RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 C6orf226Q5I0X4 101 aa12.06□□□□□ -0.48
TSPAN4-209ENST00000409543 Q8IZM0 81 aa12.06□□□□□ -0.48
TSPAN4-209ENST00000409543 MRPL18Q9H0U6 180 aaKnown RBP12.06□□□□□ -0.48
TSPAN4-209ENST00000409543 TOMM7Q9P0U1 55 aa12.06□□□□□ -0.48
TSPAN4-209ENST00000409543 FABP9Q0Z7S8 132 aa12.05□□□□□ -0.48
TSPAN4-209ENST00000409543 TNXBP22105 4242 aa12.04□□□□□ -0.48
TSPAN4-209ENST00000409543 C1orf137Q5JT78 98 aa12.04□□□□□ -0.48
TSPAN4-209ENST00000409543 FAM19A5Q7Z5A7 132 aaPredicted RBP12.04□□□□□ -0.48
TSPAN4-209ENST00000409543 FA2HQ7L5A8 372 aa12.03□□□□□ -0.48
TSPAN4-209ENST00000409543 KRTAP7-1Q8IUC3 87 aa12.03□□□□□ -0.48
TSPAN4-209ENST00000409543 KRTAP10-8P60410 259 aa12.02□□□□□ -0.49
TSPAN4-209ENST00000409543 TINCRA0A1B0GVN0 87 aa12.01□□□□□ -0.49
TSPAN4-209ENST00000409543 C9orf129Q5T035 196 aaKnown RBP12.01□□□□□ -0.49
TSPAN4-209ENST00000409543 CST9LQ9H4G1 147 aa12.01□□□□□ -0.49
TSPAN4-209ENST00000409543 SMCO4Q9NRQ5 59 aa12.01□□□□□ -0.49
TSPAN4-209ENST00000409543 KRTAP11-1Q8IUC1 163 aa12□□□□□ -0.49
TSPAN4-209ENST00000409543 LINC00469Q8N7U9 141 aa12□□□□□ -0.49
TSPAN4-209ENST00000409543 IGLV5-45A0A087WSX0 123 aa11.99□□□□□ -0.49
TSPAN4-209ENST00000409543 F8VRH5 84 aa11.99□□□□□ -0.49
TSPAN4-209ENST00000409543 M0QXV9 152 aa11.99□□□□□ -0.49
TSPAN4-209ENST00000409543 IGLV7-43P04211 117 aa11.99□□□□□ -0.49
TSPAN4-209ENST00000409543 SMIM1B2RUZ4 78 aa11.98□□□□□ -0.49
TSPAN4-209ENST00000409543 CXCL5P42830 114 aa11.98□□□□□ -0.49
TSPAN4-209ENST00000409543 PMVKQ15126 192 aa11.98□□□□□ -0.49
TSPAN4-209ENST00000409543 PDZD11Q5EBL8 140 aa11.98□□□□□ -0.49
TSPAN4-209ENST00000409543 TRAPPC1Q9Y5R8 145 aa11.97□□□□□ -0.49
TSPAN4-209ENST00000409543 APOC3P02656 99 aa11.96□□□□□ -0.49
TSPAN4-209ENST00000409543 UBE2BP63146 152 aa11.95□□□□□ -0.5
TSPAN4-209ENST00000409543 COX7B2Q8TF08 81 aa11.95□□□□□ -0.5
TSPAN4-209ENST00000409543 DIRC1Q969H9 104 aa11.95□□□□□ -0.5
TSPAN4-209ENST00000409543 NDUFA5Q16718 116 aa11.94□□□□□ -0.5
TSPAN4-209ENST00000409543 C18orf32Q8TCD1 76 aa11.94□□□□□ -0.5
TSPAN4-209ENST00000409543 UBR4Q5T4S7 5183 aa11.93□□□□□ -0.5
TSPAN4-209ENST00000409543 A0A096LNJ9 63 aa11.93□□□□□ -0.5
TSPAN4-209ENST00000409543 SNAPINO95295 136 aa11.93□□□□□ -0.5
TSPAN4-209ENST00000409543 LINC00614P0C842 121 aa11.93□□□□□ -0.5
TSPAN4-209ENST00000409543 SVBPQ8N300 66 aa11.93□□□□□ -0.5
TSPAN4-209ENST00000409543 URB1-AS1Q96HZ7 61 aa11.93□□□□□ -0.5
TSPAN4-209ENST00000409543 XAGE1AQ9HD64 81 aa11.93□□□□□ -0.5
TSPAN4-209ENST00000409543 ODF1Q14990 250 aa11.92□□□□□ -0.5
TSPAN4-209ENST00000409543 H3BRM9 83 aa11.91□□□□□ -0.5
TSPAN4-209ENST00000409543 SPINK8P0C7L1 97 aa11.91□□□□□ -0.5
TSPAN4-209ENST00000409543 C22orf24Q9Y442 160 aa11.91□□□□□ -0.5
TSPAN4-209ENST00000409543 H0Y9J4 135 aa11.9□□□□□ -0.5
TSPAN4-209ENST00000409543 IGLC3P0DOY3 106 aa11.9□□□□□ -0.5
TSPAN4-209ENST00000409543 LBHQ53QV2 105 aaPredicted RBP11.9□□□□□ -0.5
TSPAN4-209ENST00000409543 HBDP02042 147 aa11.89□□□□□ -0.51
TSPAN4-209ENST00000409543 NDUFA6P56556 154 aa11.88□□□□□ -0.51
TSPAN4-209ENST00000409543 RAB5BP61020 215 aa11.88□□□□□ -0.51
TSPAN4-209ENST00000409543 TP73-AS1Q9UF72 201 aa11.87□□□□□ -0.51
TSPAN4-209ENST00000409543 PMCHL1Q16048 86 aa11.86□□□□□ -0.51
TSPAN4-209ENST00000409543 IGLV5-39A0A0G2JS06 123 aa11.85□□□□□ -0.51
TSPAN4-209ENST00000409543 ATP5LO75964 103 aa11.85□□□□□ -0.51
TSPAN4-209ENST00000409543 MRPL55Q7Z7F7 128 aaKnown RBP11.85□□□□□ -0.51
TSPAN4-209ENST00000409543 YPEL4Q96NS1 127 aa11.85□□□□□ -0.51
TSPAN4-209ENST00000409543 NUPR1O60356 82 aa11.84□□□□□ -0.51
TSPAN4-209ENST00000409543 ZNF22P17026 224 aaPredicted RBP11.84□□□□□ -0.51
TSPAN4-209ENST00000409543 PRR26Q8N8Z3 221 aa11.83□□□□□ -0.52
TSPAN4-209ENST00000409543 BAGE3Q86Y29 109 aa11.82□□□□□ -0.52
TSPAN4-209ENST00000409543 ZNF861PO60384 105 aa11.81□□□□□ -0.52
TSPAN4-209ENST00000409543 KRTAP1-4P0C5Y4 121 aa11.81□□□□□ -0.52
TSPAN4-209ENST00000409543 IGLV1-50A0A075B6I6 118 aa11.8□□□□□ -0.52
TSPAN4-209ENST00000409543 IGLV5-37A0A075B6J1 123 aa11.79□□□□□ -0.52
TSPAN4-209ENST00000409543 C11orf86A6NJI1 115 aa11.79□□□□□ -0.52
TSPAN4-209ENST00000409543 CHCHD1Q96BP2 118 aaKnown RBP11.79□□□□□ -0.52
TSPAN4-209ENST00000409543 LINC00167Q96N53 147 aa11.79□□□□□ -0.52
TSPAN4-209ENST00000409543 BCE1O60756 84 aa11.77□□□□□ -0.53
TSPAN4-209ENST00000409543 PFN2P35080 140 aa11.77□□□□□ -0.53
TSPAN4-209ENST00000409543 TMEM170BQ5T4T1 132 aa11.77□□□□□ -0.53
TSPAN4-209ENST00000409543 LRP2P98164 4655 aa11.77□□□□□ -0.53
TSPAN4-209ENST00000409543 RPL37AP8A6NKH3 93 aa11.76□□□□□ -0.53
TSPAN4-209ENST00000409543 ERG28Q9UKR5 140 aa11.76□□□□□ -0.53
TSPAN4-209ENST00000409543 CHTOPQ9Y3Y2 248 aaKnown RBP11.76□□□□□ -0.53
TSPAN4-209ENST00000409543 GAGE10A6NGK3 116 aa11.75□□□□□ -0.53
TSPAN4-209ENST00000409543 COX17Q14061 63 aa11.75□□□□□ -0.53
TSPAN4-209ENST00000409543 SFTA2Q6UW10 78 aa11.75□□□□□ -0.53
TSPAN4-209ENST00000409543 NKAPP1Q8N9T2 125 aa11.75□□□□□ -0.53
TSPAN4-209ENST00000409543 TRAV12-1A0A0B4J245 112 aa11.74□□□□□ -0.53
TSPAN4-209ENST00000409543 RPL28P46779 137 aaKnown RBP11.74□□□□□ -0.53
TSPAN4-209ENST00000409543 IFI27L1Q96BM0 104 aa11.74□□□□□ -0.53
TSPAN4-209ENST00000409543 RPL13AP40429 203 aaKnown RBP11.73□□□□□ -0.53
TSPAN4-209ENST00000409543 CBLN2Q8IUK8 224 aa11.73□□□□□ -0.53
TSPAN4-209ENST00000409543 SND1-IT1Q9HBX3 110 aa11.73□□□□□ -0.53
TSPAN4-209ENST00000409543 ZNF625Q96I27 306 aaPredicted RBP11.72□□□□□ -0.53
TSPAN4-209ENST00000409543 TMEM223A0PJW6 202 aa11.69□□□□□ -0.54
TSPAN4-209ENST00000409543 HSBP1O75506 76 aa11.69□□□□□ -0.54
TSPAN4-209ENST00000409543 VPREB1P12018 145 aa11.69□□□□□ -0.54
TSPAN4-209ENST00000409543 SCO1O75880 301 aa11.68□□□□□ -0.54
TSPAN4-209ENST00000409543 RPL24P83731 157 aaKnown RBP11.68□□□□□ -0.54
TSPAN4-209ENST00000409543 TRGC2P03986 189 aa11.67□□□□□ -0.54
TSPAN4-209ENST00000409543 FAM19A2Q8N3H0 131 aa11.67□□□□□ -0.54
TSPAN4-209ENST00000409543 IGKV2-28A0A075B6P5 120 aa11.66□□□□□ -0.54
TSPAN4-209ENST00000409543 IGKV2D-28P01615 120 aa11.66□□□□□ -0.54
TSPAN4-209ENST00000409543 KRTAP13-1Q8IUC0 172 aa11.66□□□□□ -0.54
TSPAN4-209ENST00000409543 UBE2AP49459 152 aa11.65□□□□□ -0.54
TSPAN4-209ENST00000409543 LINC00158P58513 81 aa11.64□□□□□ -0.55
TSPAN4-209ENST00000409543 SLC7A5P1Q8MH63 180 aa11.63□□□□□ -0.55
TSPAN4-209ENST00000409543 Q8NDZ9 215 aa11.63□□□□□ -0.55
TSPAN4-209ENST00000409543 CRYGAP11844 174 aa11.61□□□□□ -0.55
TSPAN4-209ENST00000409543 TMEM126AQ9H061 195 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms