RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 CHCHD10Q8WYQ3 142 aaPredicted RBP13.76□□□□□ -0.21
USP39-204ENST00000409766 COX6CP09669 75 aa13.76□□□□□ -0.21
USP39-204ENST00000409766 LINC00158P58513 81 aa13.75□□□□□ -0.21
USP39-204ENST00000409766 C11orf68Q9H3H3 251 aaKnown RBP13.75□□□□□ -0.21
USP39-204ENST00000409766 COL6A5A8TX70 2615 aa13.75□□□□□ -0.21
USP39-204ENST00000409766 IGLV10-54A0A075B6I4 117 aa13.74□□□□□ -0.21
USP39-204ENST00000409766 C9JAW5 83 aa13.74□□□□□ -0.21
USP39-204ENST00000409766 LYPD5Q6UWN5 251 aa13.74□□□□□ -0.21
USP39-204ENST00000409766 H3BNG1 76 aa13.73□□□□□ -0.21
USP39-204ENST00000409766 COX7A2LO14548 114 aa13.73□□□□□ -0.21
USP39-204ENST00000409766 J3QR89 54 aa13.73□□□□□ -0.21
USP39-204ENST00000409766 SLC25A20O43772 301 aa13.73□□□□□ -0.21
USP39-204ENST00000409766 LINC01620Q4KN68 170 aa13.73□□□□□ -0.21
USP39-204ENST00000409766 Q6ZTC4 211 aa13.72□□□□□ -0.21
USP39-204ENST00000409766 M0QXV9 152 aa13.71□□□□□ -0.21
USP39-204ENST00000409766 TEN1Q86WV5 123 aa13.71□□□□□ -0.21
USP39-204ENST00000409766 TENM3Q9P273 2699 aa13.71□□□□□ -0.21
USP39-204ENST00000409766 PFN2P35080 140 aa13.71□□□□□ -0.22
USP39-204ENST00000409766 FOXI1Q12951 378 aa13.71□□□□□ -0.22
USP39-204ENST00000409766 KIAA0087Q14695 138 aa13.71□□□□□ -0.22
USP39-204ENST00000409766 C2orf82Q6UX34 121 aa13.7□□□□□ -0.22
USP39-204ENST00000409766 SND1-IT1Q9HBX3 110 aa13.7□□□□□ -0.22
USP39-204ENST00000409766 PRR34Q9NV39 138 aa13.7□□□□□ -0.22
USP39-204ENST00000409766 CCL18P55774 89 aa13.69□□□□□ -0.22
USP39-204ENST00000409766 KPRPQ5T749 579 aaPredicted RBP13.69□□□□□ -0.22
USP39-204ENST00000409766 CLEC2BQ92478 149 aa13.69□□□□□ -0.22
USP39-204ENST00000409766 LST1O00453 97 aa13.68□□□□□ -0.22
USP39-204ENST00000409766 LINC01600Q96MT4 127 aa13.68□□□□□ -0.22
USP39-204ENST00000409766 IGKV2-28A0A075B6P5 120 aa13.68□□□□□ -0.22
USP39-204ENST00000409766 A0A0J9YWU9 116 aa13.68□□□□□ -0.22
USP39-204ENST00000409766 IGKV2D-28P01615 120 aa13.68□□□□□ -0.22
USP39-204ENST00000409766 MALP21145 153 aa13.68□□□□□ -0.22
USP39-204ENST00000409766 ANKRD29Q8N6D5 301 aa13.68□□□□□ -0.22
USP39-204ENST00000409766 KLK12Q9UKR0 248 aa13.68□□□□□ -0.22
USP39-204ENST00000409766 CKS1BP61024 79 aa13.67□□□□□ -0.22
USP39-204ENST00000409766 CARD19Q96LW7 228 aa13.67□□□□□ -0.22
USP39-204ENST00000409766 TRAV13-2A0A0B4J235 113 aa13.66□□□□□ -0.22
USP39-204ENST00000409766 TRBV10-2A0A0K0K1G8 114 aa13.66□□□□□ -0.22
USP39-204ENST00000409766 NOTCH1P46531 2555 aa13.66□□□□□ -0.22
USP39-204ENST00000409766 ENHOQ6UWT2 76 aa13.66□□□□□ -0.22
USP39-204ENST00000409766 LINC00337Q8N6G1 96 aa13.66□□□□□ -0.22
USP39-204ENST00000409766 PPDPFLQ8WWR9 84 aa13.66□□□□□ -0.22
USP39-204ENST00000409766 CXCL5P42830 114 aa13.65□□□□□ -0.22
USP39-204ENST00000409766 CFAP161Q6P656 301 aa13.64□□□□□ -0.23
USP39-204ENST00000409766 GAGE12HA6NDE8 117 aa13.64□□□□□ -0.23
USP39-204ENST00000409766 CRPP02741 224 aa13.64□□□□□ -0.23
USP39-204ENST00000409766 NANOS2P60321 138 aaKnown RBP13.63□□□□□ -0.23
USP39-204ENST00000409766 KLK5Q9Y337 293 aaPredicted RBP13.63□□□□□ -0.23
USP39-204ENST00000409766 WFDC10BQ8IUB3 73 aa13.62□□□□□ -0.23
USP39-204ENST00000409766 C11orf45Q8TAV5 145 aa13.62□□□□□ -0.23
USP39-204ENST00000409766 RPL28P46779 137 aaKnown RBP13.61□□□□□ -0.23
USP39-204ENST00000409766 COX17Q14061 63 aa13.61□□□□□ -0.23
USP39-204ENST00000409766 NBEAL1Q6ZS30 2694 aa13.6□□□□□ -0.23
USP39-204ENST00000409766 DEFB131BA0A096LNP1 70 aa13.59□□□□□ -0.23
USP39-204ENST00000409766 H3BT86 120 aa13.59□□□□□ -0.23
USP39-204ENST00000409766 ESRGQ1W209 222 aa13.59□□□□□ -0.23
USP39-204ENST00000409766 TRAV8-4A0A0B4J246 113 aa13.58□□□□□ -0.24
USP39-204ENST00000409766 UBE2WQ96B02 151 aa13.58□□□□□ -0.24
USP39-204ENST00000409766 SPATA25Q9BR10 227 aa13.58□□□□□ -0.24
USP39-204ENST00000409766 PRB2P02812 416 aaPredicted RBP13.57□□□□□ -0.24
USP39-204ENST00000409766 NTN5Q8WTR8 489 aaPredicted RBP13.57□□□□□ -0.24
USP39-204ENST00000409766 SPAG11BQ08648 103 aa13.57□□□□□ -0.24
USP39-204ENST00000409766 PCP4P48539 62 aa13.56□□□□□ -0.24
USP39-204ENST00000409766 C9orf116Q5BN46 136 aaPredicted RBP13.56□□□□□ -0.24
USP39-204ENST00000409766 C6orf223Q8N319 242 aa13.56□□□□□ -0.24
USP39-204ENST00000409766 SMIM11BQ8TCY0 68 aa13.56□□□□□ -0.24
USP39-204ENST00000409766 MDFIQ99750 246 aa13.55□□□□□ -0.24
USP39-204ENST00000409766 C10orf25Q5T742 122 aa13.54□□□□□ -0.24
USP39-204ENST00000409766 UNQ6190/PRO20217Q6UXQ8 127 aa13.54□□□□□ -0.24
USP39-204ENST00000409766 FAM218AQ96MZ4 157 aa13.54□□□□□ -0.24
USP39-204ENST00000409766 TM2D3Q9BRN9 247 aa13.54□□□□□ -0.24
USP39-204ENST00000409766 K7EIL1 84 aa13.53□□□□□ -0.24
USP39-204ENST00000409766 TRACP01848 142 aa13.53□□□□□ -0.24
USP39-204ENST00000409766 TEX49A0A1B0GTD5 131 aa13.52□□□□□ -0.24
USP39-204ENST00000409766 LINC00526Q96FQ7 95 aa13.52□□□□□ -0.24
USP39-204ENST00000409766 KRTAP26-1Q6PEX3 210 aa13.51□□□□□ -0.25
USP39-204ENST00000409766 NDUFC2O95298 119 aa13.51□□□□□ -0.25
USP39-204ENST00000409766 OR13C6PQ8NH95 151 aa13.5□□□□□ -0.25
USP39-204ENST00000409766 CDIP1Q9H305 208 aa13.5□□□□□ -0.25
USP39-204ENST00000409766 LINC01556Q5JQF7 62 aa13.49□□□□□ -0.25
USP39-204ENST00000409766 SIGMAR1Q99720 223 aa13.49□□□□□ -0.25
USP39-204ENST00000409766 PRR3P79522 188 aaKnown RBP13.48□□□□□ -0.25
USP39-204ENST00000409766 MUC7Q8TAX7 377 aa13.48□□□□□ -0.25
USP39-204ENST00000409766 GVQW2A0A096LPI5 108 aaPredicted RBP13.47□□□□□ -0.25
USP39-204ENST00000409766 DEFB121Q5J5C9 76 aa13.47□□□□□ -0.25
USP39-204ENST00000409766 MRAPQ8TCY5 172 aa13.47□□□□□ -0.25
USP39-204ENST00000409766 HUWE1Q7Z6Z7 4374 aaKnown RBP13.46□□□□□ -0.25
USP39-204ENST00000409766 TRAV10A0A0B4J240 114 aa13.46□□□□□ -0.25
USP39-204ENST00000409766 H0YGX0 51 aa13.46□□□□□ -0.25
USP39-204ENST00000409766 Q8NDZ9 215 aa13.45□□□□□ -0.26
USP39-204ENST00000409766 C6orf48Q9UBA6 75 aa13.44□□□□□ -0.26
USP39-204ENST00000409766 MGAM2Q2M2H8 2515 aa13.44□□□□□ -0.26
USP39-204ENST00000409766 A0A087WYN8 130 aa13.43□□□□□ -0.26
USP39-204ENST00000409766 BAALC-AS2P0C853 105 aa13.42□□□□□ -0.26
USP39-204ENST00000409766 C15orf53Q8NAA6 179 aa13.42□□□□□ -0.26
USP39-204ENST00000409766 TMEM126AQ9H061 195 aa13.42□□□□□ -0.26
USP39-204ENST00000409766 Q9HAA7 133 aa13.42□□□□□ -0.26
USP39-204ENST00000409766 DNAH10OSP0CZ25 163 aa13.41□□□□□ -0.26
USP39-204ENST00000409766 C21orf62-AS1Q17RA5 79 aa13.41□□□□□ -0.26
USP39-204ENST00000409766 ZNF561-AS1K7EIQ3 104 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms