RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 LELP1Q5T871 98 aa10.56□□□□□ -0.72
SF3B4-201ENST00000271628 Q9H8V8 135 aa10.56□□□□□ -0.72
SF3B4-201ENST00000271628 NTN5Q8WTR8 489 aaPredicted RBP10.56□□□□□ -0.72
SF3B4-201ENST00000271628 H3BT86 120 aa10.55□□□□□ -0.72
SF3B4-201ENST00000271628 A0A087WZ39 114 aa10.54□□□□□ -0.72
SF3B4-201ENST00000271628 HERV-K104P63124 156 aa10.54□□□□□ -0.72
SF3B4-201ENST00000271628 LINC00308Q8TCZ7 52 aa10.54□□□□□ -0.72
SF3B4-201ENST00000271628 LST1O00453 97 aa10.54□□□□□ -0.72
SF3B4-201ENST00000271628 CKS1BP61024 79 aa10.54□□□□□ -0.72
SF3B4-201ENST00000271628 C2orf82Q6UX34 121 aa10.53□□□□□ -0.72
SF3B4-201ENST00000271628 DAND5Q8N907 189 aa10.53□□□□□ -0.72
SF3B4-201ENST00000271628 PPDPFQ9H3Y8 114 aa10.53□□□□□ -0.72
SF3B4-201ENST00000271628 A0A0J9YWU9 116 aa10.53□□□□□ -0.72
SF3B4-201ENST00000271628 Q6ZTC4 211 aa10.53□□□□□ -0.72
SF3B4-201ENST00000271628 C11orf45Q8TAV5 145 aa10.52□□□□□ -0.73
SF3B4-201ENST00000271628 UBE2WQ96B02 151 aa10.52□□□□□ -0.73
SF3B4-201ENST00000271628 ZNF625Q96I27 306 aaPredicted RBP10.52□□□□□ -0.73
SF3B4-201ENST00000271628 ANGP03950 147 aaKnown RBP10.51□□□□□ -0.73
SF3B4-201ENST00000271628 LYPD5Q6UWN5 251 aa10.51□□□□□ -0.73
SF3B4-201ENST00000271628 LINC00269Q8N2A0 174 aa10.51□□□□□ -0.73
SF3B4-201ENST00000271628 COX7B2Q8TF08 81 aa10.51□□□□□ -0.73
SF3B4-201ENST00000271628 TEX49A0A1B0GTD5 131 aa10.51□□□□□ -0.73
SF3B4-201ENST00000271628 KPRPQ5T749 579 aaPredicted RBP10.51□□□□□ -0.73
SF3B4-201ENST00000271628 LINC01561Q8N1V8 128 aa10.51□□□□□ -0.73
SF3B4-201ENST00000271628 XCL1P47992 114 aa10.49□□□□□ -0.73
SF3B4-201ENST00000271628 REG3AQ06141 175 aa10.49□□□□□ -0.73
SF3B4-201ENST00000271628 MEIG1Q5JSS6 88 aa10.49□□□□□ -0.73
SF3B4-201ENST00000271628 C5orf38Q86SI9 138 aa10.49□□□□□ -0.73
SF3B4-201ENST00000271628 CLEC2BQ92478 149 aa10.49□□□□□ -0.73
SF3B4-201ENST00000271628 K7EIL1 84 aa10.49□□□□□ -0.73
SF3B4-201ENST00000271628 DEFB121Q5J5C9 76 aa10.49□□□□□ -0.73
SF3B4-201ENST00000271628 TM2D3Q9BRN9 247 aa10.49□□□□□ -0.73
SF3B4-201ENST00000271628 TOMM7Q9P0U1 55 aa10.48□□□□□ -0.73
SF3B4-201ENST00000271628 TRAV8-4A0A0B4J246 113 aa10.48□□□□□ -0.73
SF3B4-201ENST00000271628 PRB2P02812 416 aaPredicted RBP10.48□□□□□ -0.73
SF3B4-201ENST00000271628 CLPSL2Q6UWE3 100 aa10.48□□□□□ -0.73
SF3B4-201ENST00000271628 CD164L2Q6UWJ8 174 aa10.48□□□□□ -0.73
SF3B4-201ENST00000271628 DEFB131BA0A096LNP1 70 aa10.47□□□□□ -0.73
SF3B4-201ENST00000271628 NANOS2P60321 138 aaKnown RBP10.47□□□□□ -0.73
SF3B4-201ENST00000271628 NOTCH1P46531 2555 aa10.47□□□□□ -0.73
SF3B4-201ENST00000271628 COX7A2LO14548 114 aa10.46□□□□□ -0.73
SF3B4-201ENST00000271628 SOSTDC1Q6X4U4 206 aa10.46□□□□□ -0.73
SF3B4-201ENST00000271628 NBEAL1Q6ZS30 2694 aa10.46□□□□□ -0.74
SF3B4-201ENST00000271628 A0A0U1RRA0 63 aa10.46□□□□□ -0.74
SF3B4-201ENST00000271628 SNCGO76070 127 aa10.46□□□□□ -0.74
SF3B4-201ENST00000271628 MDFIQ99750 246 aa10.46□□□□□ -0.74
SF3B4-201ENST00000271628 C6orf226Q5I0X4 101 aa10.45□□□□□ -0.74
SF3B4-201ENST00000271628 CHCHD10Q8WYQ3 142 aaPredicted RBP10.45□□□□□ -0.74
SF3B4-201ENST00000271628 PRR34Q9NV39 138 aa10.45□□□□□ -0.74
SF3B4-201ENST00000271628 FAM240AA0A1B0GVK7 77 aa10.44□□□□□ -0.74
SF3B4-201ENST00000271628 Q8IZM0 81 aa10.44□□□□□ -0.74
SF3B4-201ENST00000271628 Q8N3U1 123 aa10.44□□□□□ -0.74
SF3B4-201ENST00000271628 MRAPQ8TCY5 172 aa10.43□□□□□ -0.74
SF3B4-201ENST00000271628 GAGE2BQ13066 116 aa10.42□□□□□ -0.74
SF3B4-201ENST00000271628 GAGE2EQ4V326 116 aa10.42□□□□□ -0.74
SF3B4-201ENST00000271628 Q6Q795 121 aa10.42□□□□□ -0.74
SF3B4-201ENST00000271628 GAGE2DQ9UEU5 116 aa10.42□□□□□ -0.74
SF3B4-201ENST00000271628 KLK12Q9UKR0 248 aa10.42□□□□□ -0.74
SF3B4-201ENST00000271628 TENM3Q9P273 2699 aa10.42□□□□□ -0.74
SF3B4-201ENST00000271628 IGLV10-54A0A075B6I4 117 aa10.42□□□□□ -0.74
SF3B4-201ENST00000271628 TRAV13-2A0A0B4J235 113 aa10.42□□□□□ -0.74
SF3B4-201ENST00000271628 TRAV10A0A0B4J240 114 aa10.42□□□□□ -0.74
SF3B4-201ENST00000271628 IBA57-AS1B1ANH7 110 aa10.42□□□□□ -0.74
SF3B4-201ENST00000271628 TRACP01848 142 aa10.41□□□□□ -0.74
SF3B4-201ENST00000271628 MALP21145 153 aa10.41□□□□□ -0.74
SF3B4-201ENST00000271628 CRPP02741 224 aa10.4□□□□□ -0.75
SF3B4-201ENST00000271628 ESRGQ1W209 222 aa10.4□□□□□ -0.75
SF3B4-201ENST00000271628 CXCL5P42830 114 aa10.39□□□□□ -0.75
SF3B4-201ENST00000271628 ENHOQ6UWT2 76 aa10.39□□□□□ -0.75
SF3B4-201ENST00000271628 WFDC10BQ8IUB3 73 aa10.39□□□□□ -0.75
SF3B4-201ENST00000271628 C15orf53Q8NAA6 179 aa10.39□□□□□ -0.75
SF3B4-201ENST00000271628 ANAPC13Q9BS18 74 aa10.38□□□□□ -0.75
SF3B4-201ENST00000271628 RPL28P46779 137 aaKnown RBP10.38□□□□□ -0.75
SF3B4-201ENST00000271628 LINC00158P58513 81 aa10.38□□□□□ -0.75
SF3B4-201ENST00000271628 CFAP161Q6P656 301 aa10.38□□□□□ -0.75
SF3B4-201ENST00000271628 ACYP1P07311 99 aa10.37□□□□□ -0.75
SF3B4-201ENST00000271628 MIR7-3HGQ8N6C7 128 aa10.37□□□□□ -0.75
SF3B4-201ENST00000271628 KIAA0087Q14695 138 aa10.36□□□□□ -0.75
SF3B4-201ENST00000271628 SND1-IT1Q9HBX3 110 aa10.36□□□□□ -0.75
SF3B4-201ENST00000271628 KLK5Q9Y337 293 aaPredicted RBP10.36□□□□□ -0.75
SF3B4-201ENST00000271628 MGAM2Q2M2H8 2515 aa10.36□□□□□ -0.75
SF3B4-201ENST00000271628 HUWE1Q7Z6Z7 4374 aaKnown RBP10.35□□□□□ -0.75
SF3B4-201ENST00000271628 PFN2P35080 140 aa10.34□□□□□ -0.75
SF3B4-201ENST00000271628 COX17Q14061 63 aa10.34□□□□□ -0.75
SF3B4-201ENST00000271628 TTC32Q5I0X7 151 aa10.34□□□□□ -0.75
SF3B4-201ENST00000271628 LINC01556Q5JQF7 62 aa10.34□□□□□ -0.75
SF3B4-201ENST00000271628 BAALC-AS2P0C853 105 aa10.34□□□□□ -0.75
SF3B4-201ENST00000271628 NDUFV3P56181 108 aaKnown RBP10.34□□□□□ -0.75
SF3B4-201ENST00000271628 IGKV2-28A0A075B6P5 120 aa10.33□□□□□ -0.76
SF3B4-201ENST00000271628 IGKV2D-28P01615 120 aa10.33□□□□□ -0.76
SF3B4-201ENST00000271628 LINC00337Q8N6G1 96 aa10.32□□□□□ -0.76
SF3B4-201ENST00000271628 CCL18P55774 89 aa10.31□□□□□ -0.76
SF3B4-201ENST00000271628 FAM218AQ96MZ4 157 aa10.31□□□□□ -0.76
SF3B4-201ENST00000271628 H0YGX0 51 aa10.3□□□□□ -0.76
SF3B4-201ENST00000271628 SPAG11BQ08648 103 aa10.3□□□□□ -0.76
SF3B4-201ENST00000271628 NHLRC4P0CG21 123 aaPredicted RBP10.3□□□□□ -0.76
SF3B4-201ENST00000271628 DNAH10OSP0CZ25 163 aa10.29□□□□□ -0.76
SF3B4-201ENST00000271628 B9D2Q9BPU9 175 aa10.29□□□□□ -0.76
SF3B4-201ENST00000271628 TRBV7-7A0A0K0K1E9 115 aa10.29□□□□□ -0.76
SF3B4-201ENST00000271628 INAFM2P0DMQ5 153 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 173.5 ms