RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 GNB1LQ9BYB4 327 aa12.59□□□□□ -0.39
SDC1-205ENST00000447124 LINC01546A6NGU7 62 aa12.58□□□□□ -0.4
SDC1-205ENST00000447124 M0QXV9 152 aa12.58□□□□□ -0.4
SDC1-205ENST00000447124 ERASQ7Z444 233 aa12.58□□□□□ -0.4
SDC1-205ENST00000447124 SCGB3A1Q96QR1 104 aa12.58□□□□□ -0.4
SDC1-205ENST00000447124 RNF213Q63HN8 5207 aa12.58□□□□□ -0.4
SDC1-205ENST00000447124 CKS1BP61024 79 aa12.57□□□□□ -0.4
SDC1-205ENST00000447124 SEC11AP67812 179 aa12.57□□□□□ -0.4
SDC1-205ENST00000447124 LINC00469Q8N7U9 141 aa12.57□□□□□ -0.4
SDC1-205ENST00000447124 GEMIN7Q9H840 131 aaKnown RBP12.57□□□□□ -0.4
SDC1-205ENST00000447124 DIRC1Q969H9 104 aa12.56□□□□□ -0.4
SDC1-205ENST00000447124 H0Y9J4 135 aa12.54□□□□□ -0.4
SDC1-205ENST00000447124 S100PP25815 95 aa12.54□□□□□ -0.4
SDC1-205ENST00000447124 UBE2BP63146 152 aa12.54□□□□□ -0.4
SDC1-205ENST00000447124 C10orf91Q5T1B1 145 aa12.54□□□□□ -0.4
SDC1-205ENST00000447124 COMMD7Q86VX2 200 aa12.54□□□□□ -0.4
SDC1-205ENST00000447124 PRR26Q8N8Z3 221 aa12.54□□□□□ -0.4
SDC1-205ENST00000447124 XAGE1AQ9HD64 81 aa12.54□□□□□ -0.4
SDC1-205ENST00000447124 TINCRA0A1B0GVN0 87 aa12.52□□□□□ -0.41
SDC1-205ENST00000447124 SMIM1B2RUZ4 78 aa12.52□□□□□ -0.41
SDC1-205ENST00000447124 F8VRH5 84 aa12.52□□□□□ -0.41
SDC1-205ENST00000447124 MRPL18Q9H0U6 180 aaKnown RBP12.52□□□□□ -0.41
SDC1-205ENST00000447124 CST9LQ9H4G1 147 aa12.52□□□□□ -0.41
SDC1-205ENST00000447124 C22orf24Q9Y442 160 aa12.52□□□□□ -0.41
SDC1-205ENST00000447124 IGLV5-45A0A087WSX0 123 aa12.51□□□□□ -0.41
SDC1-205ENST00000447124 FABP9Q0Z7S8 132 aa12.51□□□□□ -0.41
SDC1-205ENST00000447124 KRTAP1-4P0C5Y4 121 aa12.5□□□□□ -0.41
SDC1-205ENST00000447124 COX19Q49B96 90 aa12.5□□□□□ -0.41
SDC1-205ENST00000447124 PDZD11Q5EBL8 140 aa12.49□□□□□ -0.41
SDC1-205ENST00000447124 RPS10P5Q9NQ39 176 aa12.49□□□□□ -0.41
SDC1-205ENST00000447124 COX7B2Q8TF08 81 aa12.48□□□□□ -0.41
SDC1-205ENST00000447124 CARHSP1Q9Y2V2 147 aaKnown RBP12.48□□□□□ -0.41
SDC1-205ENST00000447124 LINC01549A6NIU2 74 aa12.47□□□□□ -0.41
SDC1-205ENST00000447124 CXCL5P42830 114 aa12.47□□□□□ -0.41
SDC1-205ENST00000447124 PMVKQ15126 192 aa12.47□□□□□ -0.41
SDC1-205ENST00000447124 FA2HQ7L5A8 372 aa12.47□□□□□ -0.41
SDC1-205ENST00000447124 SPINK8P0C7L1 97 aa12.46□□□□□ -0.41
SDC1-205ENST00000447124 URB1-AS1Q96HZ7 61 aa12.46□□□□□ -0.41
SDC1-205ENST00000447124 RHEBQ15382 184 aa12.45□□□□□ -0.42
SDC1-205ENST00000447124 LPAP08519 4548 aa12.44□□□□□ -0.42
SDC1-205ENST00000447124 A0A096LNJ9 63 aa12.44□□□□□ -0.42
SDC1-205ENST00000447124 LBHQ53QV2 105 aaPredicted RBP12.44□□□□□ -0.42
SDC1-205ENST00000447124 SMCO4Q9NRQ5 59 aa12.44□□□□□ -0.42
SDC1-205ENST00000447124 ZNF861PO60384 105 aa12.43□□□□□ -0.42
SDC1-205ENST00000447124 IGLV1-50A0A075B6I6 118 aa12.42□□□□□ -0.42
SDC1-205ENST00000447124 TP73-AS1Q9UF72 201 aa12.42□□□□□ -0.42
SDC1-205ENST00000447124 RAB5BP61020 215 aa12.41□□□□□ -0.42
SDC1-205ENST00000447124 MRPL55Q7Z7F7 128 aaKnown RBP12.41□□□□□ -0.42
SDC1-205ENST00000447124 NUPR1O60356 82 aa12.4□□□□□ -0.42
SDC1-205ENST00000447124 C18orf32Q8TCD1 76 aa12.4□□□□□ -0.42
SDC1-205ENST00000447124 LINC00167Q96N53 147 aa12.4□□□□□ -0.42
SDC1-205ENST00000447124 TRAPPC1Q9Y5R8 145 aa12.4□□□□□ -0.42
SDC1-205ENST00000447124 LINC00614P0C842 121 aa12.39□□□□□ -0.43
SDC1-205ENST00000447124 IGLC3P0DOY3 106 aa12.39□□□□□ -0.43
SDC1-205ENST00000447124 IGLV5-39A0A0G2JS06 123 aa12.37□□□□□ -0.43
SDC1-205ENST00000447124 RPL37AP8A6NKH3 93 aa12.37□□□□□ -0.43
SDC1-205ENST00000447124 NDUFA6P56556 154 aa12.37□□□□□ -0.43
SDC1-205ENST00000447124 PMCHL1Q16048 86 aa12.37□□□□□ -0.43
SDC1-205ENST00000447124 H3BRM9 83 aa12.36□□□□□ -0.43
SDC1-205ENST00000447124 ZNF22P17026 224 aaPredicted RBP12.36□□□□□ -0.43
SDC1-205ENST00000447124 IGLV5-37A0A075B6J1 123 aa12.35□□□□□ -0.43
SDC1-205ENST00000447124 GAGE10A6NGK3 116 aa12.35□□□□□ -0.43
SDC1-205ENST00000447124 BCE1O60756 84 aa12.34□□□□□ -0.43
SDC1-205ENST00000447124 APOC3P02656 99 aa12.34□□□□□ -0.43
SDC1-205ENST00000447124 HBDP02042 147 aa12.33□□□□□ -0.44
SDC1-205ENST00000447124 SCO1O75880 301 aa12.32□□□□□ -0.44
SDC1-205ENST00000447124 ATP5LO75964 103 aa12.32□□□□□ -0.44
SDC1-205ENST00000447124 PFN2P35080 140 aa12.31□□□□□ -0.44
SDC1-205ENST00000447124 C11orf86A6NJI1 115 aa12.3□□□□□ -0.44
SDC1-205ENST00000447124 RPL13AP40429 203 aaKnown RBP12.3□□□□□ -0.44
SDC1-205ENST00000447124 RPL28P46779 137 aaKnown RBP12.3□□□□□ -0.44
SDC1-205ENST00000447124 BAGE3Q86Y29 109 aa12.3□□□□□ -0.44
SDC1-205ENST00000447124 YPEL4Q96NS1 127 aa12.29□□□□□ -0.44
SDC1-205ENST00000447124 SNAPINO95295 136 aa12.28□□□□□ -0.44
SDC1-205ENST00000447124 KRTAP13-1Q8IUC0 172 aa12.28□□□□□ -0.44
SDC1-205ENST00000447124 A0A087X002 238 aa12.27□□□□□ -0.45
SDC1-205ENST00000447124 SVBPQ8N300 66 aa12.27□□□□□ -0.45
SDC1-205ENST00000447124 NKAPP1Q8N9T2 125 aa12.27□□□□□ -0.45
SDC1-205ENST00000447124 ZNF625Q96I27 306 aaPredicted RBP12.27□□□□□ -0.45
SDC1-205ENST00000447124 SND1-IT1Q9HBX3 110 aa12.27□□□□□ -0.45
SDC1-205ENST00000447124 ERG28Q9UKR5 140 aa12.27□□□□□ -0.45
SDC1-205ENST00000447124 VPREB1P12018 145 aa12.26□□□□□ -0.45
SDC1-205ENST00000447124 ANAPC11Q9NYG5 84 aa12.26□□□□□ -0.45
SDC1-205ENST00000447124 TMEM170BQ5T4T1 132 aa12.25□□□□□ -0.45
SDC1-205ENST00000447124 Q8NDZ9 215 aa12.25□□□□□ -0.45
SDC1-205ENST00000447124 IGKV2-28A0A075B6P5 120 aa12.23□□□□□ -0.45
SDC1-205ENST00000447124 IGKV2D-28P01615 120 aa12.23□□□□□ -0.45
SDC1-205ENST00000447124 NDUFA5Q16718 116 aa12.23□□□□□ -0.45
SDC1-205ENST00000447124 CHTOPQ9Y3Y2 248 aaKnown RBP12.23□□□□□ -0.45
SDC1-205ENST00000447124 COX17Q14061 63 aa12.22□□□□□ -0.45
SDC1-205ENST00000447124 UBE2AP49459 152 aa12.21□□□□□ -0.45
SDC1-205ENST00000447124 TSPAN13O95857 204 aa12.2□□□□□ -0.46
SDC1-205ENST00000447124 CRYGAP11844 174 aa12.2□□□□□ -0.46
SDC1-205ENST00000447124 PRR4Q16378 134 aa12.2□□□□□ -0.46
SDC1-205ENST00000447124 TMEM223A0PJW6 202 aa12.19□□□□□ -0.46
SDC1-205ENST00000447124 KRTAP13-2Q52LG2 175 aa12.19□□□□□ -0.46
SDC1-205ENST00000447124 CHCHD1Q96BP2 118 aaKnown RBP12.19□□□□□ -0.46
SDC1-205ENST00000447124 TMEM238C9JI98 176 aa12.18□□□□□ -0.46
SDC1-205ENST00000447124 TYMSOSQ8TAI1 123 aa12.18□□□□□ -0.46
SDC1-205ENST00000447124 IFI27L1Q96BM0 104 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 104.8 ms