RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 PRM2P04554 102 aa9.04□□□□□ -0.96
MSH2-201ENST00000233146 SCXQ7RTU7 201 aa9.03□□□□□ -0.96
MSH2-201ENST00000233146 SVEP1Q4LDE5 3571 aa9.03□□□□□ -0.96
MSH2-201ENST00000233146 PKD1L2Q7Z442 2459 aa9.03□□□□□ -0.96
MSH2-201ENST00000233146 RBM12B-AS1Q9P1G2 102 aa9.03□□□□□ -0.96
MSH2-201ENST00000233146 PDE6GP18545 87 aa9.03□□□□□ -0.96
MSH2-201ENST00000233146 LRCOL1A6NCL2 159 aa9.02□□□□□ -0.97
MSH2-201ENST00000233146 ZFP36P26651 326 aaKnown RBP9.02□□□□□ -0.97
MSH2-201ENST00000233146 C11orf44Q8N8P7 122 aa9.02□□□□□ -0.97
MSH2-201ENST00000233146 PSPHP1O15172 72 aa9.01□□□□□ -0.97
MSH2-201ENST00000233146 CD164L2Q6UWJ8 174 aa9.01□□□□□ -0.97
MSH2-201ENST00000233146 HIGD2AQ9BW72 106 aa9.01□□□□□ -0.97
MSH2-201ENST00000233146 TRAV22A0A0B4J277 110 aa9□□□□□ -0.97
MSH2-201ENST00000233146 LRBAP50851 2863 aa9□□□□□ -0.97
MSH2-201ENST00000233146 LINC00575Q6W349 94 aa9□□□□□ -0.97
MSH2-201ENST00000233146 H3BUA1 57 aa9□□□□□ -0.97
MSH2-201ENST00000233146 C4orf48Q5BLP8 95 aa9□□□□□ -0.97
MSH2-201ENST00000233146 KTN1-AS1Q86SY8 53 aa9□□□□□ -0.97
MSH2-201ENST00000233146 C1orf64Q8NEQ6 169 aa8.99□□□□□ -0.97
MSH2-201ENST00000233146 PTPN13Q12923 2485 aa8.99□□□□□ -0.97
MSH2-201ENST00000233146 SORL1Q92673 2214 aa8.99□□□□□ -0.97
MSH2-201ENST00000233146 ASH1LQ9NR48 2969 aaKnown RBP8.99□□□□□ -0.97
MSH2-201ENST00000233146 FASNP49327 2511 aaKnown RBP8.99□□□□□ -0.97
MSH2-201ENST00000233146 IGHV4-38-2P0DP08 117 aa8.98□□□□□ -0.97
MSH2-201ENST00000233146 PRR3P79522 188 aaKnown RBP8.98□□□□□ -0.97
MSH2-201ENST00000233146 SPATA3Q8NHX4 192 aa8.98□□□□□ -0.97
MSH2-201ENST00000233146 MUC7Q8TAX7 377 aa8.98□□□□□ -0.97
MSH2-201ENST00000233146 IGHV3OR16-9A0A0B4J2B5 98 aa8.97□□□□□ -0.97
MSH2-201ENST00000233146 DEFB109BQ30KR1 87 aa8.97□□□□□ -0.97
MSH2-201ENST00000233146 LINC01356Q8N9X3 169 aa8.97□□□□□ -0.97
MSH2-201ENST00000233146 LINC00588Q9Y4M8 146 aa8.97□□□□□ -0.97
MSH2-201ENST00000233146 ADORA2A-AS1P86434 159 aa8.97□□□□□ -0.97
MSH2-201ENST00000233146 C6orf99Q4VX62 202 aa8.97□□□□□ -0.97
MSH2-201ENST00000233146 A8MU10 97 aa8.96□□□□□ -0.98
MSH2-201ENST00000233146 PRB1P04280 392 aa8.96□□□□□ -0.98
MSH2-201ENST00000233146 LMO4P61968 165 aa8.96□□□□□ -0.98
MSH2-201ENST00000233146 SYCNQ0VAF6 134 aa8.96□□□□□ -0.98
MSH2-201ENST00000233146 LRRK2Q5S007 2527 aa8.96□□□□□ -0.98
MSH2-201ENST00000233146 C19orf84I3L1E1 186 aa8.95□□□□□ -0.98
MSH2-201ENST00000233146 POLQO75417 2590 aa8.95□□□□□ -0.98
MSH2-201ENST00000233146 IGKV4-1P06312 121 aa8.95□□□□□ -0.98
MSH2-201ENST00000233146 IGHV4-31P0DP07 118 aa8.95□□□□□ -0.98
MSH2-201ENST00000233146 IGFL3Q6UXB1 125 aa8.95□□□□□ -0.98
MSH2-201ENST00000233146 STHQ8IWL8 128 aa8.94□□□□□ -0.98
MSH2-201ENST00000233146 CRYBG3Q68DQ2 2970 aa8.94□□□□□ -0.98
MSH2-201ENST00000233146 UBE2L6O14933 153 aa8.93□□□□□ -0.98
MSH2-201ENST00000233146 UTP20O75691 2785 aaKnown RBP8.93□□□□□ -0.98
MSH2-201ENST00000233146 PLA2G2CQ5R387 149 aa8.93□□□□□ -0.98
MSH2-201ENST00000233146 UBE2BP63146 152 aa8.93□□□□□ -0.98
MSH2-201ENST00000233146 LYRM9A8MSI8 78 aa8.92□□□□□ -0.98
MSH2-201ENST00000233146 M0R378 163 aa8.92□□□□□ -0.98
MSH2-201ENST00000233146 A8MTW9 85 aa8.92□□□□□ -0.98
MSH2-201ENST00000233146 IGLV1-40P01703 118 aa8.92□□□□□ -0.98
MSH2-201ENST00000233146 Q8N9L7 120 aa8.92□□□□□ -0.98
MSH2-201ENST00000233146 A8MUN3 132 aa8.91□□□□□ -0.98
MSH2-201ENST00000233146 LINC01006Q8NI28 216 aa8.91□□□□□ -0.98
MSH2-201ENST00000233146 LCE6AA0A183 80 aa8.91□□□□□ -0.98
MSH2-201ENST00000233146 H3BQ85 93 aa8.91□□□□□ -0.98
MSH2-201ENST00000233146 FLNCQ14315 2725 aa8.91□□□□□ -0.98
MSH2-201ENST00000233146 IGKV3OR2-268A0A0C4DH90 116 aa8.9□□□□□ -0.98
MSH2-201ENST00000233146 CCDC168Q8NDH2 2452 aa8.9□□□□□ -0.99
MSH2-201ENST00000233146 PSCAO43653 123 aa8.89□□□□□ -0.99
MSH2-201ENST00000233146 ZNF462Q96JM2 2506 aa8.89□□□□□ -0.99
MSH2-201ENST00000233146 Q5VV11 94 aa8.89□□□□□ -0.99
MSH2-201ENST00000233146 Q6ZQY7 126 aa8.88□□□□□ -0.99
MSH2-201ENST00000233146 C11orf45Q8TAV5 145 aa8.88□□□□□ -0.99
MSH2-201ENST00000233146 CYP4F30PQ9H0H9 118 aa8.87□□□□□ -0.99
MSH2-201ENST00000233146 TLN2Q9Y4G6 2542 aa8.87□□□□□ -0.99
MSH2-201ENST00000233146 ZCCHC13Q8WW36 166 aaKnown RBP8.87□□□□□ -0.99
MSH2-201ENST00000233146 ITPR1Q14643 2758 aa8.87□□□□□ -0.99
MSH2-201ENST00000233146 ABCA12Q86UK0 2595 aa8.87□□□□□ -0.99
MSH2-201ENST00000233146 IGLV4-60A0A075B6I1 120 aa8.87□□□□□ -0.99
MSH2-201ENST00000233146 UBE2E2Q96LR5 201 aa8.87□□□□□ -0.99
MSH2-201ENST00000233146 CFAP46Q8IYW2 2715 aa8.86□□□□□ -0.99
MSH2-201ENST00000233146 C16orf90A8MZG2 172 aa8.86□□□□□ -0.99
MSH2-201ENST00000233146 HIVEP3Q5T1R4 2406 aa8.86□□□□□ -0.99
MSH2-201ENST00000233146 NDUFS5O43920 106 aa8.86□□□□□ -0.99
MSH2-201ENST00000233146 LINC00612Q8N6U2 182 aa8.86□□□□□ -0.99
MSH2-201ENST00000233146 PLA2G2AP14555 144 aa8.85□□□□□ -0.99
MSH2-201ENST00000233146 LINC00269Q8N2A0 174 aa8.85□□□□□ -0.99
MSH2-201ENST00000233146 Q8NDZ9 215 aa8.85□□□□□ -0.99
MSH2-201ENST00000233146 CHD6Q8TD26 2715 aa8.85□□□□□ -0.99
MSH2-201ENST00000233146 TRBV6-8A0A0A6YYG3 113 aa8.85□□□□□ -0.99
MSH2-201ENST00000233146 APOC4P55056 127 aa8.85□□□□□ -0.99
MSH2-201ENST00000233146 DEFB131AP59861 70 aa8.85□□□□□ -0.99
MSH2-201ENST00000233146 Q8IZM0 81 aa8.85□□□□□ -0.99
MSH2-201ENST00000233146 GRNP28799 593 aaKnown RBP8.84□□□□□ -0.99
MSH2-201ENST00000233146 PHF5AQ7RTV0 110 aaKnown RBP8.84□□□□□ -0.99
MSH2-201ENST00000233146 UBE2AP49459 152 aa8.84□□□□□ -0.99
MSH2-201ENST00000233146 CSPG4Q6UVK1 2322 aa8.84□□□□□ -0.99
MSH2-201ENST00000233146 COX7BP24311 80 aa8.83□□□□□ -1
MSH2-201ENST00000233146 C11orf71Q6IPW1 123 aa8.83□□□□□ -1
MSH2-201ENST00000233146 FLNBO75369 2602 aaKnown RBP8.83□□□□□ -1
MSH2-201ENST00000233146 FAM30AQ9NZY2 134 aa8.83□□□□□ -1
MSH2-201ENST00000233146 TRGV1A0A0A0MS02 117 aa8.82□□□□□ -1
MSH2-201ENST00000233146 COX17Q14061 63 aa8.82□□□□□ -1
MSH2-201ENST00000233146 IGSF10Q6WRI0 2623 aa8.82□□□□□ -1
MSH2-201ENST00000233146 LY6EQ16553 131 aa8.82□□□□□ -1
MSH2-201ENST00000233146 USP9YO00507 2555 aaPredicted RBP8.82□□□□□ -1
MSH2-201ENST00000233146 LINC00959A0A1B0GUT2 108 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms