RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 A0A1B0GWB2 263 aa7.52□□□□□ -1.21
CUX1-221ENST00000622516 DAND5Q8N907 189 aa7.52□□□□□ -1.21
CUX1-221ENST00000622516 ZNF625Q96I27 306 aaPredicted RBP7.52□□□□□ -1.21
CUX1-221ENST00000622516 FBN1P35555 2871 aaKnown RBP7.52□□□□□ -1.21
CUX1-221ENST00000622516 IGHV1-58A0A0C4DH39 117 aa7.52□□□□□ -1.21
CUX1-221ENST00000622516 A0A0U1RRA0 63 aa7.52□□□□□ -1.21
CUX1-221ENST00000622516 ADAMTSL4-AS1Q5T5F5 129 aa7.52□□□□□ -1.21
CUX1-221ENST00000622516 NDUFA12Q9UI09 145 aa7.52□□□□□ -1.21
CUX1-221ENST00000622516 A0A096LPF7 62 aa7.51□□□□□ -1.21
CUX1-221ENST00000622516 TRBV10-1A0A0K0K1A3 114 aa7.51□□□□□ -1.21
CUX1-221ENST00000622516 DAZ4Q86SG3 579 aaKnown RBP7.51□□□□□ -1.21
CUX1-221ENST00000622516 VSIG2Q96IQ7 327 aa7.51□□□□□ -1.21
CUX1-221ENST00000622516 DAZ3Q9NR90 486 aaKnown RBP7.51□□□□□ -1.21
CUX1-221ENST00000622516 F5H768 121 aa7.51□□□□□ -1.21
CUX1-221ENST00000622516 CCDC179H3BU77 68 aa7.51□□□□□ -1.21
CUX1-221ENST00000622516 EIF4EBP3O60516 100 aaPredicted RBP7.51□□□□□ -1.21
CUX1-221ENST00000622516 MT-ATP8P03928 68 aa7.51□□□□□ -1.21
CUX1-221ENST00000622516 LINC00242Q5T6M2 205 aa7.51□□□□□ -1.21
CUX1-221ENST00000622516 FHL2Q14192 279 aa7.5□□□□□ -1.21
CUX1-221ENST00000622516 DEFB135Q30KP9 77 aa7.5□□□□□ -1.21
CUX1-221ENST00000622516 OVOL2Q9BRP0 275 aa7.5□□□□□ -1.21
CUX1-221ENST00000622516 UBE2L6O14933 153 aa7.5□□□□□ -1.21
CUX1-221ENST00000622516 MRPL23Q16540 153 aaKnown RBP7.5□□□□□ -1.21
CUX1-221ENST00000622516 TMEM101Q96IK0 257 aa7.5□□□□□ -1.21
CUX1-221ENST00000622516 CDIP1Q9H305 208 aa7.5□□□□□ -1.21
CUX1-221ENST00000622516 CDC42SE2Q9NRR3 84 aa7.49□□□□□ -1.21
CUX1-221ENST00000622516 NOTCH1P46531 2555 aa7.49□□□□□ -1.21
CUX1-221ENST00000622516 PSMB2P49721 201 aa7.49□□□□□ -1.21
CUX1-221ENST00000622516 ZFAND6Q6FIF0 208 aa7.48□□□□□ -1.21
CUX1-221ENST00000622516 SBSPONQ8IVN8 264 aa7.48□□□□□ -1.21
CUX1-221ENST00000622516 TMEM243Q9BU79 118 aa7.48□□□□□ -1.21
CUX1-221ENST00000622516 X6R8D5 127 aa7.48□□□□□ -1.21
CUX1-221ENST00000622516 TRBV6-4A0A1B0GX49 114 aa7.48□□□□□ -1.21
CUX1-221ENST00000622516 FOXI1Q12951 378 aa7.48□□□□□ -1.21
CUX1-221ENST00000622516 LITAFQ99732 161 aa7.48□□□□□ -1.21
CUX1-221ENST00000622516 IGLV4-60A0A075B6I1 120 aa7.47□□□□□ -1.21
CUX1-221ENST00000622516 XGP55808 180 aa7.47□□□□□ -1.21
CUX1-221ENST00000622516 SEC61GP60059 68 aa7.47□□□□□ -1.21
CUX1-221ENST00000622516 MRAPQ8TCY5 172 aa7.47□□□□□ -1.21
CUX1-221ENST00000622516 CHCHD5Q9BSY4 110 aa7.47□□□□□ -1.21
CUX1-221ENST00000622516 TMEM126AQ9H061 195 aa7.47□□□□□ -1.21
CUX1-221ENST00000622516 C9orf66Q5T8R8 295 aa7.47□□□□□ -1.21
CUX1-221ENST00000622516 PRO1854Q9UHT4 67 aa7.47□□□□□ -1.21
CUX1-221ENST00000622516 FAM222AQ5U5X8 452 aa7.47□□□□□ -1.21
CUX1-221ENST00000622516 PRO0461Q9UI25 63 aa7.47□□□□□ -1.21
CUX1-221ENST00000622516 COL6A5A8TX70 2615 aa7.46□□□□□ -1.21
CUX1-221ENST00000622516 SCGB1C2P0DMR2 95 aa7.46□□□□□ -1.21
CUX1-221ENST00000622516 GYPEP15421 78 aa7.46□□□□□ -1.21
CUX1-221ENST00000622516 Q9H8V8 135 aa7.46□□□□□ -1.21
CUX1-221ENST00000622516 TIRAPP58753 221 aa7.46□□□□□ -1.22
CUX1-221ENST00000622516 HERVK_113P63121 156 aa7.45□□□□□ -1.22
CUX1-221ENST00000622516 TRBV6-8A0A0A6YYG3 113 aa7.45□□□□□ -1.22
CUX1-221ENST00000622516 KIR2DL5BQ8NHK3 375 aa7.45□□□□□ -1.22
CUX1-221ENST00000622516 IGLV5-45A0A087WSX0 123 aa7.44□□□□□ -1.22
CUX1-221ENST00000622516 SMIM1B2RUZ4 78 aa7.44□□□□□ -1.22
CUX1-221ENST00000622516 TCL1BO95988 128 aa7.44□□□□□ -1.22
CUX1-221ENST00000622516 Q1RN00 199 aa7.44□□□□□ -1.22
CUX1-221ENST00000622516 ATP6V0E2Q8NHE4 81 aa7.44□□□□□ -1.22
CUX1-221ENST00000622516 TMEM262E9PQX1 116 aa7.44□□□□□ -1.22
CUX1-221ENST00000622516 CLPSL2Q6UWE3 100 aa7.44□□□□□ -1.22
CUX1-221ENST00000622516 NDUFV3P56181 108 aaKnown RBP7.44□□□□□ -1.22
CUX1-221ENST00000622516 IGHV3-33P01772 117 aa7.43□□□□□ -1.22
CUX1-221ENST00000622516 FAM19A5Q7Z5A7 132 aaPredicted RBP7.43□□□□□ -1.22
CUX1-221ENST00000622516 TOMM7Q9P0U1 55 aa7.43□□□□□ -1.22
CUX1-221ENST00000622516 TENM3Q9P273 2699 aa7.43□□□□□ -1.22
CUX1-221ENST00000622516 MEIG1Q5JSS6 88 aa7.43□□□□□ -1.22
CUX1-221ENST00000622516 HTN3P15516 51 aa7.42□□□□□ -1.22
CUX1-221ENST00000622516 IGHV4-28A0A0C4DH34 117 aa7.42□□□□□ -1.22
CUX1-221ENST00000622516 SMCPP49901 116 aaPredicted RBP7.42□□□□□ -1.22
CUX1-221ENST00000622516 MIAQ16674 131 aa7.42□□□□□ -1.22
CUX1-221ENST00000622516 PRIMA1Q86XR5 153 aa7.42□□□□□ -1.22
CUX1-221ENST00000622516 Q8N3U1 123 aa7.42□□□□□ -1.22
CUX1-221ENST00000622516 CELA1Q9UNI1 258 aa7.42□□□□□ -1.22
CUX1-221ENST00000622516 IGLV5-39A0A0G2JS06 123 aa7.41□□□□□ -1.22
CUX1-221ENST00000622516 C5orf38Q86SI9 138 aa7.41□□□□□ -1.22
CUX1-221ENST00000622516 OR13C6PQ8NH95 151 aa7.41□□□□□ -1.22
CUX1-221ENST00000622516 LOC107984640A0A0U1RRK4 108 aa7.41□□□□□ -1.22
CUX1-221ENST00000622516 NDUFA1O15239 70 aa7.41□□□□□ -1.22
CUX1-221ENST00000622516 TRBV20-1A0A075B6N2 111 aa7.41□□□□□ -1.22
CUX1-221ENST00000622516 PAX4O43316 350 aa7.4□□□□□ -1.22
CUX1-221ENST00000622516 C11orf68Q9H3H3 251 aaKnown RBP7.4□□□□□ -1.22
CUX1-221ENST00000622516 IGHV4-30-4P0DP06 118 aa7.4□□□□□ -1.23
CUX1-221ENST00000622516 LINC00612Q8N6U2 182 aa7.4□□□□□ -1.23
CUX1-221ENST00000622516 PPDPFLQ8WWR9 84 aa7.4□□□□□ -1.23
CUX1-221ENST00000622516 PRO0255Q9UI72 69 aa7.4□□□□□ -1.23
CUX1-221ENST00000622516 A0A0B4J2C4 111 aa7.39□□□□□ -1.23
CUX1-221ENST00000622516 SPANXDQ9BXN6 97 aa7.39□□□□□ -1.23
CUX1-221ENST00000622516 SPANXCQ9NY87 97 aa7.39□□□□□ -1.23
CUX1-221ENST00000622516 CMYA5Q8N3K9 4069 aa7.39□□□□□ -1.23
CUX1-221ENST00000622516 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.39□□□□□ -1.23
CUX1-221ENST00000622516 XCL1P47992 114 aa7.39□□□□□ -1.23
CUX1-221ENST00000622516 NBEAL1Q6ZS30 2694 aa7.39□□□□□ -1.23
CUX1-221ENST00000622516 APOC4P55056 127 aa7.38□□□□□ -1.23
CUX1-221ENST00000622516 SOSTDC1Q6X4U4 206 aa7.38□□□□□ -1.23
CUX1-221ENST00000622516 TRIAP1O43715 76 aa7.38□□□□□ -1.23
CUX1-221ENST00000622516 IFITM1P13164 125 aa7.38□□□□□ -1.23
CUX1-221ENST00000622516 DAD1P61803 113 aa7.38□□□□□ -1.23
CUX1-221ENST00000622516 CIRBPQ14011 172 aaKnown RBP7.38□□□□□ -1.23
CUX1-221ENST00000622516 FAM19A3Q7Z5A8 133 aa7.38□□□□□ -1.23
CUX1-221ENST00000622516 J3KT08 172 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms