RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CCKP06307 115 aa10.5□□□□□ -0.73
COL17A1-201ENST00000353479 SCXQ7RTU7 201 aa10.5□□□□□ -0.73
COL17A1-201ENST00000353479 F8P00451 2351 aa10.5□□□□□ -0.73
COL17A1-201ENST00000353479 FLNBO75369 2602 aaKnown RBP10.5□□□□□ -0.73
COL17A1-201ENST00000353479 LINC00643Q86TS7 51 aa10.49□□□□□ -0.73
COL17A1-201ENST00000353479 IGLV5-52A0A0A0MRZ9 124 aa10.49□□□□□ -0.73
COL17A1-201ENST00000353479 ZNF706Q9Y5V0 76 aaPredicted RBP10.49□□□□□ -0.73
COL17A1-201ENST00000353479 HECTD1Q9ULT8 2610 aa10.48□□□□□ -0.73
COL17A1-201ENST00000353479 UPK3BQ9BT76 320 aa10.48□□□□□ -0.73
COL17A1-201ENST00000353479 PRR3P79522 188 aaKnown RBP10.48□□□□□ -0.73
COL17A1-201ENST00000353479 SS18L2Q9UHA2 77 aa10.48□□□□□ -0.73
COL17A1-201ENST00000353479 C3orf84H3BNL1 204 aa10.48□□□□□ -0.73
COL17A1-201ENST00000353479 LST1O00453 97 aa10.47□□□□□ -0.73
COL17A1-201ENST00000353479 HRCT1Q6UXD1 115 aa10.47□□□□□ -0.73
COL17A1-201ENST00000353479 SBSPONQ8IVN8 264 aa10.47□□□□□ -0.73
COL17A1-201ENST00000353479 C1orf134Q5TEV5 83 aa10.46□□□□□ -0.73
COL17A1-201ENST00000353479 TRBV10-3A0A0K0K1G6 114 aa10.46□□□□□ -0.74
COL17A1-201ENST00000353479 IGLV9-49A0A0B4J1Y8 123 aa10.46□□□□□ -0.74
COL17A1-201ENST00000353479 SDIM1Q6ZPB5 146 aa10.45□□□□□ -0.74
COL17A1-201ENST00000353479 ADAMTSL4-AS1Q5T5F5 129 aa10.45□□□□□ -0.74
COL17A1-201ENST00000353479 X6R8D5 127 aa10.45□□□□□ -0.74
COL17A1-201ENST00000353479 MKI67P46013 3256 aaKnown RBP10.44□□□□□ -0.74
COL17A1-201ENST00000353479 B5MCH6 92 aa10.44□□□□□ -0.74
COL17A1-201ENST00000353479 LINC00315P59091 139 aa10.44□□□□□ -0.74
COL17A1-201ENST00000353479 CHKB-CPT1BH3BT56 60 aa10.43□□□□□ -0.74
COL17A1-201ENST00000353479 SPINK6Q6UWN8 80 aa10.43□□□□□ -0.74
COL17A1-201ENST00000353479 A0A096LNT2 108 aa10.43□□□□□ -0.74
COL17A1-201ENST00000353479 NDUFC2-KCTD14E9PQ53 114 aa10.42□□□□□ -0.74
COL17A1-201ENST00000353479 WFDC9Q8NEX5 89 aa10.42□□□□□ -0.74
COL17A1-201ENST00000353479 IGKV4-1P06312 121 aa10.42□□□□□ -0.74
COL17A1-201ENST00000353479 SMIM20Q8N5G0 67 aa10.42□□□□□ -0.74
COL17A1-201ENST00000353479 ESRGQ1W209 222 aa10.42□□□□□ -0.74
COL17A1-201ENST00000353479 ENHOQ6UWT2 76 aa10.42□□□□□ -0.74
COL17A1-201ENST00000353479 NTM-AS1Q6ZSK4 140 aa10.42□□□□□ -0.74
COL17A1-201ENST00000353479 LAMA3Q16787 3333 aa10.41□□□□□ -0.74
COL17A1-201ENST00000353479 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.41□□□□□ -0.74
COL17A1-201ENST00000353479 REG3GQ6UW15 175 aa10.41□□□□□ -0.74
COL17A1-201ENST00000353479 C2orf48Q96LS8 159 aa10.4□□□□□ -0.74
COL17A1-201ENST00000353479 MDFIQ99750 246 aa10.4□□□□□ -0.74
COL17A1-201ENST00000353479 KLK9Q2XQG4 91 aa10.4□□□□□ -0.74
COL17A1-201ENST00000353479 Q6ZRU5 148 aa10.4□□□□□ -0.75
COL17A1-201ENST00000353479 RPL28P46779 137 aaKnown RBP10.39□□□□□ -0.75
COL17A1-201ENST00000353479 Q9UF83 564 aa10.38□□□□□ -0.75
COL17A1-201ENST00000353479 MT-ATP8P03928 68 aa10.38□□□□□ -0.75
COL17A1-201ENST00000353479 NDUFV3P56181 108 aaKnown RBP10.38□□□□□ -0.75
COL17A1-201ENST00000353479 F8WDY8 70 aa10.37□□□□□ -0.75
COL17A1-201ENST00000353479 LINC01556Q5JQF7 62 aa10.36□□□□□ -0.75
COL17A1-201ENST00000353479 LINC01561Q8N1V8 128 aa10.36□□□□□ -0.75
COL17A1-201ENST00000353479 ATP5EP2Q5VTU8 51 aa10.35□□□□□ -0.75
COL17A1-201ENST00000353479 MRPL55Q7Z7F7 128 aaKnown RBP10.35□□□□□ -0.75
COL17A1-201ENST00000353479 Q8N814 137 aa10.35□□□□□ -0.75
COL17A1-201ENST00000353479 TMEM258P61165 79 aa10.35□□□□□ -0.75
COL17A1-201ENST00000353479 BRCA2P51587 3418 aa10.34□□□□□ -0.75
COL17A1-201ENST00000353479 Q8NAQ8 132 aa10.34□□□□□ -0.75
COL17A1-201ENST00000353479 A0A087WYN8 130 aa10.34□□□□□ -0.75
COL17A1-201ENST00000353479 C10orf25Q5T742 122 aa10.34□□□□□ -0.75
COL17A1-201ENST00000353479 C1orf137Q5JT78 98 aa10.34□□□□□ -0.75
COL17A1-201ENST00000353479 LINC01546A6NGU7 62 aa10.33□□□□□ -0.76
COL17A1-201ENST00000353479 TRANK1O15050 2925 aa10.32□□□□□ -0.76
COL17A1-201ENST00000353479 IGHV3OR16-9A0A0B4J2B5 98 aa10.32□□□□□ -0.76
COL17A1-201ENST00000353479 NDUFC2O95298 119 aa10.32□□□□□ -0.76
COL17A1-201ENST00000353479 H3BNG1 76 aa10.31□□□□□ -0.76
COL17A1-201ENST00000353479 WFDC13Q8IUB5 93 aa10.31□□□□□ -0.76
COL17A1-201ENST00000353479 Q8N3U1 123 aa10.3□□□□□ -0.76
COL17A1-201ENST00000353479 IGLV5-39A0A0G2JS06 123 aa10.29□□□□□ -0.76
COL17A1-201ENST00000353479 CIRBP-AS1Q8TBR5 109 aa10.29□□□□□ -0.76
COL17A1-201ENST00000353479 A8MTW9 85 aa10.29□□□□□ -0.76
COL17A1-201ENST00000353479 KRTAP1-3Q8IUG1 177 aa10.29□□□□□ -0.76
COL17A1-201ENST00000353479 C5orf47Q569G3 176 aa10.28□□□□□ -0.76
COL17A1-201ENST00000353479 C20orf197Q8N268 126 aa10.28□□□□□ -0.76
COL17A1-201ENST00000353479 PRYO14603 147 aa10.27□□□□□ -0.77
COL17A1-201ENST00000353479 KRTAP10-3P60369 221 aa10.27□□□□□ -0.77
COL17A1-201ENST00000353479 MUC4Q99102 2169 aa10.26□□□□□ -0.77
COL17A1-201ENST00000353479 C22orf24Q9Y442 160 aa10.26□□□□□ -0.77
COL17A1-201ENST00000353479 LINC00337Q8N6G1 96 aa10.26□□□□□ -0.77
COL17A1-201ENST00000353479 PRLHP81277 87 aa10.25□□□□□ -0.77
COL17A1-201ENST00000353479 KRTAP10-11P60412 298 aa10.25□□□□□ -0.77
COL17A1-201ENST00000353479 Q9BRP9 147 aa10.24□□□□□ -0.77
COL17A1-201ENST00000353479 LINC00588Q9Y4M8 146 aa10.24□□□□□ -0.77
COL17A1-201ENST00000353479 CASC2Q6XLA1 102 aa10.24□□□□□ -0.77
COL17A1-201ENST00000353479 SVIPQ8NHG7 77 aa10.24□□□□□ -0.77
COL17A1-201ENST00000353479 C6orf48Q9UBA6 75 aa10.23□□□□□ -0.77
COL17A1-201ENST00000353479 CSNK1G2-AS1Q8NCQ2 148 aa10.21□□□□□ -0.77
COL17A1-201ENST00000353479 LINC00575Q6W349 94 aa10.21□□□□□ -0.78
COL17A1-201ENST00000353479 IGLV5-45A0A087WSX0 123 aa10.2□□□□□ -0.78
COL17A1-201ENST00000353479 K7EIL1 84 aa10.2□□□□□ -0.78
COL17A1-201ENST00000353479 KRTAP1-1Q07627 177 aa10.2□□□□□ -0.78
COL17A1-201ENST00000353479 NBDYA0A0U1RRE5 68 aa10.2□□□□□ -0.78
COL17A1-201ENST00000353479 HELZ2Q9BYK8 2649 aaKnown RBP10.18□□□□□ -0.78
COL17A1-201ENST00000353479 PRUNE2Q8WUY3 3088 aa10.18□□□□□ -0.78
COL17A1-201ENST00000353479 UQCRQO14949 82 aa10.18□□□□□ -0.78
COL17A1-201ENST00000353479 Q6JHZ5 121 aa10.17□□□□□ -0.78
COL17A1-201ENST00000353479 FLNAP21333 2647 aaKnown RBP10.17□□□□□ -0.78
COL17A1-201ENST00000353479 SMCR5Q8TEV8 140 aa10.17□□□□□ -0.78
COL17A1-201ENST00000353479 XGP55808 180 aa10.16□□□□□ -0.78
COL17A1-201ENST00000353479 LINC00167Q96N53 147 aa10.16□□□□□ -0.78
COL17A1-201ENST00000353479 FAM19A3Q7Z5A8 133 aa10.16□□□□□ -0.78
COL17A1-201ENST00000353479 WWC2-AS2Q96NR7 200 aa10.15□□□□□ -0.78
COL17A1-201ENST00000353479 SEC61GP60059 68 aa10.15□□□□□ -0.79
COL17A1-201ENST00000353479 IMUPQ9GZP8 106 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms