RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 C10orf126Q8N4M7 172 aa12.89□□□□□ -0.35
CLN3-263ENST00000637871 SPANXDQ9BXN6 97 aa12.89□□□□□ -0.35
CLN3-263ENST00000637871 SPANXCQ9NY87 97 aa12.89□□□□□ -0.35
CLN3-263ENST00000637871 DNAH9Q9NYC9 4486 aa12.89□□□□□ -0.35
CLN3-263ENST00000637871 IGHV3-64A0A075B6Q5 118 aa12.88□□□□□ -0.35
CLN3-263ENST00000637871 ATP6V0E2Q8NHE4 81 aa12.88□□□□□ -0.35
CLN3-263ENST00000637871 TRAV8-3A0A0A6YYJ7 113 aa12.88□□□□□ -0.35
CLN3-263ENST00000637871 TEX48A0A1B0GUV7 120 aa12.88□□□□□ -0.35
CLN3-263ENST00000637871 NDUFA1O15239 70 aa12.88□□□□□ -0.35
CLN3-263ENST00000637871 SPINK8P0C7L1 97 aa12.88□□□□□ -0.35
CLN3-263ENST00000637871 NBEAL2Q6ZNJ1 2754 aa12.87□□□□□ -0.35
CLN3-263ENST00000637871 A0A0B4J2C4 111 aa12.87□□□□□ -0.35
CLN3-263ENST00000637871 LOC100131303A0A0U1RQF7 123 aa12.87□□□□□ -0.35
CLN3-263ENST00000637871 A8MZ25 164 aa12.87□□□□□ -0.35
CLN3-263ENST00000637871 IFITM1P13164 125 aa12.87□□□□□ -0.35
CLN3-263ENST00000637871 CIRBPQ14011 172 aaKnown RBP12.87□□□□□ -0.35
CLN3-263ENST00000637871 COPS9Q8WXC6 57 aa12.87□□□□□ -0.35
CLN3-263ENST00000637871 FAM222AQ5U5X8 452 aa12.86□□□□□ -0.35
CLN3-263ENST00000637871 NAA38Q9BRA0 125 aaKnown RBP12.86□□□□□ -0.35
CLN3-263ENST00000637871 PGPEP1Q9NXJ5 209 aa12.86□□□□□ -0.35
CLN3-263ENST00000637871 COL7A1Q02388 2944 aa12.85□□□□□ -0.35
CLN3-263ENST00000637871 PRO1854Q9UHT4 67 aa12.85□□□□□ -0.35
CLN3-263ENST00000637871 TRAV13-1A0A0B4J241 112 aa12.84□□□□□ -0.35
CLN3-263ENST00000637871 GYPEP15421 78 aa12.84□□□□□ -0.35
CLN3-263ENST00000637871 HERV-K104P63124 156 aa12.84□□□□□ -0.35
CLN3-263ENST00000637871 DEFB135Q30KP9 77 aa12.84□□□□□ -0.35
CLN3-263ENST00000637871 CHCHD5Q9BSY4 110 aa12.84□□□□□ -0.35
CLN3-263ENST00000637871 RETNQ9HD89 108 aa12.84□□□□□ -0.35
CLN3-263ENST00000637871 A0A1B0GUV1 79 aa12.84□□□□□ -0.35
CLN3-263ENST00000637871 CFC1BP0CG36 223 aa12.84□□□□□ -0.35
CLN3-263ENST00000637871 CFC1P0CG37 223 aa12.84□□□□□ -0.35
CLN3-263ENST00000637871 COX6A2Q02221 97 aa12.84□□□□□ -0.35
CLN3-263ENST00000637871 SH2D6Q7Z4S9 175 aa12.84□□□□□ -0.35
CLN3-263ENST00000637871 HUWE1Q7Z6Z7 4374 aaKnown RBP12.83□□□□□ -0.35
CLN3-263ENST00000637871 TRAV26-1A0A087WT03 109 aa12.83□□□□□ -0.36
CLN3-263ENST00000637871 F8W1H4 67 aa12.83□□□□□ -0.36
CLN3-263ENST00000637871 PAX4O43316 350 aa12.83□□□□□ -0.36
CLN3-263ENST00000637871 APOMO95445 188 aa12.83□□□□□ -0.36
CLN3-263ENST00000637871 DAD1P61803 113 aa12.83□□□□□ -0.36
CLN3-263ENST00000637871 MUSTN1Q8IVN3 82 aa12.83□□□□□ -0.36
CLN3-263ENST00000637871 LITAFQ99732 161 aa12.83□□□□□ -0.36
CLN3-263ENST00000637871 PPDPFQ9H3Y8 114 aa12.83□□□□□ -0.36
CLN3-263ENST00000637871 TENM3Q9P273 2699 aa12.83□□□□□ -0.36
CLN3-263ENST00000637871 IGHV4-28A0A0C4DH34 117 aa12.82□□□□□ -0.36
CLN3-263ENST00000637871 SPART-AS1P0CW21 52 aa12.82□□□□□ -0.36
CLN3-263ENST00000637871 GAGE6Q13070 117 aa12.82□□□□□ -0.36
CLN3-263ENST00000637871 MIAQ16674 131 aa12.82□□□□□ -0.36
CLN3-263ENST00000637871 A4D1N5 150 aa12.81□□□□□ -0.36
CLN3-263ENST00000637871 SMIM1B2RUZ4 78 aa12.81□□□□□ -0.36
CLN3-263ENST00000637871 ATP5G1P05496 136 aa12.81□□□□□ -0.36
CLN3-263ENST00000637871 Q8NAQ8 132 aa12.81□□□□□ -0.36
CLN3-263ENST00000637871 B9D2Q9BPU9 175 aa12.81□□□□□ -0.36
CLN3-263ENST00000637871 TRBV20-1A0A075B6N2 111 aa12.8□□□□□ -0.36
CLN3-263ENST00000637871 F5H768 121 aa12.8□□□□□ -0.36
CLN3-263ENST00000637871 K7ERU9 68 aa12.8□□□□□ -0.36
CLN3-263ENST00000637871 TSPAN13O95857 204 aa12.8□□□□□ -0.36
CLN3-263ENST00000637871 SFTA2Q6UW10 78 aa12.8□□□□□ -0.36
CLN3-263ENST00000637871 TGP01266 2768 aa12.79□□□□□ -0.36
CLN3-263ENST00000637871 LINC01561Q8N1V8 128 aa12.78□□□□□ -0.36
CLN3-263ENST00000637871 ERG28Q9UKR5 140 aa12.78□□□□□ -0.36
CLN3-263ENST00000637871 PRSS2P07478 247 aa12.77□□□□□ -0.36
CLN3-263ENST00000637871 OCIAD2Q56VL3 154 aa12.77□□□□□ -0.36
CLN3-263ENST00000637871 Q9H8V8 135 aa12.77□□□□□ -0.37
CLN3-263ENST00000637871 IGHV3-33P01772 117 aa12.76□□□□□ -0.37
CLN3-263ENST00000637871 MRPL23Q16540 153 aaKnown RBP12.76□□□□□ -0.37
CLN3-263ENST00000637871 TM2D3Q9BRN9 247 aa12.76□□□□□ -0.37
CLN3-263ENST00000637871 IGLV4-60A0A075B6I1 120 aa12.75□□□□□ -0.37
CLN3-263ENST00000637871 SS18Q15532 418 aa12.75□□□□□ -0.37
CLN3-263ENST00000637871 ZNF625Q96I27 306 aaPredicted RBP12.75□□□□□ -0.37
CLN3-263ENST00000637871 A0A087WZ39 114 aa12.73□□□□□ -0.37
CLN3-263ENST00000637871 IGHV3OR16-9A0A0B4J2B5 98 aa12.73□□□□□ -0.37
CLN3-263ENST00000637871 LOC107984156A0A0G2JMH3 177 aa12.73□□□□□ -0.37
CLN3-263ENST00000637871 ADAMTSL4-AS1Q5T5F5 129 aa12.73□□□□□ -0.37
CLN3-263ENST00000637871 ARL17AQ8IVW1 177 aa12.73□□□□□ -0.37
CLN3-263ENST00000637871 LINC00959A0A1B0GUT2 108 aa12.73□□□□□ -0.37
CLN3-263ENST00000637871 TMEM262E9PQX1 116 aa12.73□□□□□ -0.37
CLN3-263ENST00000637871 SPATA25Q9BR10 227 aa12.73□□□□□ -0.37
CLN3-263ENST00000637871 RBX1P62877 108 aa12.72□□□□□ -0.37
CLN3-263ENST00000637871 COX7B2Q8TF08 81 aa12.72□□□□□ -0.37
CLN3-263ENST00000637871 H3BMG7 143 aa12.71□□□□□ -0.37
CLN3-263ENST00000637871 TRBV30A0A0K0K1B3 111 aa12.7□□□□□ -0.38
CLN3-263ENST00000637871 SCGB1C2P0DMR2 95 aa12.7□□□□□ -0.38
CLN3-263ENST00000637871 CBY1Q9Y3M2 126 aa12.7□□□□□ -0.38
CLN3-263ENST00000637871 ICOSQ9Y6W8 199 aa12.7□□□□□ -0.38
CLN3-263ENST00000637871 H3BNG1 76 aa12.7□□□□□ -0.38
CLN3-263ENST00000637871 MEIG1Q5JSS6 88 aa12.7□□□□□ -0.38
CLN3-263ENST00000637871 PSMB2P49721 201 aa12.69□□□□□ -0.38
CLN3-263ENST00000637871 STAB2Q8WWQ8 2551 aa12.68□□□□□ -0.38
CLN3-263ENST00000637871 J3QR89 54 aa12.68□□□□□ -0.38
CLN3-263ENST00000637871 DEFB4AO15263 64 aa12.68□□□□□ -0.38
CLN3-263ENST00000637871 COX6CP09669 75 aa12.68□□□□□ -0.38
CLN3-263ENST00000637871 LINC00308Q8TCZ7 52 aa12.68□□□□□ -0.38
CLN3-263ENST00000637871 CELA1Q9UNI1 258 aa12.68□□□□□ -0.38
CLN3-263ENST00000637871 LELP1Q5T871 98 aa12.67□□□□□ -0.38
CLN3-263ENST00000637871 NHLRC4P0CG21 123 aaPredicted RBP12.66□□□□□ -0.38
CLN3-263ENST00000637871 Q1RN00 199 aa12.66□□□□□ -0.38
CLN3-263ENST00000637871 PRO0461Q9UI25 63 aa12.66□□□□□ -0.38
CLN3-263ENST00000637871 C11orf68Q9H3H3 251 aaKnown RBP12.66□□□□□ -0.38
CLN3-263ENST00000637871 IGKV3OR2-268A0A0C4DH90 116 aa12.65□□□□□ -0.38
CLN3-263ENST00000637871 IBA57-AS1B1ANH7 110 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 728.1 ms