RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 NDUFA1O15239 70 aa7□□□□□ -1.29
USP54-205ENST00000424265 MYO9AB2RTY4 2548 aa7□□□□□ -1.29
USP54-205ENST00000424265 SERTAD4-AS1Q5TG53 156 aa7□□□□□ -1.29
USP54-205ENST00000424265 HECTD1Q9ULT8 2610 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 DEFB135Q30KP9 77 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 ODF3L2Q3SX64 289 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 C20orf203Q8NBC4 194 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 IGLV4-3A0A075B6K6 122 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 IGHV3-53P01767 116 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 FAM229BQ4G0N7 80 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 UBE2DNLQ8IWF7 75 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 LINC00467Q9BRT7 94 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 C11orf21Q9P2W6 132 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 A0A087WYN8 130 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 TRBV10-1A0A0K0K1A3 114 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 TM2D3Q9BRN9 247 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 IGHV3-16A0A0C4DH30 117 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 LINC00269Q8N2A0 174 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 FAM218AQ96MZ4 157 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 SND1-IT1Q9HBX3 110 aa6.99□□□□□ -1.29
USP54-205ENST00000424265 TOMM7Q9P0U1 55 aa6.98□□□□□ -1.29
USP54-205ENST00000424265 DSPP15924 2871 aaKnown RBP6.98□□□□□ -1.29
USP54-205ENST00000424265 LITAFQ99732 161 aa6.98□□□□□ -1.29
USP54-205ENST00000424265 A6NED7 52 aa6.98□□□□□ -1.29
USP54-205ENST00000424265 TRAV10A0A0B4J240 114 aa6.98□□□□□ -1.29
USP54-205ENST00000424265 Q8N3U1 123 aa6.97□□□□□ -1.29
USP54-205ENST00000424265 IGHV3-73A0A0B4J1V6 119 aa6.97□□□□□ -1.29
USP54-205ENST00000424265 K7EQD1 137 aa6.97□□□□□ -1.29
USP54-205ENST00000424265 BPY2O14599 106 aa6.97□□□□□ -1.29
USP54-205ENST00000424265 M0R378 163 aa6.96□□□□□ -1.29
USP54-205ENST00000424265 NKAPP1Q8N9T2 125 aa6.96□□□□□ -1.29
USP54-205ENST00000424265 IBA57-AS1B1ANH7 110 aa6.96□□□□□ -1.29
USP54-205ENST00000424265 F8P00451 2351 aa6.96□□□□□ -1.3
USP54-205ENST00000424265 POLR2KP53803 58 aaKnown RBP6.96□□□□□ -1.3
USP54-205ENST00000424265 LAMA1P25391 3075 aa6.96□□□□□ -1.3
USP54-205ENST00000424265 FAM19A3Q7Z5A8 133 aa6.96□□□□□ -1.3
USP54-205ENST00000424265 MDFIQ99750 246 aa6.96□□□□□ -1.3
USP54-205ENST00000424265 DEFB1P60022 68 aa6.95□□□□□ -1.3
USP54-205ENST00000424265 SCXQ7RTU7 201 aa6.95□□□□□ -1.3
USP54-205ENST00000424265 PRO0255Q9UI72 69 aa6.95□□□□□ -1.3
USP54-205ENST00000424265 LCA10Q71F78 164 aa6.95□□□□□ -1.3
USP54-205ENST00000424265 CR1P17927 2039 aa6.95□□□□□ -1.3
USP54-205ENST00000424265 IGHV4-30-4P0DP06 118 aa6.94□□□□□ -1.3
USP54-205ENST00000424265 EYSQ5T1H1 3165 aa6.94□□□□□ -1.3
USP54-205ENST00000424265 ABCA2Q9BZC7 2435 aa6.94□□□□□ -1.3
USP54-205ENST00000424265 SMIM11BQ8TCY0 68 aa6.94□□□□□ -1.3
USP54-205ENST00000424265 LINC01547P58512 204 aaPredicted RBP6.94□□□□□ -1.3
USP54-205ENST00000424265 C8orf87E5RJ46 101 aa6.94□□□□□ -1.3
USP54-205ENST00000424265 C7orf65Q6ZTY9 151 aa6.93□□□□□ -1.3
USP54-205ENST00000424265 FLNBO75369 2602 aaKnown RBP6.93□□□□□ -1.3
USP54-205ENST00000424265 PRR15LQ9BU68 103 aa6.93□□□□□ -1.3
USP54-205ENST00000424265 ACANP16112 2415 aa6.93□□□□□ -1.3
USP54-205ENST00000424265 WDFY4Q6ZS81 3184 aa6.93□□□□□ -1.3
USP54-205ENST00000424265 Q1T7F1 81 aa6.93□□□□□ -1.3
USP54-205ENST00000424265 SPATA3Q8NHX4 192 aa6.93□□□□□ -1.3
USP54-205ENST00000424265 MTORP42345 2549 aa6.92□□□□□ -1.3
USP54-205ENST00000424265 TRAV22A0A0B4J277 110 aa6.91□□□□□ -1.3
USP54-205ENST00000424265 HCG22E2RYF7 251 aa6.91□□□□□ -1.3
USP54-205ENST00000424265 CCL18P55774 89 aa6.91□□□□□ -1.3
USP54-205ENST00000424265 CXCL6P80162 114 aa6.91□□□□□ -1.3
USP54-205ENST00000424265 JMJD1CQ15652 2540 aa6.91□□□□□ -1.3
USP54-205ENST00000424265 CFAP46Q8IYW2 2715 aa6.91□□□□□ -1.3
USP54-205ENST00000424265 CHD6Q8TD26 2715 aa6.91□□□□□ -1.3
USP54-205ENST00000424265 COX7B2Q8TF08 81 aa6.91□□□□□ -1.3
USP54-205ENST00000424265 TRBV6-4A0A1B0GX49 114 aa6.91□□□□□ -1.3
USP54-205ENST00000424265 A8MUN3 132 aa6.91□□□□□ -1.3
USP54-205ENST00000424265 PDE6GP18545 87 aa6.91□□□□□ -1.3
USP54-205ENST00000424265 CDKN2A-AS1Q9UH64 79 aa6.91□□□□□ -1.3
USP54-205ENST00000424265 WNK1Q9H4A3 2382 aa6.9□□□□□ -1.3
USP54-205ENST00000424265 TRBV6-5A0A0K0K1A5 114 aa6.9□□□□□ -1.3
USP54-205ENST00000424265 GYPEP15421 78 aa6.9□□□□□ -1.3
USP54-205ENST00000424265 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.9□□□□□ -1.3
USP54-205ENST00000424265 IGKV2-29A2NJV5 120 aaPredicted RBP6.9□□□□□ -1.3
USP54-205ENST00000424265 ATP11AUNQ6ZP68 121 aa6.9□□□□□ -1.31
USP54-205ENST00000424265 ERC2-IT1O76042 136 aa6.89□□□□□ -1.31
USP54-205ENST00000424265 IGHV4-28A0A0C4DH34 117 aa6.89□□□□□ -1.31
USP54-205ENST00000424265 NANOS2P60321 138 aaKnown RBP6.89□□□□□ -1.31
USP54-205ENST00000424265 PRR9Q5T870 116 aa6.89□□□□□ -1.31
USP54-205ENST00000424265 LINC00588Q9Y4M8 146 aa6.89□□□□□ -1.31
USP54-205ENST00000424265 IGKV3OR2-268A0A0C4DH90 116 aa6.88□□□□□ -1.31
USP54-205ENST00000424265 RNASE3P12724 160 aaKnown RBP6.88□□□□□ -1.31
USP54-205ENST00000424265 Q6ZTI0 123 aa6.88□□□□□ -1.31
USP54-205ENST00000424265 HIGD2AQ9BW72 106 aa6.88□□□□□ -1.31
USP54-205ENST00000424265 UNC79Q9P2D8 2635 aa6.88□□□□□ -1.31
USP54-205ENST00000424265 PRR4Q16378 134 aa6.88□□□□□ -1.31
USP54-205ENST00000424265 WFDC10AQ9H1F0 79 aa6.88□□□□□ -1.31
USP54-205ENST00000424265 SYCNQ0VAF6 134 aa6.87□□□□□ -1.31
USP54-205ENST00000424265 DMXL1Q9Y485 3027 aa6.87□□□□□ -1.31
USP54-205ENST00000424265 FLNAP21333 2647 aaKnown RBP6.87□□□□□ -1.31
USP54-205ENST00000424265 C9orf129Q5T035 196 aaKnown RBP6.87□□□□□ -1.31
USP54-205ENST00000424265 CFAP54Q96N23 3096 aa6.87□□□□□ -1.31
USP54-205ENST00000424265 LIMD2Q9BT23 127 aa6.87□□□□□ -1.31
USP54-205ENST00000424265 VPS13AQ96RL7 3174 aa6.87□□□□□ -1.31
USP54-205ENST00000424265 A8MTW9 85 aa6.86□□□□□ -1.31
USP54-205ENST00000424265 hDV103S1A0JD37 113 aa6.86□□□□□ -1.31
USP54-205ENST00000424265 ITPR3Q14573 2671 aa6.86□□□□□ -1.31
USP54-205ENST00000424265 NOTCH3Q9UM47 2321 aa6.85□□□□□ -1.31
USP54-205ENST00000424265 DEFB131BA0A096LNP1 70 aa6.85□□□□□ -1.31
USP54-205ENST00000424265 TRBV7-4A0A0J9YYF1 115 aa6.85□□□□□ -1.31
USP54-205ENST00000424265 M0QY20 66 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms