RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 C7orf33Q8WU49 177 aa8.51□□□□□ -1.05
SYNPO-202ENST00000394243 UTRNP46939 3433 aa8.5□□□□□ -1.05
SYNPO-202ENST00000394243 EDN2P20800 178 aa8.5□□□□□ -1.05
SYNPO-202ENST00000394243 A0A087WSZ3 146 aa8.5□□□□□ -1.05
SYNPO-202ENST00000394243 REG3GQ6UW15 175 aa8.5□□□□□ -1.05
SYNPO-202ENST00000394243 LINC00337Q8N6G1 96 aa8.5□□□□□ -1.05
SYNPO-202ENST00000394243 EGFEM1PQ0D2K5 195 aa8.49□□□□□ -1.05
SYNPO-202ENST00000394243 VPREB1P12018 145 aa8.49□□□□□ -1.05
SYNPO-202ENST00000394243 SPAG11AQ6PDA7 123 aa8.49□□□□□ -1.05
SYNPO-202ENST00000394243 PRO0461Q9UI25 63 aa8.49□□□□□ -1.05
SYNPO-202ENST00000394243 SMIM29Q86T20 159 aa8.48□□□□□ -1.05
SYNPO-202ENST00000394243 C1orf64Q8NEQ6 169 aa8.48□□□□□ -1.05
SYNPO-202ENST00000394243 C6orf223Q8N319 242 aa8.48□□□□□ -1.05
SYNPO-202ENST00000394243 ZNF702PQ9H963 129 aa8.47□□□□□ -1.05
SYNPO-202ENST00000394243 TET2Q6N021 2002 aaPredicted RBP8.47□□□□□ -1.05
SYNPO-202ENST00000394243 IGLV1-40P01703 118 aa8.47□□□□□ -1.05
SYNPO-202ENST00000394243 COX8CQ7Z4L0 72 aa8.47□□□□□ -1.05
SYNPO-202ENST00000394243 C19orf84I3L1E1 186 aa8.46□□□□□ -1.05
SYNPO-202ENST00000394243 CIRBP-AS1Q8TBR5 109 aa8.46□□□□□ -1.05
SYNPO-202ENST00000394243 SBSPONQ8IVN8 264 aa8.46□□□□□ -1.05
SYNPO-202ENST00000394243 Q9BRP9 147 aa8.46□□□□□ -1.06
SYNPO-202ENST00000394243 TRAV10A0A0B4J240 114 aa8.46□□□□□ -1.06
SYNPO-202ENST00000394243 PTPRBP23467 1997 aa8.45□□□□□ -1.06
SYNPO-202ENST00000394243 Q6ZSN1 163 aa8.45□□□□□ -1.06
SYNPO-202ENST00000394243 IL17DQ8TAD2 202 aa8.44□□□□□ -1.06
SYNPO-202ENST00000394243 C11orf71Q6IPW1 123 aa8.44□□□□□ -1.06
SYNPO-202ENST00000394243 ZFHX2Q9C0A1 2572 aaPredicted RBP8.44□□□□□ -1.06
SYNPO-202ENST00000394243 M0R2N4 97 aa8.44□□□□□ -1.06
SYNPO-202ENST00000394243 LRP4O75096 1905 aa8.44□□□□□ -1.06
SYNPO-202ENST00000394243 PTPRSQ13332 1948 aa8.43□□□□□ -1.06
SYNPO-202ENST00000394243 A0A1B0GU69 56 aa8.43□□□□□ -1.06
SYNPO-202ENST00000394243 CPAMD8Q8IZJ3 1885 aa8.43□□□□□ -1.06
SYNPO-202ENST00000394243 LINC01006Q8NI28 216 aa8.43□□□□□ -1.06
SYNPO-202ENST00000394243 RAI1Q7Z5J4 1906 aaPredicted RBP8.43□□□□□ -1.06
SYNPO-202ENST00000394243 SPATA3Q8NHX4 192 aa8.42□□□□□ -1.06
SYNPO-202ENST00000394243 ACACBO00763 2458 aa8.42□□□□□ -1.06
SYNPO-202ENST00000394243 LINC00474Q9P2X8 69 aa8.42□□□□□ -1.06
SYNPO-202ENST00000394243 Q8N2B8 174 aa8.42□□□□□ -1.06
SYNPO-202ENST00000394243 BCE1O60756 84 aa8.41□□□□□ -1.06
SYNPO-202ENST00000394243 ADAMTS20P59510 1910 aa8.4□□□□□ -1.06
SYNPO-202ENST00000394243 FHL2Q14192 279 aa8.4□□□□□ -1.06
SYNPO-202ENST00000394243 DOPEY1Q5JWR5 2465 aa8.4□□□□□ -1.07
SYNPO-202ENST00000394243 CACNA1AO00555 2505 aa8.4□□□□□ -1.07
SYNPO-202ENST00000394243 LINC01546A6NGU7 62 aa8.39□□□□□ -1.07
SYNPO-202ENST00000394243 FAM218AQ96MZ4 157 aa8.39□□□□□ -1.07
SYNPO-202ENST00000394243 ODF3L2Q3SX64 289 aa8.39□□□□□ -1.07
SYNPO-202ENST00000394243 FAM19A4Q96LR4 140 aa8.39□□□□□ -1.07
SYNPO-202ENST00000394243 HIVEP3Q5T1R4 2406 aa8.39□□□□□ -1.07
SYNPO-202ENST00000394243 BDP1A6H8Y1 2624 aa8.38□□□□□ -1.07
SYNPO-202ENST00000394243 MYO18BQ8IUG5 2567 aa8.38□□□□□ -1.07
SYNPO-202ENST00000394243 KIAA0087Q14695 138 aa8.37□□□□□ -1.07
SYNPO-202ENST00000394243 TM2D3Q9BRN9 247 aa8.37□□□□□ -1.07
SYNPO-202ENST00000394243 C8orf87E5RJ46 101 aa8.37□□□□□ -1.07
SYNPO-202ENST00000394243 Q6ZTC4 211 aa8.35□□□□□ -1.07
SYNPO-202ENST00000394243 IGLV5-39A0A0G2JS06 123 aa8.35□□□□□ -1.07
SYNPO-202ENST00000394243 A0A1B0GUV1 79 aa8.35□□□□□ -1.07
SYNPO-202ENST00000394243 FSHBP01225 129 aa8.35□□□□□ -1.07
SYNPO-202ENST00000394243 INAFM1C9JVW0 142 aa8.34□□□□□ -1.07
SYNPO-202ENST00000394243 ATP11AUNQ6ZP68 121 aa8.34□□□□□ -1.07
SYNPO-202ENST00000394243 NOTCH2Q04721 2471 aa8.34□□□□□ -1.07
SYNPO-202ENST00000394243 ACYP2P14621 99 aa8.34□□□□□ -1.07
SYNPO-202ENST00000394243 PRLHP81277 87 aa8.33□□□□□ -1.08
SYNPO-202ENST00000394243 KIF25-AS1Q9Y6Z4 181 aa8.33□□□□□ -1.08
SYNPO-202ENST00000394243 C7orf65Q6ZTY9 151 aa8.33□□□□□ -1.08
SYNPO-202ENST00000394243 LINC01561Q8N1V8 128 aa8.33□□□□□ -1.08
SYNPO-202ENST00000394243 IGKV2D-30A0A075B6S6 120 aa8.33□□□□□ -1.08
SYNPO-202ENST00000394243 IGKV2-30P06310 120 aa8.33□□□□□ -1.08
SYNPO-202ENST00000394243 Q6ZRU5 148 aa8.32□□□□□ -1.08
SYNPO-202ENST00000394243 Q6ZQT0 140 aa8.32□□□□□ -1.08
SYNPO-202ENST00000394243 EP400Q96L91 3159 aa8.32□□□□□ -1.08
SYNPO-202ENST00000394243 LINC01556Q5JQF7 62 aa8.31□□□□□ -1.08
SYNPO-202ENST00000394243 ABCA2Q9BZC7 2435 aa8.31□□□□□ -1.08
SYNPO-202ENST00000394243 SPINT4Q6UDR6 99 aa8.31□□□□□ -1.08
SYNPO-202ENST00000394243 MUC6Q6W4X9 2439 aa8.31□□□□□ -1.08
SYNPO-202ENST00000394243 SMCR5Q8TEV8 140 aa8.31□□□□□ -1.08
SYNPO-202ENST00000394243 C2orf48Q96LS8 159 aa8.31□□□□□ -1.08
SYNPO-202ENST00000394243 C6orf48Q9UBA6 75 aa8.3□□□□□ -1.08
SYNPO-202ENST00000394243 TP53AIP1Q9HCN2 124 aa8.29□□□□□ -1.08
SYNPO-202ENST00000394243 IGLV8-61A0A075B6I0 122 aa8.29□□□□□ -1.08
SYNPO-202ENST00000394243 A8MUN3 132 aa8.28□□□□□ -1.08
SYNPO-202ENST00000394243 F8WDY8 70 aa8.28□□□□□ -1.08
SYNPO-202ENST00000394243 AVPP01185 164 aa8.28□□□□□ -1.08
SYNPO-202ENST00000394243 LTBP2Q14767 1821 aa8.28□□□□□ -1.08
SYNPO-202ENST00000394243 NHLRC4P0CG21 123 aaPredicted RBP8.27□□□□□ -1.09
SYNPO-202ENST00000394243 C22orf24Q9Y442 160 aa8.27□□□□□ -1.09
SYNPO-202ENST00000394243 LOC110117498A0A087WWA1 95 aa8.27□□□□□ -1.09
SYNPO-202ENST00000394243 IGHV3OR16-9A0A0B4J2B5 98 aa8.26□□□□□ -1.09
SYNPO-202ENST00000394243 LINC00336Q6ZUF6 198 aa8.26□□□□□ -1.09
SYNPO-202ENST00000394243 LY6G6CO95867 125 aa8.26□□□□□ -1.09
SYNPO-202ENST00000394243 LINC00315P59091 139 aa8.25□□□□□ -1.09
SYNPO-202ENST00000394243 LYPD5Q6UWN5 251 aa8.25□□□□□ -1.09
SYNPO-202ENST00000394243 MYO9AB2RTY4 2548 aa8.25□□□□□ -1.09
SYNPO-202ENST00000394243 FHL3Q13643 280 aa8.25□□□□□ -1.09
SYNPO-202ENST00000394243 CUL9Q8IWT3 2517 aa8.25□□□□□ -1.09
SYNPO-202ENST00000394243 IGLV1-51P01701 117 aa8.25□□□□□ -1.09
SYNPO-202ENST00000394243 OXLD1Q5BKU9 147 aa8.25□□□□□ -1.09
SYNPO-202ENST00000394243 H3BPC8 53 aa8.25□□□□□ -1.09
SYNPO-202ENST00000394243 C11orf72Q8NBR9 251 aa8.25□□□□□ -1.09
SYNPO-202ENST00000394243 BRI3O95415 125 aa8.24□□□□□ -1.09
SYNPO-202ENST00000394243 MDFIQ99750 246 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms