RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CCL18P55774 89 aa9.03□□□□□ -0.96
HMGB1-202ENST00000339872 SFTA2Q6UW10 78 aa9.03□□□□□ -0.96
HMGB1-202ENST00000339872 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.02□□□□□ -0.97
HMGB1-202ENST00000339872 CFAP161Q6P656 301 aa9.02□□□□□ -0.97
HMGB1-202ENST00000339872 C2orf82Q6UX34 121 aa9.02□□□□□ -0.97
HMGB1-202ENST00000339872 LINC00308Q8TCZ7 52 aa9.02□□□□□ -0.97
HMGB1-202ENST00000339872 NHLRC4P0CG21 123 aaPredicted RBP9.02□□□□□ -0.97
HMGB1-202ENST00000339872 DNAH10OSP0CZ25 163 aa9.02□□□□□ -0.97
HMGB1-202ENST00000339872 CKS1BP61024 79 aa9.02□□□□□ -0.97
HMGB1-202ENST00000339872 A0A0B4J2C4 111 aa9.01□□□□□ -0.97
HMGB1-202ENST00000339872 FABP2P12104 132 aa9.01□□□□□ -0.97
HMGB1-202ENST00000339872 UBE2V1Q13404 147 aa9.01□□□□□ -0.97
HMGB1-202ENST00000339872 KIAA0087Q14695 138 aa9.01□□□□□ -0.97
HMGB1-202ENST00000339872 PRO1854Q9UHT4 67 aa9.01□□□□□ -0.97
HMGB1-202ENST00000339872 TSPAN13O95857 204 aa9□□□□□ -0.97
HMGB1-202ENST00000339872 DNHD1Q96M86 4753 aa9□□□□□ -0.97
HMGB1-202ENST00000339872 IBA57-AS1B1ANH7 110 aa9□□□□□ -0.97
HMGB1-202ENST00000339872 PFN2P35080 140 aa9□□□□□ -0.97
HMGB1-202ENST00000339872 LINC00158P58513 81 aa9□□□□□ -0.97
HMGB1-202ENST00000339872 SOSTDC1Q6X4U4 206 aa9□□□□□ -0.97
HMGB1-202ENST00000339872 MIR7-3HGQ8N6C7 128 aa9□□□□□ -0.97
HMGB1-202ENST00000339872 STAB2Q8WWQ8 2551 aa9□□□□□ -0.97
HMGB1-202ENST00000339872 CXCL5P42830 114 aa8.99□□□□□ -0.97
HMGB1-202ENST00000339872 SPAG11BQ08648 103 aa8.99□□□□□ -0.97
HMGB1-202ENST00000339872 COPS9Q8WXC6 57 aa8.99□□□□□ -0.97
HMGB1-202ENST00000339872 ERG28Q9UKR5 140 aa8.99□□□□□ -0.97
HMGB1-202ENST00000339872 GAGE10A6NGK3 116 aa8.99□□□□□ -0.97
HMGB1-202ENST00000339872 KLK5Q9Y337 293 aaPredicted RBP8.99□□□□□ -0.97
HMGB1-202ENST00000339872 SPCS1Q9Y6A9 102 aa8.99□□□□□ -0.97
HMGB1-202ENST00000339872 C1orf43Q9BWL3 253 aa8.98□□□□□ -0.97
HMGB1-202ENST00000339872 K7EP34 96 aa8.98□□□□□ -0.97
HMGB1-202ENST00000339872 KRTAP21-3Q3LHN1 58 aa8.98□□□□□ -0.97
HMGB1-202ENST00000339872 GTF2H5Q6ZYL4 71 aa8.98□□□□□ -0.97
HMGB1-202ENST00000339872 H7C2G1 150 aa8.97□□□□□ -0.97
HMGB1-202ENST00000339872 KRTAP26-1Q6PEX3 210 aa8.97□□□□□ -0.97
HMGB1-202ENST00000339872 LINC00526Q96FQ7 95 aa8.97□□□□□ -0.97
HMGB1-202ENST00000339872 Q9HAA7 133 aa8.97□□□□□ -0.97
HMGB1-202ENST00000339872 IGKV2D-24A0A075B6R9 120 aa8.97□□□□□ -0.97
HMGB1-202ENST00000339872 C6orf223Q8N319 242 aa8.97□□□□□ -0.97
HMGB1-202ENST00000339872 UPK3BQ9BT76 320 aa8.96□□□□□ -0.97
HMGB1-202ENST00000339872 LOC107984156A0A0G2JMH3 177 aa8.95□□□□□ -0.98
HMGB1-202ENST00000339872 Q1RN00 199 aa8.95□□□□□ -0.98
HMGB1-202ENST00000339872 ARL17AQ8IVW1 177 aa8.95□□□□□ -0.98
HMGB1-202ENST00000339872 APLNQ9ULZ1 77 aa8.94□□□□□ -0.98
HMGB1-202ENST00000339872 PPDPFQ9H3Y8 114 aa8.94□□□□□ -0.98
HMGB1-202ENST00000339872 HIGD2BQ4VC39 106 aa8.93□□□□□ -0.98
HMGB1-202ENST00000339872 C9orf116Q5BN46 136 aaPredicted RBP8.93□□□□□ -0.98
HMGB1-202ENST00000339872 C10orf25Q5T742 122 aa8.93□□□□□ -0.98
HMGB1-202ENST00000339872 UNQ6190/PRO20217Q6UXQ8 127 aa8.93□□□□□ -0.98
HMGB1-202ENST00000339872 RPL13AP40429 203 aaKnown RBP8.93□□□□□ -0.98
HMGB1-202ENST00000339872 PSMB2P49721 201 aa8.93□□□□□ -0.98
HMGB1-202ENST00000339872 PRKDCP78527 4128 aaKnown RBP8.93□□□□□ -0.98
HMGB1-202ENST00000339872 UBE2DNLQ8IWF7 75 aa8.92□□□□□ -0.98
HMGB1-202ENST00000339872 SND1-IT1Q9HBX3 110 aa8.92□□□□□ -0.98
HMGB1-202ENST00000339872 MEGF8Q7Z7M0 2845 aa8.92□□□□□ -0.98
HMGB1-202ENST00000339872 NUPR2A6NF83 97 aa8.92□□□□□ -0.98
HMGB1-202ENST00000339872 ZNF561-AS1K7EIQ3 104 aa8.92□□□□□ -0.98
HMGB1-202ENST00000339872 COX17Q14061 63 aa8.92□□□□□ -0.98
HMGB1-202ENST00000339872 C15orf56Q8N910 161 aa8.92□□□□□ -0.98
HMGB1-202ENST00000339872 NTN5Q8WTR8 489 aaPredicted RBP8.92□□□□□ -0.98
HMGB1-202ENST00000339872 LYRM7Q5U5X0 104 aa8.91□□□□□ -0.98
HMGB1-202ENST00000339872 SCGB1C2P0DMR2 95 aa8.89□□□□□ -0.99
HMGB1-202ENST00000339872 H3BMG7 143 aa8.89□□□□□ -0.99
HMGB1-202ENST00000339872 CAMK2N2Q96S95 79 aa8.89□□□□□ -0.99
HMGB1-202ENST00000339872 C6orf48Q9UBA6 75 aa8.88□□□□□ -0.99
HMGB1-202ENST00000339872 TRIAP1O43715 76 aa8.88□□□□□ -0.99
HMGB1-202ENST00000339872 RMI2Q96E14 147 aa8.88□□□□□ -0.99
HMGB1-202ENST00000339872 IGKV2-28A0A075B6P5 120 aa8.87□□□□□ -0.99
HMGB1-202ENST00000339872 GVQW2A0A096LPI5 108 aaPredicted RBP8.87□□□□□ -0.99
HMGB1-202ENST00000339872 IGKV2D-28P01615 120 aa8.87□□□□□ -0.99
HMGB1-202ENST00000339872 TRBV30A0A0K0K1B3 111 aa8.87□□□□□ -0.99
HMGB1-202ENST00000339872 TCL1BO95988 128 aa8.87□□□□□ -0.99
HMGB1-202ENST00000339872 LINC00337Q8N6G1 96 aa8.86□□□□□ -0.99
HMGB1-202ENST00000339872 TRAV13-2A0A0B4J235 113 aa8.86□□□□□ -0.99
HMGB1-202ENST00000339872 CASC10Q5T4H9 136 aa8.86□□□□□ -0.99
HMGB1-202ENST00000339872 Q6ZRU5 148 aa8.86□□□□□ -0.99
HMGB1-202ENST00000339872 C2orf48Q96LS8 159 aa8.86□□□□□ -0.99
HMGB1-202ENST00000339872 KRTAP1-5Q9BYS1 174 aa8.86□□□□□ -0.99
HMGB1-202ENST00000339872 CSMD3Q7Z407 3707 aa8.86□□□□□ -0.99
HMGB1-202ENST00000339872 LYSTQ99698 3801 aa8.85□□□□□ -0.99
HMGB1-202ENST00000339872 TRBV20-1A0A075B6N2 111 aa8.85□□□□□ -0.99
HMGB1-202ENST00000339872 DYNC2H1Q8NCM8 4307 aaKnown RBP8.85□□□□□ -0.99
HMGB1-202ENST00000339872 MTURNQ8N3F0 131 aa8.84□□□□□ -0.99
HMGB1-202ENST00000339872 MUC7Q8TAX7 377 aa8.84□□□□□ -0.99
HMGB1-202ENST00000339872 COX6CP09669 75 aa8.83□□□□□ -1
HMGB1-202ENST00000339872 USP17L23D6RBM5 183 aa8.83□□□□□ -1
HMGB1-202ENST00000339872 OR13C6PQ8NH95 151 aa8.82□□□□□ -1
HMGB1-202ENST00000339872 DNAH1Q9P2D7 4330 aa8.82□□□□□ -1
HMGB1-202ENST00000339872 F8WDY8 70 aa8.81□□□□□ -1
HMGB1-202ENST00000339872 LECT2O14960 151 aa8.81□□□□□ -1
HMGB1-202ENST00000339872 NDUFC2O95298 119 aa8.81□□□□□ -1
HMGB1-202ENST00000339872 PRR3P79522 188 aaKnown RBP8.81□□□□□ -1
HMGB1-202ENST00000339872 SYCNQ0VAF6 134 aa8.81□□□□□ -1
HMGB1-202ENST00000339872 F8W1H4 67 aa8.8□□□□□ -1
HMGB1-202ENST00000339872 ATXN8Q156A1 80 aa8.8□□□□□ -1
HMGB1-202ENST00000339872 Q8NDZ9 215 aa8.8□□□□□ -1
HMGB1-202ENST00000339872 CLEC2BQ92478 149 aa8.8□□□□□ -1
HMGB1-202ENST00000339872 XAGE1AQ9HD64 81 aa8.8□□□□□ -1
HMGB1-202ENST00000339872 PRO0461Q9UI25 63 aa8.8□□□□□ -1
HMGB1-202ENST00000339872 DNAH7Q8WXX0 4024 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms