RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 LINC00959A0A1B0GUT2 108 aa12.47□□□□□ -0.41
CCDC88C-203ENST00000389856 COX6CP09669 75 aa12.47□□□□□ -0.41
CCDC88C-203ENST00000389856 ATXN8Q156A1 80 aa12.47□□□□□ -0.41
CCDC88C-203ENST00000389856 SFTA2Q6UW10 78 aa12.47□□□□□ -0.41
CCDC88C-203ENST00000389856 LINC01600Q96MT4 127 aa12.47□□□□□ -0.41
CCDC88C-203ENST00000389856 PCP4P48539 62 aa12.46□□□□□ -0.41
CCDC88C-203ENST00000389856 SMCPP49901 116 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-203ENST00000389856 REG3AQ06141 175 aa12.44□□□□□ -0.42
CCDC88C-203ENST00000389856 LINC00269Q8N2A0 174 aa12.44□□□□□ -0.42
CCDC88C-203ENST00000389856 LINC00308Q8TCZ7 52 aa12.44□□□□□ -0.42
CCDC88C-203ENST00000389856 ESRGQ1W209 222 aa12.44□□□□□ -0.42
CCDC88C-203ENST00000389856 TEN1Q86WV5 123 aa12.44□□□□□ -0.42
CCDC88C-203ENST00000389856 CRPP02741 224 aa12.43□□□□□ -0.42
CCDC88C-203ENST00000389856 CCL18P55774 89 aa12.43□□□□□ -0.42
CCDC88C-203ENST00000389856 LINC01561Q8N1V8 128 aa12.43□□□□□ -0.42
CCDC88C-203ENST00000389856 PPDPFLQ8WWR9 84 aa12.43□□□□□ -0.42
CCDC88C-203ENST00000389856 FOXI1Q12951 378 aa12.42□□□□□ -0.42
CCDC88C-203ENST00000389856 COX7B2Q8TF08 81 aa12.42□□□□□ -0.42
CCDC88C-203ENST00000389856 H7C2G1 150 aa12.41□□□□□ -0.42
CCDC88C-203ENST00000389856 MEIG1Q5JSS6 88 aa12.41□□□□□ -0.42
CCDC88C-203ENST00000389856 A0A087WZ39 114 aa12.4□□□□□ -0.42
CCDC88C-203ENST00000389856 IGHV3OR16-9A0A0B4J2B5 98 aa12.4□□□□□ -0.42
CCDC88C-203ENST00000389856 TRIAP1O43715 76 aa12.4□□□□□ -0.42
CCDC88C-203ENST00000389856 TRAV8-4A0A0B4J246 113 aa12.4□□□□□ -0.42
CCDC88C-203ENST00000389856 SLC25A20O43772 301 aa12.4□□□□□ -0.42
CCDC88C-203ENST00000389856 CD164L2Q6UWJ8 174 aa12.4□□□□□ -0.42
CCDC88C-203ENST00000389856 MTURNQ8N3F0 131 aa12.4□□□□□ -0.42
CCDC88C-203ENST00000389856 RPL13AP40429 203 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-203ENST00000389856 XCL1P47992 114 aa12.39□□□□□ -0.43
CCDC88C-203ENST00000389856 LINC01620Q4KN68 170 aa12.39□□□□□ -0.43
CCDC88C-203ENST00000389856 LINC01556Q5JQF7 62 aa12.39□□□□□ -0.43
CCDC88C-203ENST00000389856 CLPSL2Q6UWE3 100 aa12.39□□□□□ -0.43
CCDC88C-203ENST00000389856 WFDC10BQ8IUB3 73 aa12.39□□□□□ -0.43
CCDC88C-203ENST00000389856 PRR34Q9NV39 138 aa12.39□□□□□ -0.43
CCDC88C-203ENST00000389856 KLK12Q9UKR0 248 aa12.39□□□□□ -0.43
CCDC88C-203ENST00000389856 CHCHD10Q8WYQ3 142 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-203ENST00000389856 GAGE12HA6NDE8 117 aa12.37□□□□□ -0.43
CCDC88C-203ENST00000389856 NUPR2A6NF83 97 aa12.37□□□□□ -0.43
CCDC88C-203ENST00000389856 C9JAW5 83 aa12.37□□□□□ -0.43
CCDC88C-203ENST00000389856 COX7A2LO14548 114 aa12.37□□□□□ -0.43
CCDC88C-203ENST00000389856 KLK5Q9Y337 293 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-203ENST00000389856 TRBV10-2A0A0K0K1G8 114 aa12.36□□□□□ -0.43
CCDC88C-203ENST00000389856 NPC2P61916 151 aa12.36□□□□□ -0.43
CCDC88C-203ENST00000389856 IBA57-AS1B1ANH7 110 aa12.35□□□□□ -0.43
CCDC88C-203ENST00000389856 DNAH10OSP0CZ25 163 aa12.35□□□□□ -0.43
CCDC88C-203ENST00000389856 ANKRD29Q8N6D5 301 aa12.35□□□□□ -0.43
CCDC88C-203ENST00000389856 DAND5Q8N907 189 aa12.35□□□□□ -0.43
CCDC88C-203ENST00000389856 H3BT86 120 aa12.34□□□□□ -0.43
CCDC88C-203ENST00000389856 MALP21145 153 aa12.34□□□□□ -0.43
CCDC88C-203ENST00000389856 C5orf38Q86SI9 138 aa12.34□□□□□ -0.43
CCDC88C-203ENST00000389856 Q8N3U1 123 aa12.34□□□□□ -0.43
CCDC88C-203ENST00000389856 UBE2WQ96B02 151 aa12.34□□□□□ -0.43
CCDC88C-203ENST00000389856 SIGMAR1Q99720 223 aa12.34□□□□□ -0.43
CCDC88C-203ENST00000389856 SCGB1A1P11684 91 aa12.33□□□□□ -0.43
CCDC88C-203ENST00000389856 UPK3BQ9BT76 320 aa12.33□□□□□ -0.43
CCDC88C-203ENST00000389856 HUWE1Q7Z6Z7 4374 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-203ENST00000389856 LST1O00453 97 aa12.33□□□□□ -0.44
CCDC88C-203ENST00000389856 LINC00588Q9Y4M8 146 aa12.33□□□□□ -0.44
CCDC88C-203ENST00000389856 TRAV13-2A0A0B4J235 113 aa12.32□□□□□ -0.44
CCDC88C-203ENST00000389856 SOSTDC1Q6X4U4 206 aa12.32□□□□□ -0.44
CCDC88C-203ENST00000389856 IGLV10-54A0A075B6I4 117 aa12.31□□□□□ -0.44
CCDC88C-203ENST00000389856 ENHOQ6UWT2 76 aa12.31□□□□□ -0.44
CCDC88C-203ENST00000389856 CARD19Q96LW7 228 aa12.31□□□□□ -0.44
CCDC88C-203ENST00000389856 TOMM7Q9P0U1 55 aa12.31□□□□□ -0.44
CCDC88C-203ENST00000389856 MEGF8Q7Z7M0 2845 aa12.31□□□□□ -0.44
CCDC88C-203ENST00000389856 Q8IZM0 81 aa12.29□□□□□ -0.44
CCDC88C-203ENST00000389856 STAB2Q8WWQ8 2551 aa12.29□□□□□ -0.44
CCDC88C-203ENST00000389856 CXCL5P42830 114 aa12.29□□□□□ -0.44
CCDC88C-203ENST00000389856 C6orf226Q5I0X4 101 aa12.29□□□□□ -0.44
CCDC88C-203ENST00000389856 A0A0U1RRA0 63 aa12.28□□□□□ -0.44
CCDC88C-203ENST00000389856 CFAP161Q6P656 301 aa12.28□□□□□ -0.44
CCDC88C-203ENST00000389856 C1orf43Q9BWL3 253 aa12.28□□□□□ -0.44
CCDC88C-203ENST00000389856 UBE2DNLQ8IWF7 75 aa12.27□□□□□ -0.44
CCDC88C-203ENST00000389856 MIR7-3HGQ8N6C7 128 aa12.27□□□□□ -0.44
CCDC88C-203ENST00000389856 RMI2Q96E14 147 aa12.27□□□□□ -0.44
CCDC88C-203ENST00000389856 APLNQ9ULZ1 77 aa12.27□□□□□ -0.44
CCDC88C-203ENST00000389856 LINC00158P58513 81 aa12.26□□□□□ -0.45
CCDC88C-203ENST00000389856 C2orf82Q6UX34 121 aa12.26□□□□□ -0.45
CCDC88C-203ENST00000389856 CKS1BP61024 79 aa12.26□□□□□ -0.45
CCDC88C-203ENST00000389856 DNAH9Q9NYC9 4486 aa12.25□□□□□ -0.45
CCDC88C-203ENST00000389856 SND1-IT1Q9HBX3 110 aa12.25□□□□□ -0.45
CCDC88C-203ENST00000389856 TRACP01848 142 aa12.24□□□□□ -0.45
CCDC88C-203ENST00000389856 RPL28P46779 137 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-203ENST00000389856 NTN5Q8WTR8 489 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-203ENST00000389856 CLEC2BQ92478 149 aa12.23□□□□□ -0.45
CCDC88C-203ENST00000389856 COX17Q14061 63 aa12.22□□□□□ -0.45
CCDC88C-203ENST00000389856 C21orf62-AS1Q17RA5 79 aa12.22□□□□□ -0.45
CCDC88C-203ENST00000389856 CDIP1Q9H305 208 aa12.22□□□□□ -0.45
CCDC88C-203ENST00000389856 IGKV2D-24A0A075B6R9 120 aa12.21□□□□□ -0.46
CCDC88C-203ENST00000389856 MUC7Q8TAX7 377 aa12.21□□□□□ -0.46
CCDC88C-203ENST00000389856 COL7A1Q02388 2944 aa12.21□□□□□ -0.46
CCDC88C-203ENST00000389856 SPAG11BQ08648 103 aa12.2□□□□□ -0.46
CCDC88C-203ENST00000389856 H0YGX0 51 aa12.18□□□□□ -0.46
CCDC88C-203ENST00000389856 Q9HAA7 133 aa12.18□□□□□ -0.46
CCDC88C-203ENST00000389856 IGKV2-28A0A075B6P5 120 aa12.17□□□□□ -0.46
CCDC88C-203ENST00000389856 IGKV2D-28P01615 120 aa12.17□□□□□ -0.46
CCDC88C-203ENST00000389856 KIAA0087Q14695 138 aa12.17□□□□□ -0.46
CCDC88C-203ENST00000389856 F8WDY8 70 aa12.16□□□□□ -0.46
CCDC88C-203ENST00000389856 ZNF561-AS1K7EIQ3 104 aa12.16□□□□□ -0.46
CCDC88C-203ENST00000389856 PFN2P35080 140 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms