RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 PRR3P79522 188 aaKnown RBP7.76□□□□□ -1.17
SYNE1-202ENST00000347037 NF1P21359 2839 aa7.76□□□□□ -1.17
SYNE1-202ENST00000347037 DEFB130BP0DP73 79 aa7.76□□□□□ -1.17
SYNE1-202ENST00000347037 DEFB130AP0DP74 79 aa7.76□□□□□ -1.17
SYNE1-202ENST00000347037 Q6JHZ5 121 aa7.76□□□□□ -1.17
SYNE1-202ENST00000347037 TRBV6-4A0A1B0GX49 114 aa7.75□□□□□ -1.17
SYNE1-202ENST00000347037 A0A087WZ39 114 aa7.75□□□□□ -1.17
SYNE1-202ENST00000347037 TRAV25A0A0B4J276 109 aa7.75□□□□□ -1.17
SYNE1-202ENST00000347037 CRYGAP11844 174 aa7.75□□□□□ -1.17
SYNE1-202ENST00000347037 WFDC9Q8NEX5 89 aa7.75□□□□□ -1.17
SYNE1-202ENST00000347037 FN1P02751 2386 aaKnown RBP7.75□□□□□ -1.17
SYNE1-202ENST00000347037 SETXQ7Z333 2677 aaKnown RBP7.74□□□□□ -1.17
SYNE1-202ENST00000347037 A0A096LPF7 62 aa7.74□□□□□ -1.17
SYNE1-202ENST00000347037 PLAC8L1A1L4L8 177 aa7.74□□□□□ -1.17
SYNE1-202ENST00000347037 USP17L23D6RBM5 183 aa7.74□□□□□ -1.17
SYNE1-202ENST00000347037 GIG44P09565 113 aaPredicted RBP7.74□□□□□ -1.17
SYNE1-202ENST00000347037 TMEM86BQ8N661 226 aa7.74□□□□□ -1.17
SYNE1-202ENST00000347037 LINC00959A0A1B0GUT2 108 aa7.74□□□□□ -1.17
SYNE1-202ENST00000347037 CCDC168Q8NDH2 2452 aa7.74□□□□□ -1.17
SYNE1-202ENST00000347037 LINC01561Q8N1V8 128 aa7.73□□□□□ -1.17
SYNE1-202ENST00000347037 KRTAP10-9P60411 292 aa7.73□□□□□ -1.17
SYNE1-202ENST00000347037 FAM19A5Q7Z5A7 132 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-202ENST00000347037 CR1P17927 2039 aa7.73□□□□□ -1.17
SYNE1-202ENST00000347037 SERP2Q8N6R1 65 aa7.73□□□□□ -1.17
SYNE1-202ENST00000347037 ZFYVE26Q68DK2 2539 aa7.73□□□□□ -1.17
SYNE1-202ENST00000347037 HILS1P60008 231 aa7.72□□□□□ -1.17
SYNE1-202ENST00000347037 KIR2DL5BQ8NHK3 375 aa7.72□□□□□ -1.17
SYNE1-202ENST00000347037 OBSCN-AS1Q96MR7 158 aa7.72□□□□□ -1.17
SYNE1-202ENST00000347037 FHL2Q14192 279 aa7.72□□□□□ -1.17
SYNE1-202ENST00000347037 PDZD2O15018 2839 aa7.72□□□□□ -1.17
SYNE1-202ENST00000347037 ANK3Q12955 4377 aaKnown RBP7.72□□□□□ -1.17
SYNE1-202ENST00000347037 CCKP06307 115 aa7.71□□□□□ -1.18
SYNE1-202ENST00000347037 SS18Q15532 418 aa7.71□□□□□ -1.18
SYNE1-202ENST00000347037 ZNF462Q96JM2 2506 aa7.71□□□□□ -1.18
SYNE1-202ENST00000347037 APCP25054 2843 aa7.71□□□□□ -1.18
SYNE1-202ENST00000347037 TRAV23DV6A0A075B6W5 121 aa7.71□□□□□ -1.18
SYNE1-202ENST00000347037 GYPEP15421 78 aa7.7□□□□□ -1.18
SYNE1-202ENST00000347037 DSCR8Q96T75 97 aa7.7□□□□□ -1.18
SYNE1-202ENST00000347037 DNAJC9-AS1A6NH13 148 aa7.69□□□□□ -1.18
SYNE1-202ENST00000347037 IGLV10-54A0A075B6I4 117 aa7.69□□□□□ -1.18
SYNE1-202ENST00000347037 ENHOQ6UWT2 76 aa7.69□□□□□ -1.18
SYNE1-202ENST00000347037 Q8N814 137 aa7.69□□□□□ -1.18
SYNE1-202ENST00000347037 LY6G6DO95868 133 aa7.68□□□□□ -1.18
SYNE1-202ENST00000347037 GHRHP01286 108 aa7.68□□□□□ -1.18
SYNE1-202ENST00000347037 C9orf116Q5BN46 136 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-202ENST00000347037 FAM19A1Q7Z5A9 133 aa7.68□□□□□ -1.18
SYNE1-202ENST00000347037 JMJD7-PLA2G4BH0Y9G9 81 aa7.67□□□□□ -1.18
SYNE1-202ENST00000347037 TMEM258P61165 79 aa7.67□□□□□ -1.18
SYNE1-202ENST00000347037 S100A7L2Q5SY68 101 aa7.67□□□□□ -1.18
SYNE1-202ENST00000347037 TMEM256-PLSCR3K7ERE1 68 aa7.67□□□□□ -1.18
SYNE1-202ENST00000347037 DEFB113Q30KQ7 82 aa7.67□□□□□ -1.18
SYNE1-202ENST00000347037 Q8IZM0 81 aa7.67□□□□□ -1.18
SYNE1-202ENST00000347037 SMIM9A6NGZ8 99 aa7.66□□□□□ -1.18
SYNE1-202ENST00000347037 NBEAL2Q6ZNJ1 2754 aa7.66□□□□□ -1.18
SYNE1-202ENST00000347037 NANOS2P60321 138 aaKnown RBP7.66□□□□□ -1.18
SYNE1-202ENST00000347037 C6orf99Q4VX62 202 aa7.66□□□□□ -1.18
SYNE1-202ENST00000347037 CSNK1G2-AS1Q8NCQ2 148 aa7.66□□□□□ -1.18
SYNE1-202ENST00000347037 DPH3Q96FX2 82 aa7.66□□□□□ -1.18
SYNE1-202ENST00000347037 UPK3BQ9BT76 320 aa7.66□□□□□ -1.18
SYNE1-202ENST00000347037 CMC4P56277 68 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-202ENST00000347037 LINC00269Q8N2A0 174 aa7.65□□□□□ -1.18
SYNE1-202ENST00000347037 UBL5Q9BZL1 73 aa7.65□□□□□ -1.18
SYNE1-202ENST00000347037 GCN1Q92616 2671 aaKnown RBP7.65□□□□□ -1.19
SYNE1-202ENST00000347037 ESM1Q9NQ30 184 aa7.65□□□□□ -1.19
SYNE1-202ENST00000347037 LAMTOR3Q9UHA4 124 aa7.64□□□□□ -1.19
SYNE1-202ENST00000347037 MTORP42345 2549 aa7.64□□□□□ -1.19
SYNE1-202ENST00000347037 Q8N3U1 123 aa7.64□□□□□ -1.19
SYNE1-202ENST00000347037 C19orf73Q9NVV2 129 aa7.64□□□□□ -1.19
SYNE1-202ENST00000347037 ANGP03950 147 aaKnown RBP7.63□□□□□ -1.19
SYNE1-202ENST00000347037 RPS28P62857 69 aaKnown RBP7.63□□□□□ -1.19
SYNE1-202ENST00000347037 C5orf47Q569G3 176 aa7.63□□□□□ -1.19
SYNE1-202ENST00000347037 C20orf197Q8N268 126 aa7.63□□□□□ -1.19
SYNE1-202ENST00000347037 ITPR3Q14573 2671 aa7.63□□□□□ -1.19
SYNE1-202ENST00000347037 IGLV1-51P01701 117 aa7.62□□□□□ -1.19
SYNE1-202ENST00000347037 CHCHD10Q8WYQ3 142 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-202ENST00000347037 LINC00167Q96N53 147 aa7.62□□□□□ -1.19
SYNE1-202ENST00000347037 KRTAP1-3Q8IUG1 177 aa7.62□□□□□ -1.19
SYNE1-202ENST00000347037 DEFB4AO15263 64 aa7.61□□□□□ -1.19
SYNE1-202ENST00000347037 HAMPP81172 84 aa7.61□□□□□ -1.19
SYNE1-202ENST00000347037 ATP5EP2Q5VTU8 51 aa7.61□□□□□ -1.19
SYNE1-202ENST00000347037 OXTP01178 125 aa7.61□□□□□ -1.19
SYNE1-202ENST00000347037 LINC01006Q8NI28 216 aa7.61□□□□□ -1.19
SYNE1-202ENST00000347037 FLNAP21333 2647 aaKnown RBP7.61□□□□□ -1.19
SYNE1-202ENST00000347037 A0A1B0GUV1 79 aa7.61□□□□□ -1.19
SYNE1-202ENST00000347037 RBM3P98179 157 aaKnown RBP7.61□□□□□ -1.19
SYNE1-202ENST00000347037 Q8NDZ9 215 aa7.61□□□□□ -1.19
SYNE1-202ENST00000347037 ACANP16112 2415 aa7.6□□□□□ -1.19
SYNE1-202ENST00000347037 KIAA0087Q14695 138 aa7.6□□□□□ -1.19
SYNE1-202ENST00000347037 CD164L2Q6UWJ8 174 aa7.6□□□□□ -1.19
SYNE1-202ENST00000347037 WFDC11Q8NEX6 87 aa7.6□□□□□ -1.19
SYNE1-202ENST00000347037 PRO0255Q9UI72 69 aa7.6□□□□□ -1.19
SYNE1-202ENST00000347037 NDUFC2O95298 119 aa7.59□□□□□ -1.19
SYNE1-202ENST00000347037 C6orf223Q8N319 242 aa7.59□□□□□ -1.19
SYNE1-202ENST00000347037 REG3AQ06141 175 aa7.59□□□□□ -1.19
SYNE1-202ENST00000347037 LINC00575Q6W349 94 aa7.59□□□□□ -1.2
SYNE1-202ENST00000347037 M0R2N4 97 aa7.58□□□□□ -1.2
SYNE1-202ENST00000347037 COX17Q14061 63 aa7.58□□□□□ -1.2
SYNE1-202ENST00000347037 C4orf26Q17RF5 130 aa7.58□□□□□ -1.2
SYNE1-202ENST00000347037 C10orf25Q5T742 122 aa7.58□□□□□ -1.2
SYNE1-202ENST00000347037 UNQ6190/PRO20217Q6UXQ8 127 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms