RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 C10orf25Q5T742 122 aa4.73□□□□□ -1.65
VPS50-204ENST00000438395 TMEM136Q6ZRR5 245 aa4.73□□□□□ -1.65
VPS50-204ENST00000438395 ATP5L2Q7Z4Y8 100 aa4.73□□□□□ -1.65
VPS50-204ENST00000438395 PRR26Q8N8Z3 221 aa4.73□□□□□ -1.65
VPS50-204ENST00000438395 MAP1LC3AQ9H492 121 aa4.73□□□□□ -1.65
VPS50-204ENST00000438395 C6orf48Q9UBA6 75 aa4.73□□□□□ -1.65
VPS50-204ENST00000438395 CYSLTR1Q9Y271 337 aa4.73□□□□□ -1.65
VPS50-204ENST00000438395 A0A1B0GXF2 115 aa4.72□□□□□ -1.65
VPS50-204ENST00000438395 NDUFC2-KCTD14E9PQ53 114 aa4.72□□□□□ -1.65
VPS50-204ENST00000438395 TOMM7Q9P0U1 55 aa4.72□□□□□ -1.65
VPS50-204ENST00000438395 LAMTOR2Q9Y2Q5 125 aa4.72□□□□□ -1.65
VPS50-204ENST00000438395 IGLV4-3A0A075B6K6 122 aa4.71□□□□□ -1.66
VPS50-204ENST00000438395 LOC389332A0A1B0GUA5 103 aa4.71□□□□□ -1.66
VPS50-204ENST00000438395 PAPPA-AS1Q5QFB9 102 aa4.71□□□□□ -1.66
VPS50-204ENST00000438395 LINC00242Q5T6M2 205 aa4.71□□□□□ -1.66
VPS50-204ENST00000438395 C2orf82Q6UX34 121 aa4.71□□□□□ -1.66
VPS50-204ENST00000438395 VCX2Q9H322 139 aa4.71□□□□□ -1.66
VPS50-204ENST00000438395 PYGO1Q9Y3Y4 419 aa4.71□□□□□ -1.66
VPS50-204ENST00000438395 C9JQL5 133 aa4.7□□□□□ -1.66
VPS50-204ENST00000438395 SEC11AP67812 179 aa4.7□□□□□ -1.66
VPS50-204ENST00000438395 PRR4Q16378 134 aa4.7□□□□□ -1.66
VPS50-204ENST00000438395 ORMDL2Q53FV1 153 aa4.7□□□□□ -1.66
VPS50-204ENST00000438395 LBHQ53QV2 105 aaPredicted RBP4.7□□□□□ -1.66
VPS50-204ENST00000438395 C6orf226Q5I0X4 101 aa4.7□□□□□ -1.66
VPS50-204ENST00000438395 C2orf66Q6UXQ4 117 aa4.7□□□□□ -1.66
VPS50-204ENST00000438395 GEMIN7Q9H840 131 aaKnown RBP4.7□□□□□ -1.66
VPS50-204ENST00000438395 MT-ND4LP03901 98 aa4.69□□□□□ -1.66
VPS50-204ENST00000438395 G0S2P27469 103 aa4.69□□□□□ -1.66
VPS50-204ENST00000438395 KIAA0087Q14695 138 aa4.69□□□□□ -1.66
VPS50-204ENST00000438395 LINC01561Q8N1V8 128 aa4.69□□□□□ -1.66
VPS50-204ENST00000438395 FAM104AQ969W3 186 aa4.69□□□□□ -1.66
VPS50-204ENST00000438395 ALKBH7Q9BT30 221 aaPredicted RBP4.69□□□□□ -1.66
VPS50-204ENST00000438395 K7EMI3 77 aa4.68□□□□□ -1.66
VPS50-204ENST00000438395 HERVK_113P63121 156 aa4.68□□□□□ -1.66
VPS50-204ENST00000438395 PNRC1Q12796 327 aaPredicted RBP4.68□□□□□ -1.66
VPS50-204ENST00000438395 LINC00469Q8N7U9 141 aa4.68□□□□□ -1.66
VPS50-204ENST00000438395 Q8N8P6 123 aa4.68□□□□□ -1.66
VPS50-204ENST00000438395 CTDSP1Q9GZU7 261 aa4.68□□□□□ -1.66
VPS50-204ENST00000438395 NXT2Q9NPJ8 142 aaKnown RBP4.68□□□□□ -1.66
VPS50-204ENST00000438395 F8VRH5 84 aa4.67□□□□□ -1.66
VPS50-204ENST00000438395 NUPR1O60356 82 aa4.67□□□□□ -1.66
VPS50-204ENST00000438395 NPSP0C0P6 89 aa4.67□□□□□ -1.66
VPS50-204ENST00000438395 CXCL5P42830 114 aa4.67□□□□□ -1.66
VPS50-204ENST00000438395 RPL28P46779 137 aaKnown RBP4.67□□□□□ -1.66
VPS50-204ENST00000438395 RAB14P61106 215 aa4.67□□□□□ -1.66
VPS50-204ENST00000438395 C9orf129Q5T035 196 aaKnown RBP4.67□□□□□ -1.66
VPS50-204ENST00000438395 KRTAP11-1Q8IUC1 163 aa4.67□□□□□ -1.66
VPS50-204ENST00000438395 Q8IZM0 81 aa4.67□□□□□ -1.66
VPS50-204ENST00000438395 XAGE1AQ9HD64 81 aa4.67□□□□□ -1.66
VPS50-204ENST00000438395 CARHSP1Q9Y2V2 147 aaKnown RBP4.67□□□□□ -1.66
VPS50-204ENST00000438395 A0A0U1RQV1 116 aa4.66□□□□□ -1.66
VPS50-204ENST00000438395 ZNF861PO60384 105 aa4.66□□□□□ -1.66
VPS50-204ENST00000438395 ZC2HC1BQ5TFG8 222 aa4.66□□□□□ -1.66
VPS50-204ENST00000438395 PRSS47A8MTI9 375 aa4.65□□□□□ -1.67
VPS50-204ENST00000438395 KRTAP1-4P0C5Y4 121 aa4.65□□□□□ -1.67
VPS50-204ENST00000438395 LINC00173Q6ZV60 143 aa4.65□□□□□ -1.67
VPS50-204ENST00000438395 MRPL55Q7Z7F7 128 aaKnown RBP4.65□□□□□ -1.67
VPS50-204ENST00000438395 KRTAP7-1Q8IUC3 87 aa4.65□□□□□ -1.67
VPS50-204ENST00000438395 NKAPP1Q8N9T2 125 aa4.65□□□□□ -1.67
VPS50-204ENST00000438395 AMELXQ99217 191 aa4.65□□□□□ -1.67
VPS50-204ENST00000438395 C22orf24Q9Y442 160 aa4.65□□□□□ -1.67
VPS50-204ENST00000438395 IGIPA6NJ69 53 aa4.64□□□□□ -1.67
VPS50-204ENST00000438395 UBE2AP49459 152 aa4.64□□□□□ -1.67
VPS50-204ENST00000438395 SCGB3A1Q96QR1 104 aa4.64□□□□□ -1.67
VPS50-204ENST00000438395 TIMM17AQ99595 171 aa4.64□□□□□ -1.67
VPS50-204ENST00000438395 TP73-AS1Q9UF72 201 aa4.64□□□□□ -1.67
VPS50-204ENST00000438395 CDKN2A-AS1Q9UH64 79 aa4.64□□□□□ -1.67
VPS50-204ENST00000438395 A0A1B0GVG6 124 aa4.63□□□□□ -1.67
VPS50-204ENST00000438395 LINC01549A6NIU2 74 aa4.63□□□□□ -1.67
VPS50-204ENST00000438395 BCE1O60756 84 aa4.63□□□□□ -1.67
VPS50-204ENST00000438395 TSPAN13O95857 204 aa4.63□□□□□ -1.67
VPS50-204ENST00000438395 CRYGAP11844 174 aa4.63□□□□□ -1.67
VPS50-204ENST00000438395 ERASQ7Z444 233 aa4.63□□□□□ -1.67
VPS50-204ENST00000438395 COX7B2Q8TF08 81 aa4.63□□□□□ -1.67
VPS50-204ENST00000438395 GAGE10A6NGK3 116 aa4.62□□□□□ -1.67
VPS50-204ENST00000438395 RPL37AP8A6NKH3 93 aa4.62□□□□□ -1.67
VPS50-204ENST00000438395 H3BRM9 83 aa4.62□□□□□ -1.67
VPS50-204ENST00000438395 ATP5LO75964 103 aa4.62□□□□□ -1.67
VPS50-204ENST00000438395 PDZD11Q5EBL8 140 aa4.62□□□□□ -1.67
VPS50-204ENST00000438395 FAM19A3Q7Z5A8 133 aa4.62□□□□□ -1.67
VPS50-204ENST00000438395 TYMSOSQ8TAI1 123 aa4.62□□□□□ -1.67
VPS50-204ENST00000438395 TOMM6Q96B49 74 aa4.62□□□□□ -1.67
VPS50-204ENST00000438395 TINCRA0A1B0GVN0 87 aa4.61□□□□□ -1.67
VPS50-204ENST00000438395 SMIM1B2RUZ4 78 aa4.61□□□□□ -1.67
VPS50-204ENST00000438395 S100PP25815 95 aa4.61□□□□□ -1.67
VPS50-204ENST00000438395 SMCO4Q9NRQ5 59 aa4.61□□□□□ -1.67
VPS50-204ENST00000438395 SPINK8P0C7L1 97 aa4.6□□□□□ -1.67
VPS50-204ENST00000438395 RAB5BP61020 215 aa4.6□□□□□ -1.67
VPS50-204ENST00000438395 KIAA1644Q3SXP7 199 aa4.6□□□□□ -1.67
VPS50-204ENST00000438395 FA2HQ7L5A8 372 aa4.6□□□□□ -1.67
VPS50-204ENST00000438395 LINC00167Q96N53 147 aa4.6□□□□□ -1.67
VPS50-204ENST00000438395 TRAV9-1A0A075B6T8 112 aa4.59□□□□□ -1.67
VPS50-204ENST00000438395 IGKV2D-26A0A0A0MRZ7 120 aa4.59□□□□□ -1.67
VPS50-204ENST00000438395 CST9LQ9H4G1 147 aa4.59□□□□□ -1.67
VPS50-204ENST00000438395 LPAP08519 4548 aa4.58□□□□□ -1.68
VPS50-204ENST00000438395 IGKV2-28A0A075B6P5 120 aa4.58□□□□□ -1.68
VPS50-204ENST00000438395 IGLV5-45A0A087WSX0 123 aa4.58□□□□□ -1.68
VPS50-204ENST00000438395 A0A087X002 238 aa4.58□□□□□ -1.68
VPS50-204ENST00000438395 IGKV2D-28P01615 120 aa4.58□□□□□ -1.68
VPS50-204ENST00000438395 PFN2P35080 140 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms