RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 LINC00308Q8TCZ7 52 aa11.68□□□□□ -0.54
CPSF4-201ENST00000292476 TM2D3Q9BRN9 247 aa11.68□□□□□ -0.54
CPSF4-201ENST00000292476 CDIP1Q9H305 208 aa11.68□□□□□ -0.54
CPSF4-201ENST00000292476 TRAV26-1A0A087WT03 109 aa11.68□□□□□ -0.54
CPSF4-201ENST00000292476 RPL13AP40429 203 aaKnown RBP11.68□□□□□ -0.54
CPSF4-201ENST00000292476 COL7A1Q02388 2944 aa11.67□□□□□ -0.54
CPSF4-201ENST00000292476 H3BT86 120 aa11.67□□□□□ -0.54
CPSF4-201ENST00000292476 TRBV6-8A0A0A6YYG3 113 aa11.66□□□□□ -0.54
CPSF4-201ENST00000292476 MRPL23Q16540 153 aaKnown RBP11.66□□□□□ -0.54
CPSF4-201ENST00000292476 H3BNG1 76 aa11.65□□□□□ -0.55
CPSF4-201ENST00000292476 LST1O00453 97 aa11.65□□□□□ -0.55
CPSF4-201ENST00000292476 A0A0J9YWU9 116 aa11.64□□□□□ -0.55
CPSF4-201ENST00000292476 HTN3P15516 51 aa11.64□□□□□ -0.55
CPSF4-201ENST00000292476 C11orf45Q8TAV5 145 aa11.64□□□□□ -0.55
CPSF4-201ENST00000292476 NPC2P61916 151 aa11.63□□□□□ -0.55
CPSF4-201ENST00000292476 NBEAL2Q6ZNJ1 2754 aa11.63□□□□□ -0.55
CPSF4-201ENST00000292476 MEIG1Q5JSS6 88 aa11.62□□□□□ -0.55
CPSF4-201ENST00000292476 NHLRC4P0CG21 123 aaPredicted RBP11.62□□□□□ -0.55
CPSF4-201ENST00000292476 DAND5Q8N907 189 aa11.62□□□□□ -0.55
CPSF4-201ENST00000292476 CHCHD5Q9BSY4 110 aa11.61□□□□□ -0.55
CPSF4-201ENST00000292476 COX7B2Q8TF08 81 aa11.6□□□□□ -0.55
CPSF4-201ENST00000292476 NTN5Q8WTR8 489 aaPredicted RBP11.6□□□□□ -0.55
CPSF4-201ENST00000292476 HUWE1Q7Z6Z7 4374 aaKnown RBP11.6□□□□□ -0.55
CPSF4-201ENST00000292476 GAGE6Q13070 117 aa11.59□□□□□ -0.55
CPSF4-201ENST00000292476 C2orf82Q6UX34 121 aa11.59□□□□□ -0.55
CPSF4-201ENST00000292476 SOSTDC1Q6X4U4 206 aa11.59□□□□□ -0.55
CPSF4-201ENST00000292476 UBE2WQ96B02 151 aa11.59□□□□□ -0.55
CPSF4-201ENST00000292476 COX7A2LO14548 114 aa11.59□□□□□ -0.55
CPSF4-201ENST00000292476 Q6ZTC4 211 aa11.59□□□□□ -0.55
CPSF4-201ENST00000292476 A0A087WZ39 114 aa11.57□□□□□ -0.56
CPSF4-201ENST00000292476 IGHV3OR16-9A0A0B4J2B5 98 aa11.57□□□□□ -0.56
CPSF4-201ENST00000292476 A0A1B0GUV1 79 aa11.56□□□□□ -0.56
CPSF4-201ENST00000292476 XGP55808 180 aa11.56□□□□□ -0.56
CPSF4-201ENST00000292476 CLEC2BQ92478 149 aa11.56□□□□□ -0.56
CPSF4-201ENST00000292476 IGLV4-60A0A075B6I1 120 aa11.55□□□□□ -0.56
CPSF4-201ENST00000292476 DEFB131BA0A096LNP1 70 aa11.55□□□□□ -0.56
CPSF4-201ENST00000292476 TRAV13-2A0A0B4J235 113 aa11.55□□□□□ -0.56
CPSF4-201ENST00000292476 LINC01561Q8N1V8 128 aa11.55□□□□□ -0.56
CPSF4-201ENST00000292476 A0A096LPF7 62 aa11.55□□□□□ -0.56
CPSF4-201ENST00000292476 TRAV10A0A0B4J240 114 aa11.55□□□□□ -0.56
CPSF4-201ENST00000292476 A0A1B0GV72 72 aa11.55□□□□□ -0.56
CPSF4-201ENST00000292476 NANOS2P60321 138 aaKnown RBP11.55□□□□□ -0.56
CPSF4-201ENST00000292476 LELP1Q5T871 98 aa11.55□□□□□ -0.56
CPSF4-201ENST00000292476 IBA57-AS1B1ANH7 110 aa11.54□□□□□ -0.56
CPSF4-201ENST00000292476 MT-ATP8P03928 68 aa11.54□□□□□ -0.56
CPSF4-201ENST00000292476 TENM3Q9P273 2699 aa11.54□□□□□ -0.56
CPSF4-201ENST00000292476 FAM240AA0A1B0GVK7 77 aa11.53□□□□□ -0.56
CPSF4-201ENST00000292476 TRACP01848 142 aa11.53□□□□□ -0.56
CPSF4-201ENST00000292476 TRAV8-4A0A0B4J246 113 aa11.52□□□□□ -0.56
CPSF4-201ENST00000292476 A0A0U1RRA0 63 aa11.52□□□□□ -0.57
CPSF4-201ENST00000292476 TEX49A0A1B0GTD5 131 aa11.52□□□□□ -0.57
CPSF4-201ENST00000292476 LINC00959A0A1B0GUT2 108 aa11.52□□□□□ -0.57
CPSF4-201ENST00000292476 WWC2-AS2Q96NR7 200 aa11.51□□□□□ -0.57
CPSF4-201ENST00000292476 CRPP02741 224 aa11.5□□□□□ -0.57
CPSF4-201ENST00000292476 RPL28P46779 137 aaKnown RBP11.5□□□□□ -0.57
CPSF4-201ENST00000292476 MIR7-3HGQ8N6C7 128 aa11.5□□□□□ -0.57
CPSF4-201ENST00000292476 C15orf53Q8NAA6 179 aa11.5□□□□□ -0.57
CPSF4-201ENST00000292476 STAB2Q8WWQ8 2551 aa11.5□□□□□ -0.57
CPSF4-201ENST00000292476 SS18Q15532 418 aa11.49□□□□□ -0.57
CPSF4-201ENST00000292476 LYPD5Q6UWN5 251 aa11.49□□□□□ -0.57
CPSF4-201ENST00000292476 TOMM7Q9P0U1 55 aa11.49□□□□□ -0.57
CPSF4-201ENST00000292476 SND1-IT1Q9HBX3 110 aa11.48□□□□□ -0.57
CPSF4-201ENST00000292476 Q8IZM0 81 aa11.47□□□□□ -0.57
CPSF4-201ENST00000292476 IGKV3OR2-268A0A0C4DH90 116 aa11.46□□□□□ -0.57
CPSF4-201ENST00000292476 LINC00158P58513 81 aa11.46□□□□□ -0.57
CPSF4-201ENST00000292476 CKS1BP61024 79 aa11.46□□□□□ -0.58
CPSF4-201ENST00000292476 Q6Q795 121 aa11.46□□□□□ -0.58
CPSF4-201ENST00000292476 SNCGO76070 127 aa11.45□□□□□ -0.58
CPSF4-201ENST00000292476 IGKV2-28A0A075B6P5 120 aa11.44□□□□□ -0.58
CPSF4-201ENST00000292476 IGKV2D-28P01615 120 aa11.44□□□□□ -0.58
CPSF4-201ENST00000292476 ACYP1P07311 99 aa11.44□□□□□ -0.58
CPSF4-201ENST00000292476 CCL18P55774 89 aa11.44□□□□□ -0.58
CPSF4-201ENST00000292476 C5orf38Q86SI9 138 aa11.44□□□□□ -0.58
CPSF4-201ENST00000292476 LINC00337Q8N6G1 96 aa11.43□□□□□ -0.58
CPSF4-201ENST00000292476 ANGP03950 147 aaKnown RBP11.43□□□□□ -0.58
CPSF4-201ENST00000292476 C6orf226Q5I0X4 101 aa11.43□□□□□ -0.58
CPSF4-201ENST00000292476 H0YGX0 51 aa11.42□□□□□ -0.58
CPSF4-201ENST00000292476 CXCL5P42830 114 aa11.42□□□□□ -0.58
CPSF4-201ENST00000292476 CD164L2Q6UWJ8 174 aa11.4□□□□□ -0.58
CPSF4-201ENST00000292476 XCL1P47992 114 aa11.4□□□□□ -0.59
CPSF4-201ENST00000292476 REG3AQ06141 175 aa11.4□□□□□ -0.59
CPSF4-201ENST00000292476 GAGE2BQ13066 116 aa11.4□□□□□ -0.59
CPSF4-201ENST00000292476 GAGE2EQ4V326 116 aa11.4□□□□□ -0.59
CPSF4-201ENST00000292476 LINC00269Q8N2A0 174 aa11.4□□□□□ -0.59
CPSF4-201ENST00000292476 MUC7Q8TAX7 377 aa11.4□□□□□ -0.59
CPSF4-201ENST00000292476 GAGE2DQ9UEU5 116 aa11.4□□□□□ -0.59
CPSF4-201ENST00000292476 BAALC-AS2P0C853 105 aa11.39□□□□□ -0.59
CPSF4-201ENST00000292476 COX17Q14061 63 aa11.39□□□□□ -0.59
CPSF4-201ENST00000292476 ESRGQ1W209 222 aa11.39□□□□□ -0.59
CPSF4-201ENST00000292476 DNAH7Q8WXX0 4024 aa11.38□□□□□ -0.59
CPSF4-201ENST00000292476 SMIM11BQ8TCY0 68 aa11.38□□□□□ -0.59
CPSF4-201ENST00000292476 FAM218AQ96MZ4 157 aa11.38□□□□□ -0.59
CPSF4-201ENST00000292476 INAFM2P0DMQ5 153 aa11.37□□□□□ -0.59
CPSF4-201ENST00000292476 PFN2P35080 140 aa11.36□□□□□ -0.59
CPSF4-201ENST00000292476 PRR34Q9NV39 138 aa11.36□□□□□ -0.59
CPSF4-201ENST00000292476 NDUFC2O95298 119 aa11.35□□□□□ -0.59
CPSF4-201ENST00000292476 C3orf84H3BNL1 204 aa11.34□□□□□ -0.59
CPSF4-201ENST00000292476 DNAL4O96015 105 aa11.34□□□□□ -0.59
CPSF4-201ENST00000292476 MALP21145 153 aa11.34□□□□□ -0.59
CPSF4-201ENST00000292476 KIAA0087Q14695 138 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 142.8 ms