RNA–Protein interactions for RNA: ENST00000409593.5

PMS1-203, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 1 (best)

Gene PMS1, Length 1,668 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-203ENST00000409593 HTTP42858 3142 aa-0.69□□□□□ -2.52
PMS1-203ENST00000409593 DNAH9Q9NYC9 4486 aa-0.69□□□□□ -2.52
PMS1-203ENST00000409593 LRRC37AA6NMS7 1700 aa-0.69□□□□□ -2.52
PMS1-203ENST00000409593 UBE2D3P61077 147 aa-0.69□□□□□ -2.52
PMS1-203ENST00000409593 UBE2D2P62837 147 aa-0.69□□□□□ -2.52
PMS1-203ENST00000409593 BTG2P78543 158 aa-0.69□□□□□ -2.52
PMS1-203ENST00000409593 TSLPQ969D9 159 aa-0.69□□□□□ -2.52
PMS1-203ENST00000409593 PRO1933Q9H354 126 aa-0.69□□□□□ -2.52
PMS1-203ENST00000409593 CPSF1Q10570 1443 aaKnown RBP-0.69□□□□□ -2.52
PMS1-203ENST00000409593 ADGRL2O95490 1459 aa-0.7□□□□□ -2.52
PMS1-203ENST00000409593 LAMA1P25391 3075 aa-0.7□□□□□ -2.52
PMS1-203ENST00000409593 GOLGA4Q13439 2230 aaKnown RBP-0.7□□□□□ -2.52
PMS1-203ENST00000409593 TOP2BQ02880 1626 aa-0.7□□□□□ -2.52
PMS1-203ENST00000409593 I3L3M4 83 aa-0.7□□□□□ -2.52
PMS1-203ENST00000409593 UBA52P62987 128 aaKnown RBP-0.7□□□□□ -2.52
PMS1-203ENST00000409593 WHAMMP3Q1A5X7 153 aa-0.7□□□□□ -2.52
PMS1-203ENST00000409593 FAM223AQ8IWN6 122 aa-0.7□□□□□ -2.52
PMS1-203ENST00000409593 MYOZ3Q8TDC0 251 aa-0.7□□□□□ -2.52
PMS1-203ENST00000409593 TCEAL4Q96EI5 215 aa-0.7□□□□□ -2.52
PMS1-203ENST00000409593 PDCD10Q9BUL8 212 aa-0.7□□□□□ -2.52
PMS1-203ENST00000409593 NXT2Q9NPJ8 142 aaKnown RBP-0.7□□□□□ -2.52
PMS1-203ENST00000409593 CCDC167Q9P0B6 97 aa-0.7□□□□□ -2.52
PMS1-203ENST00000409593 ANK3Q12955 4377 aaKnown RBP-0.7□□□□□ -2.52
PMS1-203ENST00000409593 MRC2Q9UBG0 1479 aa-0.7□□□□□ -2.52
PMS1-203ENST00000409593 COL14A1Q05707 1796 aaKnown RBP-0.71□□□□□ -2.52
PMS1-203ENST00000409593 NBASA2RRP1 2371 aa-0.71□□□□□ -2.52
PMS1-203ENST00000409593 CCL22O00626 93 aa-0.71□□□□□ -2.52
PMS1-203ENST00000409593 IGLC1P0CG04 106 aa-0.71□□□□□ -2.52
PMS1-203ENST00000409593 SEC11AP67812 179 aa-0.71□□□□□ -2.52
PMS1-203ENST00000409593 MRPL54Q6P161 138 aaKnown RBP-0.71□□□□□ -2.52
PMS1-203ENST00000409593 LCN9Q8WX39 176 aa-0.71□□□□□ -2.52
PMS1-203ENST00000409593 CDC42SE2Q9NRR3 84 aa-0.71□□□□□ -2.52
PMS1-203ENST00000409593 VPS13DQ5THJ4 4388 aa-0.71□□□□□ -2.52
PMS1-203ENST00000409593 PSME4Q14997 1843 aa-0.71□□□□□ -2.52
PMS1-203ENST00000409593 CUX1P39880 1505 aa-0.71□□□□□ -2.52
PMS1-203ENST00000409593 PHLPP1O60346 1717 aa-0.71□□□□□ -2.52
PMS1-203ENST00000409593 AKAP13Q12802 2813 aa-0.71□□□□□ -2.52
PMS1-203ENST00000409593 LOC100130705A0A1B0GUX0 176 aa-0.72□□□□□ -2.52
PMS1-203ENST00000409593 C9orf92A6NGG3 77 aa-0.72□□□□□ -2.52
PMS1-203ENST00000409593 MT1HP80294 61 aa-0.72□□□□□ -2.52
PMS1-203ENST00000409593 COPS9Q8WXC6 57 aa-0.72□□□□□ -2.52
PMS1-203ENST00000409593 MRPL34Q9BQ48 92 aaKnown RBP-0.72□□□□□ -2.52
PMS1-203ENST00000409593 CRIPTQ9P021 101 aa-0.72□□□□□ -2.52
PMS1-203ENST00000409593 UQCR10Q9UDW1 63 aa-0.72□□□□□ -2.52
PMS1-203ENST00000409593 TARBP1Q13395 1621 aaKnown RBP-0.72□□□□□ -2.52
PMS1-203ENST00000409593 A0A1B0GU69 56 aa-0.72□□□□□ -2.53
PMS1-203ENST00000409593 CHKB-CPT1BH3BT56 60 aa-0.72□□□□□ -2.53
PMS1-203ENST00000409593 DEFA5Q01523 94 aa-0.72□□□□□ -2.53
PMS1-203ENST00000409593 LELP1Q5T871 98 aa-0.72□□□□□ -2.53
PMS1-203ENST00000409593 C5orf38Q86SI9 138 aa-0.72□□□□□ -2.53
PMS1-203ENST00000409593 SERP1Q9Y6X1 66 aa-0.72□□□□□ -2.53
PMS1-203ENST00000409593 MBD5Q9P267 1494 aa-0.72□□□□□ -2.53
PMS1-203ENST00000409593 ROBO1Q9Y6N7 1651 aa-0.72□□□□□ -2.53
PMS1-203ENST00000409593 MAPKBP1O60336 1514 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 MAP3K1Q13233 1512 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 NIPBLQ6KC79 2804 aaeCLIP-0.73□□□□□ -2.53
PMS1-203ENST00000409593 A2ML1A8K2U0 1454 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 TRAV30A0A087WSZ9 112 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 SAA2P0DJI9 122 aaPredicted RBP-0.73□□□□□ -2.53
PMS1-203ENST00000409593 HEPN1Q6WQI6 88 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 COMMD6Q7Z4G1 85 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 WFDC13Q8IUB5 93 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 ARL11Q969Q4 196 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 SNRNP25Q9BV90 132 aaKnown RBP-0.73□□□□□ -2.53
PMS1-203ENST00000409593 SPANXDQ9BXN6 97 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 RERGLQ9H628 205 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 CDKN2A-AS1Q9UH64 79 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 ARL2-SNX15V9GYD0 113 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 BCORQ6W2J9 1755 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 VPS13BQ7Z7G8 4022 aa-0.73□□□□□ -2.53
PMS1-203ENST00000409593 LAMA3Q16787 3333 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 CELSR3Q9NYQ7 3312 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 PREX1Q8TCU6 1659 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 WDR87Q6ZQQ6 2873 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 ANKRD11Q6UB99 2663 aaPredicted RBP-0.74□□□□□ -2.53
PMS1-203ENST00000409593 DNAH7Q8WXX0 4024 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 FAM223BA6NKX1 122 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 ARPC4P59998 168 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 C6orf201Q7Z4U5 140 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 PPP3R2Q96LZ3 170 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 HIGD1BQ9P298 99 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 LINC00474Q9P2X8 69 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 ALKQ9UM73 1620 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 SHPRHQ149N8 1683 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 CLIP1P30622 1438 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 APOBP04114 4563 aaKnown RBP-0.74□□□□□ -2.53
PMS1-203ENST00000409593 KNL1Q8NG31 2342 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 FOCADQ5VW36 1801 aa-0.74□□□□□ -2.53
PMS1-203ENST00000409593 A0A1B0GWA3 101 aa-0.75□□□□□ -2.53
PMS1-203ENST00000409593 MIF4GDA9UHW6 222 aaKnown RBP-0.75□□□□□ -2.53
PMS1-203ENST00000409593 SNCAP37840 140 aa-0.75□□□□□ -2.53
PMS1-203ENST00000409593 C9orf153Q5TBE3 101 aa-0.75□□□□□ -2.53
PMS1-203ENST00000409593 LINC00846Q9NV44 126 aa-0.75□□□□□ -2.53
PMS1-203ENST00000409593 PRRC2CQ9Y520 2896 aaKnown RBP-0.75□□□□□ -2.53
PMS1-203ENST00000409593 DNAH11Q96DT5 4516 aa-0.75□□□□□ -2.53
PMS1-203ENST00000409593 C4AP0C0L4 1744 aa-0.75□□□□□ -2.53
PMS1-203ENST00000409593 C4BP0C0L5 1744 aa-0.75□□□□□ -2.53
PMS1-203ENST00000409593 RGPD2P0DJD1 1756 aa-0.75□□□□□ -2.53
PMS1-203ENST00000409593 TCHHQ07283 1943 aa-0.75□□□□□ -2.53
PMS1-203ENST00000409593 AKAP9Q99996 3911 aa-0.75□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms