RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 DEFB121Q5J5C9 76 aa7.09□□□□□ -1.27
LIG3-201ENST00000262327 TMEM243Q9BU79 118 aa7.09□□□□□ -1.27
LIG3-201ENST00000262327 ATP5G1P05496 136 aa7.09□□□□□ -1.27
LIG3-201ENST00000262327 BAALC-AS2P0C853 105 aa7.09□□□□□ -1.27
LIG3-201ENST00000262327 PFN2P35080 140 aa7.09□□□□□ -1.27
LIG3-201ENST00000262327 C5orf38Q86SI9 138 aa7.09□□□□□ -1.27
LIG3-201ENST00000262327 NOTCH2Q04721 2471 aa7.09□□□□□ -1.27
LIG3-201ENST00000262327 TRGV4A0A0C4DH28 118 aa7.09□□□□□ -1.28
LIG3-201ENST00000262327 LINC00158P58513 81 aa7.08□□□□□ -1.28
LIG3-201ENST00000262327 TMEM258P61165 79 aa7.08□□□□□ -1.28
LIG3-201ENST00000262327 IL17DQ8TAD2 202 aa7.08□□□□□ -1.28
LIG3-201ENST00000262327 PKIGQ9Y2B9 76 aa7.08□□□□□ -1.28
LIG3-201ENST00000262327 LINC00337Q8N6G1 96 aa7.08□□□□□ -1.28
LIG3-201ENST00000262327 A0A096LPF7 62 aa7.07□□□□□ -1.28
LIG3-201ENST00000262327 MALP21145 153 aa7.07□□□□□ -1.28
LIG3-201ENST00000262327 CLPSL2Q6UWE3 100 aa7.07□□□□□ -1.28
LIG3-201ENST00000262327 LINC00643Q86TS7 51 aa7.07□□□□□ -1.28
LIG3-201ENST00000262327 DEFB130BP0DP73 79 aa7.07□□□□□ -1.28
LIG3-201ENST00000262327 DEFB130AP0DP74 79 aa7.07□□□□□ -1.28
LIG3-201ENST00000262327 PRO0628Q9UI54 55 aa7.07□□□□□ -1.28
LIG3-201ENST00000262327 TRBV10-1A0A0K0K1A3 114 aa7.07□□□□□ -1.28
LIG3-201ENST00000262327 PLAC8L1A1L4L8 177 aa7.07□□□□□ -1.28
LIG3-201ENST00000262327 SEC61GP60059 68 aa7.06□□□□□ -1.28
LIG3-201ENST00000262327 COX7B2Q8TF08 81 aa7.06□□□□□ -1.28
LIG3-201ENST00000262327 SND1-IT1Q9HBX3 110 aa7.06□□□□□ -1.28
LIG3-201ENST00000262327 C9orf129Q5T035 196 aaKnown RBP7.06□□□□□ -1.28
LIG3-201ENST00000262327 LINC00336Q6ZUF6 198 aa7.06□□□□□ -1.28
LIG3-201ENST00000262327 C22orf24Q9Y442 160 aa7.06□□□□□ -1.28
LIG3-201ENST00000262327 IGKV2-28A0A075B6P5 120 aa7.05□□□□□ -1.28
LIG3-201ENST00000262327 IGKV2D-28P01615 120 aa7.05□□□□□ -1.28
LIG3-201ENST00000262327 CRPP02741 224 aa7.05□□□□□ -1.28
LIG3-201ENST00000262327 VWFP04275 2813 aa7.05□□□□□ -1.28
LIG3-201ENST00000262327 A0A087WYN8 130 aa7.05□□□□□ -1.28
LIG3-201ENST00000262327 ACYP1P07311 99 aa7.05□□□□□ -1.28
LIG3-201ENST00000262327 ATOX1O00244 68 aa7.04□□□□□ -1.28
LIG3-201ENST00000262327 SLPIP03973 132 aa7.04□□□□□ -1.28
LIG3-201ENST00000262327 SMIM11BQ8TCY0 68 aa7.04□□□□□ -1.28
LIG3-201ENST00000262327 XCL1P47992 114 aa7.03□□□□□ -1.28
LIG3-201ENST00000262327 CCL18P55774 89 aa7.03□□□□□ -1.28
LIG3-201ENST00000262327 PAX4O43316 350 aa7.03□□□□□ -1.28
LIG3-201ENST00000262327 CXCL5P42830 114 aa7.03□□□□□ -1.28
LIG3-201ENST00000262327 FAM19A3Q7Z5A8 133 aa7.03□□□□□ -1.28
LIG3-201ENST00000262327 TRBV6-8A0A0A6YYG3 113 aa7.02□□□□□ -1.29
LIG3-201ENST00000262327 CYSRT1A8MQ03 144 aa7.02□□□□□ -1.29
LIG3-201ENST00000262327 HIST1H4AP62805 103 aaKnown RBP7.02□□□□□ -1.29
LIG3-201ENST00000262327 FHL2Q14192 279 aa7.02□□□□□ -1.29
LIG3-201ENST00000262327 C16orf74Q96GX8 76 aa7.02□□□□□ -1.29
LIG3-201ENST00000262327 UPK3BQ9BT76 320 aa7.02□□□□□ -1.29
LIG3-201ENST00000262327 HIVEP1P15822 2718 aa7.02□□□□□ -1.29
LIG3-201ENST00000262327 PRR3P79522 188 aaKnown RBP7.02□□□□□ -1.29
LIG3-201ENST00000262327 COPS9Q8WXC6 57 aa7.02□□□□□ -1.29
LIG3-201ENST00000262327 C14orf132Q9NPU4 83 aa7.02□□□□□ -1.29
LIG3-201ENST00000262327 KRTAP10-3P60369 221 aa7.01□□□□□ -1.29
LIG3-201ENST00000262327 TRAV13-2A0A0B4J235 113 aa7.01□□□□□ -1.29
LIG3-201ENST00000262327 IGHV3OR16-9A0A0B4J2B5 98 aa7.01□□□□□ -1.29
LIG3-201ENST00000262327 C19orf73Q9NVV2 129 aa7.01□□□□□ -1.29
LIG3-201ENST00000262327 LECT2O14960 151 aa7□□□□□ -1.29
LIG3-201ENST00000262327 DEFB4AO15263 64 aa7□□□□□ -1.29
LIG3-201ENST00000262327 DNAL4O96015 105 aa7□□□□□ -1.29
LIG3-201ENST00000262327 C6orf226Q5I0X4 101 aa7□□□□□ -1.29
LIG3-201ENST00000262327 TRBV6-4A0A1B0GX49 114 aa7□□□□□ -1.29
LIG3-201ENST00000262327 Q8N3U1 123 aa7□□□□□ -1.29
LIG3-201ENST00000262327 CSNK1G2-AS1Q8NCQ2 148 aa7□□□□□ -1.29
LIG3-201ENST00000262327 RPL28P46779 137 aaKnown RBP6.99□□□□□ -1.29
LIG3-201ENST00000262327 RPL18AQ02543 176 aaKnown RBP6.99□□□□□ -1.29
LIG3-201ENST00000262327 SERP2Q8N6R1 65 aa6.99□□□□□ -1.29
LIG3-201ENST00000262327 BAHCC1Q9P281 2608 aa6.99□□□□□ -1.29
LIG3-201ENST00000262327 NCR3O14931 201 aa6.99□□□□□ -1.29
LIG3-201ENST00000262327 GYPEP15421 78 aa6.99□□□□□ -1.29
LIG3-201ENST00000262327 SDIM1Q6ZPB5 146 aa6.99□□□□□ -1.29
LIG3-201ENST00000262327 IGLV10-54A0A075B6I4 117 aa6.99□□□□□ -1.29
LIG3-201ENST00000262327 NSD1Q96L73 2696 aaPredicted RBP6.98□□□□□ -1.29
LIG3-201ENST00000262327 LINC00959A0A1B0GUT2 108 aa6.98□□□□□ -1.29
LIG3-201ENST00000262327 FLNBO75369 2602 aaKnown RBP6.98□□□□□ -1.29
LIG3-201ENST00000262327 IGKV3D-7A0A0C4DH55 119 aa6.98□□□□□ -1.29
LIG3-201ENST00000262327 FAM236DA0A1B0GTK5 79 aa6.98□□□□□ -1.29
LIG3-201ENST00000262327 IGLV1-51P01701 117 aa6.98□□□□□ -1.29
LIG3-201ENST00000262327 FAM236CP0DP71 79 aa6.98□□□□□ -1.29
LIG3-201ENST00000262327 V9GYY9 64 aa6.98□□□□□ -1.29
LIG3-201ENST00000262327 A0A087WZ39 114 aa6.97□□□□□ -1.29
LIG3-201ENST00000262327 C9orf116Q5BN46 136 aaPredicted RBP6.96□□□□□ -1.29
LIG3-201ENST00000262327 OVOL2Q9BRP0 275 aa6.96□□□□□ -1.29
LIG3-201ENST00000262327 PF4P02776 101 aa6.96□□□□□ -1.3
LIG3-201ENST00000262327 LINC00482Q8N8I6 264 aa6.96□□□□□ -1.3
LIG3-201ENST00000262327 F8P00451 2351 aa6.95□□□□□ -1.3
LIG3-201ENST00000262327 A0A087WVE0 104 aa6.95□□□□□ -1.3
LIG3-201ENST00000262327 CMC4P56277 68 aaPredicted RBP6.95□□□□□ -1.3
LIG3-201ENST00000262327 SPATA3Q8NHX4 192 aa6.95□□□□□ -1.3
LIG3-201ENST00000262327 IBA57-AS1B1ANH7 110 aa6.95□□□□□ -1.3
LIG3-201ENST00000262327 A0A0U1RQV1 116 aa6.95□□□□□ -1.3
LIG3-201ENST00000262327 INAFM2P0DMQ5 153 aa6.95□□□□□ -1.3
LIG3-201ENST00000262327 FAM222AQ5U5X8 452 aa6.95□□□□□ -1.3
LIG3-201ENST00000262327 TRRAPQ9Y4A5 3859 aa6.94□□□□□ -1.3
LIG3-201ENST00000262327 LINC00269Q8N2A0 174 aa6.94□□□□□ -1.3
LIG3-201ENST00000262327 LINC00846Q9NV44 126 aa6.94□□□□□ -1.3
LIG3-201ENST00000262327 TENM1Q9UKZ4 2725 aa6.94□□□□□ -1.3
LIG3-201ENST00000262327 C1orf195Q5TG92 126 aa6.93□□□□□ -1.3
LIG3-201ENST00000262327 USP17L23D6RBM5 183 aa6.92□□□□□ -1.3
LIG3-201ENST00000262327 SS18Q15532 418 aa6.92□□□□□ -1.3
LIG3-201ENST00000262327 KRTAP24-1Q3LI83 254 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms