RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 LINC01600Q96MT4 127 aa13.1□□□□□ -0.31
HMGB3-205ENST00000455596 PSORS1C2Q9UIG4 136 aa13.1□□□□□ -0.31
HMGB3-205ENST00000455596 FAM168BA1KXE4 195 aa13.09□□□□□ -0.31
HMGB3-205ENST00000455596 NDUFC2-KCTD14E9PQ53 114 aa13.09□□□□□ -0.31
HMGB3-205ENST00000455596 FA2HQ7L5A8 372 aa13.09□□□□□ -0.31
HMGB3-205ENST00000455596 SMCO4Q9NRQ5 59 aa13.09□□□□□ -0.31
HMGB3-205ENST00000455596 PLA2G2DQ9UNK4 145 aa13.09□□□□□ -0.31
HMGB3-205ENST00000455596 FAM19A5Q7Z5A7 132 aaPredicted RBP13.08□□□□□ -0.32
HMGB3-205ENST00000455596 C1orf137Q5JT78 98 aa13.06□□□□□ -0.32
HMGB3-205ENST00000455596 TINCRA0A1B0GVN0 87 aa13.05□□□□□ -0.32
HMGB3-205ENST00000455596 LINC00469Q8N7U9 141 aa13.05□□□□□ -0.32
HMGB3-205ENST00000455596 APOC3P02656 99 aa13.04□□□□□ -0.32
HMGB3-205ENST00000455596 TRAPPC1Q9Y5R8 145 aa13.04□□□□□ -0.32
HMGB3-205ENST00000455596 PMVKQ15126 192 aa13.03□□□□□ -0.32
HMGB3-205ENST00000455596 NDUFA5Q16718 116 aa13.03□□□□□ -0.32
HMGB3-205ENST00000455596 C9orf129Q5T035 196 aaKnown RBP13.03□□□□□ -0.32
HMGB3-205ENST00000455596 CST9LQ9H4G1 147 aa13.03□□□□□ -0.32
HMGB3-205ENST00000455596 SMIM1B2RUZ4 78 aa13.02□□□□□ -0.33
HMGB3-205ENST00000455596 F8VRH5 84 aa13.02□□□□□ -0.33
HMGB3-205ENST00000455596 M0QXV9 152 aa13.02□□□□□ -0.33
HMGB3-205ENST00000455596 SNAPINO95295 136 aa13.02□□□□□ -0.33
HMGB3-205ENST00000455596 CXCL5P42830 114 aa13.02□□□□□ -0.33
HMGB3-205ENST00000455596 KRTAP7-1Q8IUC3 87 aa13.02□□□□□ -0.33
HMGB3-205ENST00000455596 IGLV5-45A0A087WSX0 123 aa13.01□□□□□ -0.33
HMGB3-205ENST00000455596 PDZD11Q5EBL8 140 aa13.01□□□□□ -0.33
HMGB3-205ENST00000455596 SVBPQ8N300 66 aa13.01□□□□□ -0.33
HMGB3-205ENST00000455596 C18orf32Q8TCD1 76 aa13□□□□□ -0.33
HMGB3-205ENST00000455596 IGLV7-43P04211 117 aa12.99□□□□□ -0.33
HMGB3-205ENST00000455596 UBE2BP63146 152 aa12.99□□□□□ -0.33
HMGB3-205ENST00000455596 KRTAP11-1Q8IUC1 163 aa12.99□□□□□ -0.33
HMGB3-205ENST00000455596 LINC00614P0C842 121 aa12.98□□□□□ -0.33
HMGB3-205ENST00000455596 COX7B2Q8TF08 81 aa12.98□□□□□ -0.33
HMGB3-205ENST00000455596 KRTAP10-8P60410 259 aa12.97□□□□□ -0.33
HMGB3-205ENST00000455596 URB1-AS1Q96HZ7 61 aa12.97□□□□□ -0.33
HMGB3-205ENST00000455596 A0A096LNJ9 63 aa12.96□□□□□ -0.33
HMGB3-205ENST00000455596 SPINK8P0C7L1 97 aa12.95□□□□□ -0.34
HMGB3-205ENST00000455596 XAGE1AQ9HD64 81 aa12.95□□□□□ -0.34
HMGB3-205ENST00000455596 H3BRM9 83 aa12.94□□□□□ -0.34
HMGB3-205ENST00000455596 HBDP02042 147 aa12.94□□□□□ -0.34
HMGB3-205ENST00000455596 NDUFA6P56556 154 aa12.94□□□□□ -0.34
HMGB3-205ENST00000455596 DIRC1Q969H9 104 aa12.94□□□□□ -0.34
HMGB3-205ENST00000455596 IGLC3P0DOY3 106 aa12.93□□□□□ -0.34
HMGB3-205ENST00000455596 RAB5BP61020 215 aa12.93□□□□□ -0.34
HMGB3-205ENST00000455596 PMCHL1Q16048 86 aa12.92□□□□□ -0.34
HMGB3-205ENST00000455596 C22orf24Q9Y442 160 aa12.91□□□□□ -0.34
HMGB3-205ENST00000455596 H0Y9J4 135 aa12.9□□□□□ -0.34
HMGB3-205ENST00000455596 ATP5LO75964 103 aa12.89□□□□□ -0.35
HMGB3-205ENST00000455596 ODF1Q14990 250 aa12.89□□□□□ -0.35
HMGB3-205ENST00000455596 LBHQ53QV2 105 aaPredicted RBP12.89□□□□□ -0.35
HMGB3-205ENST00000455596 ZNF22P17026 224 aaPredicted RBP12.88□□□□□ -0.35
HMGB3-205ENST00000455596 YPEL4Q96NS1 127 aa12.87□□□□□ -0.35
HMGB3-205ENST00000455596 TP73-AS1Q9UF72 201 aa12.87□□□□□ -0.35
HMGB3-205ENST00000455596 MRPL55Q7Z7F7 128 aaKnown RBP12.86□□□□□ -0.35
HMGB3-205ENST00000455596 TNXBP22105 4242 aa12.85□□□□□ -0.35
HMGB3-205ENST00000455596 IGLV5-39A0A0G2JS06 123 aa12.85□□□□□ -0.35
HMGB3-205ENST00000455596 NUPR1O60356 82 aa12.85□□□□□ -0.35
HMGB3-205ENST00000455596 BAGE3Q86Y29 109 aa12.85□□□□□ -0.35
HMGB3-205ENST00000455596 HMCN2Q8NDA2 5059 aa12.85□□□□□ -0.35
HMGB3-205ENST00000455596 CHCHD1Q96BP2 118 aaKnown RBP12.83□□□□□ -0.36
HMGB3-205ENST00000455596 C11orf86A6NJI1 115 aa12.81□□□□□ -0.36
HMGB3-205ENST00000455596 TMEM170BQ5T4T1 132 aa12.81□□□□□ -0.36
HMGB3-205ENST00000455596 PRR26Q8N8Z3 221 aa12.81□□□□□ -0.36
HMGB3-205ENST00000455596 ZNF861PO60384 105 aa12.8□□□□□ -0.36
HMGB3-205ENST00000455596 PFN2P35080 140 aa12.8□□□□□ -0.36
HMGB3-205ENST00000455596 CHTOPQ9Y3Y2 248 aaKnown RBP12.8□□□□□ -0.36
HMGB3-205ENST00000455596 CBLN2Q8IUK8 224 aa12.79□□□□□ -0.36
HMGB3-205ENST00000455596 LINC00167Q96N53 147 aa12.79□□□□□ -0.36
HMGB3-205ENST00000455596 IGLV5-37A0A075B6J1 123 aa12.78□□□□□ -0.36
HMGB3-205ENST00000455596 KRTAP1-4P0C5Y4 121 aa12.78□□□□□ -0.36
HMGB3-205ENST00000455596 NKAPP1Q8N9T2 125 aa12.78□□□□□ -0.36
HMGB3-205ENST00000455596 IFI27L1Q96BM0 104 aa12.78□□□□□ -0.36
HMGB3-205ENST00000455596 IGLV1-50A0A075B6I6 118 aa12.77□□□□□ -0.37
HMGB3-205ENST00000455596 RPL37AP8A6NKH3 93 aa12.77□□□□□ -0.37
HMGB3-205ENST00000455596 SFTA2Q6UW10 78 aa12.77□□□□□ -0.37
HMGB3-205ENST00000455596 ERG28Q9UKR5 140 aa12.77□□□□□ -0.37
HMGB3-205ENST00000455596 TRAV12-1A0A0B4J245 112 aa12.76□□□□□ -0.37
HMGB3-205ENST00000455596 COX17Q14061 63 aa12.76□□□□□ -0.37
HMGB3-205ENST00000455596 GAGE10A6NGK3 116 aa12.75□□□□□ -0.37
HMGB3-205ENST00000455596 BCE1O60756 84 aa12.75□□□□□ -0.37
HMGB3-205ENST00000455596 HSBP1O75506 76 aa12.74□□□□□ -0.37
HMGB3-205ENST00000455596 RPL28P46779 137 aaKnown RBP12.74□□□□□ -0.37
HMGB3-205ENST00000455596 ZNF625Q96I27 306 aaPredicted RBP12.74□□□□□ -0.37
HMGB3-205ENST00000455596 SND1-IT1Q9HBX3 110 aa12.73□□□□□ -0.37
HMGB3-205ENST00000455596 TMEM223A0PJW6 202 aa12.71□□□□□ -0.37
HMGB3-205ENST00000455596 TRGC2P03986 189 aa12.71□□□□□ -0.37
HMGB3-205ENST00000455596 RPL13AP40429 203 aaKnown RBP12.71□□□□□ -0.37
HMGB3-205ENST00000455596 FAM19A2Q8N3H0 131 aa12.71□□□□□ -0.37
HMGB3-205ENST00000455596 VPREB1P12018 145 aa12.69□□□□□ -0.38
HMGB3-205ENST00000455596 RPL24P83731 157 aaKnown RBP12.69□□□□□ -0.38
HMGB3-205ENST00000455596 SLC7A5P1Q8MH63 180 aa12.69□□□□□ -0.38
HMGB3-205ENST00000455596 SCO1O75880 301 aa12.68□□□□□ -0.38
HMGB3-205ENST00000455596 IGKV2-28A0A075B6P5 120 aa12.67□□□□□ -0.38
HMGB3-205ENST00000455596 IGKV2D-28P01615 120 aa12.67□□□□□ -0.38
HMGB3-205ENST00000455596 UBE2AP49459 152 aa12.65□□□□□ -0.38
HMGB3-205ENST00000455596 LINC00158P58513 81 aa12.65□□□□□ -0.38
HMGB3-205ENST00000455596 H0Y8G0 127 aa12.64□□□□□ -0.39
HMGB3-205ENST00000455596 SERF1AO75920 110 aa12.64□□□□□ -0.39
HMGB3-205ENST00000455596 LEPROTL1O95214 131 aa12.64□□□□□ -0.39
HMGB3-205ENST00000455596 A0A0U1RRA0 63 aa12.62□□□□□ -0.39
HMGB3-205ENST00000455596 LINC00310P59036 64 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms