAC4-208ENST00000463007 HILS1P60008 231 aa8.7□□□□□ -1.02
HDAC4-208ENST00000463007 C9orf116Q5BN46 136 aaPredicted RBP8.7□□□□□ -1.02
HDAC4-208ENST00000463007 RPL28P46779 137 aaKnown RBP8.7□□□□□ -1.02
HDAC4-208ENST00000463007 ATRQ13535 2644 aa8.69□□□□□ -1.02
HDAC4-208ENST00000463007 PLAC8L1A1L4L8 177 aa8.69□□□□□ -1.02
HDAC4-208ENST00000463007 SMIM9A6NGZ8 99 aa8.69□□□□□ -1.02
HDAC4-208ENST00000463007 Q8N3U1 123 aa8.69□□□□□ -1.02
HDAC4-208ENST00000463007 KIR2DL5BQ8NHK3 375 aa8.69□□□□□ -1.02
HDAC4-208ENST00000463007 F8P00451 2351 aa8.69□□□□□ -1.02
HDAC4-208ENST00000463007 TRBV10-1A0A0K0K1A3 114 aa8.68□□□□□ -1.02
HDAC4-208ENST00000463007 IGLV1-51P01701 117 aa8.68□□□□□ -1.02
HDAC4-208ENST00000463007 IMUPQ9GZP8 106 aa8.68□□□□□ -1.02
HDAC4-208ENST00000463007 FASNP49327 2511 aaKnown RBP8.68□□□□□ -1.02
HDAC4-208ENST00000463007 TEP1Q99973 2627 aaKnown RBP8.68□□□□□ -1.02
HDAC4-208ENST00000463007 TRAV23DV6A0A075B6W5 121 aa8.67□□□□□ -1.02
HDAC4-208ENST00000463007 COX7CP15954 63 aa8.67□□□□□ -1.02
HDAC4-208ENST00000463007 FAM19A5Q7Z5A7 132 aaPredicted RBP8.67□□□□□ -1.02
HDAC4-208ENST00000463007 HELZ2Q9BYK8 2649 aaKnown RBP8.67□□□□□ -1.02
HDAC4-208ENST00000463007 CSNK1G2-AS1Q8NCQ2 148 aa8.67□□□□□ -1.02
HDAC4-208ENST00000463007 DSCR8Q96T75 97 aa8.67□□□□□ -1.02
HDAC4-208ENST00000463007 TRBV6-8A0A0A6YYG3 113 aa8.66□□□□□ -1.02
HDAC4-208ENST00000463007 IGHV3OR16-9A0A0B4J2B5 98 aa8.66□□□□□ -1.02
HDAC4-208ENST00000463007 J3QKU1 62 aa8.66□□□□□ -1.02
HDAC4-208ENST00000463007 GYPEP15421 78 aa8.65□□□□□ -1.02
HDAC4-208ENST00000463007 HECTD1Q9ULT8 2610 aa8.65□□□□□ -1.02
HDAC4-208ENST00000463007 KRTAP10-3P60369 221 aa8.64□□□□□ -1.03
HDAC4-208ENST00000463007 FAM19A3Q7Z5A8 133 aa8.64□□□□□ -1.03
HDAC4-208ENST00000463007 FAM19A1Q7Z5A9 133 aa8.64□□□□□ -1.03
HDAC4-208ENST00000463007 ORMDL1Q9P0S3 153 aa8.64□□□□□ -1.03
HDAC4-208ENST00000463007 HIVEP1P15822 2718 aa8.64□□□□□ -1.03
HDAC4-208ENST00000463007 LINC00959A0A1B0GUT2 108 aa8.64□□□□□ -1.03
HDAC4-208ENST00000463007 OTOGQ6ZRI0 2925 aa8.64□□□□□ -1.03
HDAC4-208ENST00000463007 PKD1L1Q8TDX9 2849 aa8.64□□□□□ -1.03
HDAC4-208ENST00000463007 USP17L23D6RBM5 183 aa8.63□□□□□ -1.03
HDAC4-208ENST00000463007 LINC00269Q8N2A0 174 aa8.63□□□□□ -1.03
HDAC4-208ENST00000463007 ATOX1O00244 68 aa8.63□□□□□ -1.03
HDAC4-208ENST00000463007 FAM222AQ5U5X8 452 aa8.63□□□□□ -1.03
HDAC4-208ENST00000463007 ENHOQ6UWT2 76 aa8.63□□□□□ -1.03
HDAC4-208ENST00000463007 HTN3P15516 51 aa8.63□□□□□ -1.03
HDAC4-208ENST00000463007 RPL18AQ02543 176 aaKnown RBP8.63□□□□□ -1.03
HDAC4-208ENST00000463007 LINC01561Q8N1V8 128 aa8.63□□□□□ -1.03
HDAC4-208ENST00000463007 H0YGX0 51 aa8.62□□□□□ -1.03
HDAC4-208ENST00000463007 J3KT08 172 aa8.62□□□□□ -1.03
HDAC4-208ENST00000463007 PF4P02776 101 aa8.62□□□□□ -1.03
HDAC4-208ENST00000463007 CMC4P56277 68 aaPredicted RBP8.62□□□□□ -1.03
HDAC4-208ENST00000463007 FHL2Q14192 279 aa8.62□□□□□ -1.03
HDAC4-208ENST00000463007 C2orf48Q96LS8 159 aa8.62□□□□□ -1.03
HDAC4-208ENST00000463007 C16orf74Q96GX8 76 aa8.61□□□□□ -1.03
HDAC4-208ENST00000463007 TENM1Q9UKZ4 2725 aa8.61□□□□□ -1.03
HDAC4-208ENST00000463007 IBA57-AS1B1ANH7 110 aa8.61□□□□□ -1.03
HDAC4-208ENST00000463007 A0A087WZ39 114 aa8.61□□□□□ -1.03
HDAC4-208ENST00000463007 OVOL2Q9BRP0 275 aa8.61□□□□□ -1.03
HDAC4-208ENST00000463007 TRBV6-4A0A1B0GX49 114 aa8.6□□□□□ -1.03
HDAC4-208ENST00000463007 ANGP03950 147 aaKnown RBP8.6□□□□□ -1.03
HDAC4-208ENST00000463007 C6orf99Q4VX62 202 aa8.6□□□□□ -1.03
HDAC4-208ENST00000463007 SS18Q15532 418 aa8.6□□□□□ -1.03
HDAC4-208ENST00000463007 S100A7L2Q5SY68 101 aa8.6□□□□□ -1.03
HDAC4-208ENST00000463007 SMR3AQ99954 134 aa8.6□□□□□ -1.03
HDAC4-208ENST00000463007 LAMTOR3Q9UHA4 124 aa8.59□□□□□ -1.03
HDAC4-208ENST00000463007 HAMPP81172 84 aa8.59□□□□□ -1.03
HDAC4-208ENST00000463007 GHRHP01286 108 aa8.58□□□□□ -1.04
HDAC4-208ENST00000463007 C6orf223Q8N319 242 aa8.58□□□□□ -1.04
HDAC4-208ENST00000463007 LINC00482Q8N8I6 264 aa8.58□□□□□ -1.04
HDAC4-208ENST00000463007 SCXQ7RTU7 201 aa8.57□□□□□ -1.04
HDAC4-208ENST00000463007 C20orf197Q8N268 126 aa8.57□□□□□ -1.04
HDAC4-208ENST00000463007 SERP2Q8N6R1 65 aa8.57□□□□□ -1.04
HDAC4-208ENST00000463007 HRCT1Q6UXD1 115 aa8.56□□□□□ -1.04
HDAC4-208ENST00000463007 LINC00612Q8N6U2 182 aa8.56□□□□□ -1.04
HDAC4-208ENST00000463007 SPATA3Q8NHX4 192 aa8.56□□□□□ -1.04
HDAC4-208ENST00000463007 Q8N814 137 aa8.55□□□□□ -1.04
HDAC4-208ENST00000463007 M0R2N4 97 aa8.55□□□□□ -1.04
HDAC4-208ENST00000463007 Q6JHZ5 121 aa8.55□□□□□ -1.04
HDAC4-208ENST00000463007 Q8NDZ9 215 aa8.55□□□□□ -1.04
HDAC4-208ENST00000463007 CCKP06307 115 aa8.54□□□□□ -1.04
HDAC4-208ENST00000463007 CRYGAP11844 174 aa8.54□□□□□ -1.04
HDAC4-208ENST00000463007 XAGE1AQ9HD64 81 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms