RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 A6NED7 52 aa5.46□□□□□ -1.53
SCN9A-201ENST00000303354 MUC7Q8TAX7 377 aa5.46□□□□□ -1.53
SCN9A-201ENST00000303354 SOSTDC1Q6X4U4 206 aa5.46□□□□□ -1.54
SCN9A-201ENST00000303354 HCG22E2RYF7 251 aa5.46□□□□□ -1.54
SCN9A-201ENST00000303354 TRBV30A0A0K0K1B3 111 aa5.46□□□□□ -1.54
SCN9A-201ENST00000303354 EGFEM1PQ0D2K5 195 aa5.46□□□□□ -1.54
SCN9A-201ENST00000303354 PTPRSQ13332 1948 aa5.45□□□□□ -1.54
SCN9A-201ENST00000303354 NDUFC2-KCTD14E9PQ53 114 aa5.45□□□□□ -1.54
SCN9A-201ENST00000303354 MRPS36P82909 103 aaKnown RBP5.45□□□□□ -1.54
SCN9A-201ENST00000303354 COX17Q14061 63 aa5.45□□□□□ -1.54
SCN9A-201ENST00000303354 TRBV7-6A0A0J9YX20 115 aa5.45□□□□□ -1.54
SCN9A-201ENST00000303354 IGIPA6NJ69 53 aa5.45□□□□□ -1.54
SCN9A-201ENST00000303354 PRR15LQ9BU68 103 aa5.45□□□□□ -1.54
SCN9A-201ENST00000303354 Q8N814 137 aa5.45□□□□□ -1.54
SCN9A-201ENST00000303354 SHANK1Q9Y566 2161 aa5.44□□□□□ -1.54
SCN9A-201ENST00000303354 ADAMTS20P59510 1910 aa5.44□□□□□ -1.54
SCN9A-201ENST00000303354 TYMSOSQ8TAI1 123 aa5.44□□□□□ -1.54
SCN9A-201ENST00000303354 DNAH10OSP0CZ25 163 aa5.44□□□□□ -1.54
SCN9A-201ENST00000303354 FAM208BQ5VWN6 2430 aa5.44□□□□□ -1.54
SCN9A-201ENST00000303354 C7orf65Q6ZTY9 151 aa5.44□□□□□ -1.54
SCN9A-201ENST00000303354 ATG2AQ2TAZ0 1938 aa5.43□□□□□ -1.54
SCN9A-201ENST00000303354 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.43□□□□□ -1.54
SCN9A-201ENST00000303354 SPTAN1Q13813 2472 aaKnown RBP5.43□□□□□ -1.54
SCN9A-201ENST00000303354 MUC22E2RYF6 1773 aaPredicted RBP5.43□□□□□ -1.54
SCN9A-201ENST00000303354 KIAA0087Q14695 138 aa5.43□□□□□ -1.54
SCN9A-201ENST00000303354 NTM-AS1Q6ZSK4 140 aa5.42□□□□□ -1.54
SCN9A-201ENST00000303354 RPL37AP61513 92 aaKnown RBP5.42□□□□□ -1.54
SCN9A-201ENST00000303354 J3KT08 172 aa5.42□□□□□ -1.54
SCN9A-201ENST00000303354 C9orf92A6NGG3 77 aa5.42□□□□□ -1.54
SCN9A-201ENST00000303354 IGLV8-61A0A075B6I0 122 aa5.42□□□□□ -1.54
SCN9A-201ENST00000303354 WWC2-AS2Q96NR7 200 aa5.41□□□□□ -1.54
SCN9A-201ENST00000303354 KRTAP10-11P60412 298 aa5.41□□□□□ -1.54
SCN9A-201ENST00000303354 LINC00167Q96N53 147 aa5.41□□□□□ -1.54
SCN9A-201ENST00000303354 PRR14LQ5THK1 2151 aa5.41□□□□□ -1.54
SCN9A-201ENST00000303354 C2orf91Q6ZV80 131 aa5.41□□□□□ -1.54
SCN9A-201ENST00000303354 LINC00588Q9Y4M8 146 aa5.41□□□□□ -1.54
SCN9A-201ENST00000303354 FAM168BA1KXE4 195 aa5.41□□□□□ -1.54
SCN9A-201ENST00000303354 URB1-AS1Q96HZ7 61 aa5.4□□□□□ -1.54
SCN9A-201ENST00000303354 ST20-AS1Q8NBB2 130 aa5.4□□□□□ -1.54
SCN9A-201ENST00000303354 H0Y9P7 68 aa5.4□□□□□ -1.54
SCN9A-201ENST00000303354 CRYGAP11844 174 aa5.4□□□□□ -1.54
SCN9A-201ENST00000303354 SERTAD4-AS1Q5TG53 156 aa5.4□□□□□ -1.55
SCN9A-201ENST00000303354 Q96NJ1 140 aa5.4□□□□□ -1.55
SCN9A-201ENST00000303354 COX6B2Q6YFQ2 88 aa5.39□□□□□ -1.55
SCN9A-201ENST00000303354 NBDYA0A0U1RRE5 68 aa5.39□□□□□ -1.55
SCN9A-201ENST00000303354 CCDC179H3BU77 68 aa5.39□□□□□ -1.55
SCN9A-201ENST00000303354 LIMD2Q9BT23 127 aa5.38□□□□□ -1.55
SCN9A-201ENST00000303354 PSPHP1O15172 72 aa5.38□□□□□ -1.55
SCN9A-201ENST00000303354 DNAH12Q6ZR08 3092 aa5.38□□□□□ -1.55
SCN9A-201ENST00000303354 KRTAP10-3P60369 221 aa5.38□□□□□ -1.55
SCN9A-201ENST00000303354 HIVEP3Q5T1R4 2406 aa5.38□□□□□ -1.55
SCN9A-201ENST00000303354 LRP4O75096 1905 aa5.37□□□□□ -1.55
SCN9A-201ENST00000303354 C6orf48Q9UBA6 75 aa5.37□□□□□ -1.55
SCN9A-201ENST00000303354 ANAPC11Q9NYG5 84 aa5.37□□□□□ -1.55
SCN9A-201ENST00000303354 WNK1Q9H4A3 2382 aa5.37□□□□□ -1.55
SCN9A-201ENST00000303354 CDH23Q9H251 3354 aa5.37□□□□□ -1.55
SCN9A-201ENST00000303354 C5orf42Q9H799 3197 aa5.36□□□□□ -1.55
SCN9A-201ENST00000303354 CACNA1HO95180 2353 aa5.36□□□□□ -1.55
SCN9A-201ENST00000303354 K7EIL1 84 aa5.35□□□□□ -1.55
SCN9A-201ENST00000303354 TET2Q6N021 2002 aaPredicted RBP5.35□□□□□ -1.55
SCN9A-201ENST00000303354 C11orf72Q8NBR9 251 aa5.35□□□□□ -1.55
SCN9A-201ENST00000303354 UQCRQO14949 82 aa5.35□□□□□ -1.55
SCN9A-201ENST00000303354 Q8N2B8 174 aa5.35□□□□□ -1.55
SCN9A-201ENST00000303354 PTPN13Q12923 2485 aa5.34□□□□□ -1.55
SCN9A-201ENST00000303354 FAM240AA0A1B0GVK7 77 aa5.34□□□□□ -1.55
SCN9A-201ENST00000303354 SMIM29Q86T20 159 aa5.34□□□□□ -1.55
SCN9A-201ENST00000303354 MUC4Q99102 2169 aa5.34□□□□□ -1.55
SCN9A-201ENST00000303354 A0A0G2JQZ4 141 aa5.34□□□□□ -1.55
SCN9A-201ENST00000303354 A0A1W2PNN7 141 aa5.34□□□□□ -1.55
SCN9A-201ENST00000303354 EPM2AB3EWF7 344 aa5.34□□□□□ -1.56
SCN9A-201ENST00000303354 AMELXQ99217 191 aa5.33□□□□□ -1.56
SCN9A-201ENST00000303354 CSPG4Q6UVK1 2322 aa5.33□□□□□ -1.56
SCN9A-201ENST00000303354 SORL1Q92673 2214 aa5.32□□□□□ -1.56
SCN9A-201ENST00000303354 A0A1B0GUV1 79 aa5.32□□□□□ -1.56
SCN9A-201ENST00000303354 LINC00313P59037 77 aa5.32□□□□□ -1.56
SCN9A-201ENST00000303354 CPAMD8Q8IZJ3 1885 aa5.31□□□□□ -1.56
SCN9A-201ENST00000303354 hDV103S1A0JD37 113 aa5.31□□□□□ -1.56
SCN9A-201ENST00000303354 YPEL4Q96NS1 127 aa5.31□□□□□ -1.56
SCN9A-201ENST00000303354 MKI67P46013 3256 aaKnown RBP5.31□□□□□ -1.56
SCN9A-201ENST00000303354 C10orf142B7Z368 130 aa5.31□□□□□ -1.56
SCN9A-201ENST00000303354 ATRXP46100 2492 aa5.31□□□□□ -1.56
SCN9A-201ENST00000303354 BDP1A6H8Y1 2624 aa5.31□□□□□ -1.56
SCN9A-201ENST00000303354 Q6ZRP5 223 aa5.31□□□□□ -1.56
SCN9A-201ENST00000303354 Q8NAQ8 132 aa5.31□□□□□ -1.56
SCN9A-201ENST00000303354 TRBV7-7A0A0K0K1E9 115 aa5.31□□□□□ -1.56
SCN9A-201ENST00000303354 Q6JHZ5 121 aa5.3□□□□□ -1.56
SCN9A-201ENST00000303354 CDIP1Q9H305 208 aa5.3□□□□□ -1.56
SCN9A-201ENST00000303354 C1orf64Q8NEQ6 169 aa5.3□□□□□ -1.56
SCN9A-201ENST00000303354 ATP5EP2Q5VTU8 51 aa5.3□□□□□ -1.56
SCN9A-201ENST00000303354 PLXNB1O43157 2135 aa5.3□□□□□ -1.56
SCN9A-201ENST00000303354 ATP11AUNQ6ZP68 121 aa5.3□□□□□ -1.56
SCN9A-201ENST00000303354 LINC00310P59036 64 aa5.29□□□□□ -1.56
SCN9A-201ENST00000303354 COL4A2P08572 1712 aa5.29□□□□□ -1.56
SCN9A-201ENST00000303354 LAMA3Q16787 3333 aa5.29□□□□□ -1.56
SCN9A-201ENST00000303354 LINC00846Q9NV44 126 aa5.29□□□□□ -1.56
SCN9A-201ENST00000303354 TMEM254Q8TBM7 123 aa5.29□□□□□ -1.56
SCN9A-201ENST00000303354 LINC00476Q8WZB0 136 aa5.29□□□□□ -1.56
SCN9A-201ENST00000303354 A0A096LNJ9 63 aa5.28□□□□□ -1.56
SCN9A-201ENST00000303354 WDR87Q6ZQQ6 2873 aa5.28□□□□□ -1.56
SCN9A-201ENST00000303354 SPATA3Q8NHX4 192 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms