RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.54□□□□□ -1.848e-9■■■□□ 18.3
UBE3D-202ENST00000369746 H7C2G1 150 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 ZNF833PQ6ZTB9 187 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 SEC16AO15027 2179 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 RYR2Q92736 4967 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 IGHV1-18A0A0C4DH31 117 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 IGKV3D-7A0A0C4DH55 119 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 TRBV7-4A0A0J9YYF1 115 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 A8MU10 97 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 K7EQG2 157 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 SPTSSBQ8NFR3 76 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 KRTAP4-8Q9BYQ9 185 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 PHLDA3Q9Y5J5 127 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 SMAD5-AS1Q9Y6J3 95 aa3.54□□□□□ -1.84
UBE3D-202ENST00000369746 TRRAPQ9Y4A5 3859 aa3.53□□□□□ -1.84
UBE3D-202ENST00000369746 JMJD7-PLA2G4BH0Y9G9 81 aa3.53□□□□□ -1.84
UBE3D-202ENST00000369746 PROP1O75360 226 aa3.53□□□□□ -1.84
UBE3D-202ENST00000369746 IGHV3-43DP0DP04 118 aa3.53□□□□□ -1.84
UBE3D-202ENST00000369746 IGHV4-30-4P0DP06 118 aa3.53□□□□□ -1.84
UBE3D-202ENST00000369746 ZNF32P17041 273 aa3.53□□□□□ -1.84
UBE3D-202ENST00000369746 A0A087WVE0 104 aa3.53□□□□□ -1.84
UBE3D-202ENST00000369746 IGHV3-38A0A0C4DH36 116 aa3.53□□□□□ -1.84
UBE3D-202ENST00000369746 H0YGX0 51 aa3.53□□□□□ -1.84
UBE3D-202ENST00000369746 CMC4P56277 68 aaPredicted RBP3.53□□□□□ -1.84
UBE3D-202ENST00000369746 KRTAP10-3P60369 221 aa3.53□□□□□ -1.84
UBE3D-202ENST00000369746 KRTAP9-8Q9BYQ0 159 aa3.53□□□□□ -1.84
UBE3D-202ENST00000369746 PRKDCP78527 4128 aaKnown RBP3.53□□□□□ -1.84
UBE3D-202ENST00000369746 CSMD1Q96PZ7 3565 aa3.53□□□□□ -1.84
UBE3D-202ENST00000369746 IGHV4OR15-8A0A075B7B6 117 aa3.52□□□□□ -1.85
UBE3D-202ENST00000369746 A0A087WW49 117 aa3.52□□□□□ -1.85
UBE3D-202ENST00000369746 H3BRN7 92 aa3.52□□□□□ -1.85
UBE3D-202ENST00000369746 M0R1W7 72 aa3.52□□□□□ -1.85
UBE3D-202ENST00000369746 CYP4F30PQ9H0H9 118 aa3.52□□□□□ -1.85
UBE3D-202ENST00000369746 NBEAL1Q6ZS30 2694 aa3.52□□□□□ -1.85
UBE3D-202ENST00000369746 hDV103S1A0JD37 113 aa3.52□□□□□ -1.85
UBE3D-202ENST00000369746 IGHV4-59P01825 116 aa3.52□□□□□ -1.85
UBE3D-202ENST00000369746 ASB16-AS1Q495Z4 193 aa3.52□□□□□ -1.85
UBE3D-202ENST00000369746 Q6ZTC4 211 aa3.52□□□□□ -1.85
UBE3D-202ENST00000369746 TMEM167AQ8TBQ9 72 aa3.52□□□□□ -1.85
UBE3D-202ENST00000369746 KRTAP16-1A8MUX0 517 aa3.51□□□□□ -1.85
UBE3D-202ENST00000369746 NOTCH2NLQ7Z3S9 236 aa3.51□□□□□ -1.85
UBE3D-202ENST00000369746 C8orf49Q96NF6 230 aa3.51□□□□□ -1.85
UBE3D-202ENST00000369746 UBL5Q9BZL1 73 aa3.51□□□□□ -1.85
UBE3D-202ENST00000369746 FREM1Q5H8C1 2179 aa3.51□□□□□ -1.85
UBE3D-202ENST00000369746 ABCA1O95477 2261 aa3.51□□□□□ -1.85
UBE3D-202ENST00000369746 IGKV3D-20A0A0C4DH25 116 aa3.51□□□□□ -1.85
UBE3D-202ENST00000369746 C15orf32Q32M92 178 aa3.51□□□□□ -1.85
UBE3D-202ENST00000369746 LINC00269Q8N2A0 174 aa3.51□□□□□ -1.85
UBE3D-202ENST00000369746 TRAV23DV6A0A075B6W5 121 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 MRPL33O75394 65 aaKnown RBP3.5□□□□□ -1.85
UBE3D-202ENST00000369746 PATE4P0C8F1 98 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 CHTF8P0CG12 524 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 CGB3P0DN86 165 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 CGB7P0DN87 165 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 LINC00574Q9H8X3 128 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 MRPL36Q9P0J6 103 aaKnown RBP3.5□□□□□ -1.85
UBE3D-202ENST00000369746 TRBV6-5A0A0K0K1A5 114 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 ZNF503-AS2A6NEH8 195 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 RPL37AP8A6NKH3 93 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 GAS8-AS1O95177 125 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 Q6ZRP5 223 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 RMI2Q96E14 147 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 ZNRD1Q9P1U0 126 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 HRNRQ86YZ3 2850 aaPredicted RBP3.5□□□□□ -1.85
UBE3D-202ENST00000369746 SONP18583 2426 aaKnown RBP3.5□□□□□ -1.85
UBE3D-202ENST00000369746 IGLV5-45A0A087WSX0 123 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 SYCNQ0VAF6 134 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 C17orf58Q2M2W7 97 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 Q8N6K4 173 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 TMEM254Q8TBM7 123 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 NDUFA12Q9UI09 145 aa3.5□□□□□ -1.85
UBE3D-202ENST00000369746 C16orf90A8MZG2 172 aa3.49□□□□□ -1.85
UBE3D-202ENST00000369746 H3BQ85 93 aa3.49□□□□□ -1.85
UBE3D-202ENST00000369746 C9orf66Q5T8R8 295 aa3.49□□□□□ -1.85
UBE3D-202ENST00000369746 LINC00167Q96N53 147 aa3.49□□□□□ -1.85
UBE3D-202ENST00000369746 RETNLBQ9BQ08 111 aa3.49□□□□□ -1.85
UBE3D-202ENST00000369746 KAAG1Q9UBP8 84 aa3.49□□□□□ -1.85
UBE3D-202ENST00000369746 LENEPQ9Y5L5 61 aa3.49□□□□□ -1.85
UBE3D-202ENST00000369746 DCHS2Q6V1P9 2916 aa3.49□□□□□ -1.85
UBE3D-202ENST00000369746 DNAH6Q9C0G6 4158 aa3.49□□□□□ -1.85
UBE3D-202ENST00000369746 POLR2KP53803 58 aaKnown RBP3.49□□□□□ -1.85
UBE3D-202ENST00000369746 MUC4Q99102 2169 aa3.48□□□□□ -1.85
UBE3D-202ENST00000369746 IGHV7-4-1A0A0J9YVY3 117 aa3.48□□□□□ -1.85
UBE3D-202ENST00000369746 NDUFA1O15239 70 aa3.48□□□□□ -1.85
UBE3D-202ENST00000369746 IGHV3-30-3P0DP02 117 aa3.48□□□□□ -1.85
UBE3D-202ENST00000369746 PDE6GP18545 87 aa3.48□□□□□ -1.85
UBE3D-202ENST00000369746 LIMD2Q9BT23 127 aa3.48□□□□□ -1.85
UBE3D-202ENST00000369746 PKD1L1Q8TDX9 2849 aa3.48□□□□□ -1.85
UBE3D-202ENST00000369746 CTSGP08311 255 aa3.48□□□□□ -1.85
UBE3D-202ENST00000369746 SPANXN1Q5VSR9 72 aa3.48□□□□□ -1.85
UBE3D-202ENST00000369746 MGAM2Q2M2H8 2515 aa3.48□□□□□ -1.85
UBE3D-202ENST00000369746 KMT2CQ8NEZ4 4911 aaKnown RBP3.48□□□□□ -1.85
UBE3D-202ENST00000369746 MALRD1Q5VYJ5 2156 aa3.48□□□□□ -1.85
UBE3D-202ENST00000369746 HMCN1Q96RW7 5635 aa3.47□□□□□ -1.85
UBE3D-202ENST00000369746 SAA1P0DJI8 122 aaPredicted RBP3.47□□□□□ -1.85
UBE3D-202ENST00000369746 DEFB112Q30KQ8 113 aa3.47□□□□□ -1.85
UBE3D-202ENST00000369746 TRAV22A0A0B4J277 110 aa3.47□□□□□ -1.85
UBE3D-202ENST00000369746 IGHV4-38-2P0DP08 117 aa3.47□□□□□ -1.85
UBE3D-202ENST00000369746 RPL39P5Q59GN2 51 aa3.47□□□□□ -1.85
UBE3D-202ENST00000369746 ENHOQ6UWT2 76 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms