RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 Q8N3U1 123 aa7.73□□□□□ -1.17
LINC00539-204ENST00000608957 CDC42SE2Q9NRR3 84 aa7.73□□□□□ -1.17
LINC00539-204ENST00000608957 IGLV4-69A0A075B6H9 119 aa7.72□□□□□ -1.17
LINC00539-204ENST00000608957 TRAV9-2A0A087WT02 112 aa7.72□□□□□ -1.17
LINC00539-204ENST00000608957 TRAV8-6A0A0B4J262 113 aa7.72□□□□□ -1.17
LINC00539-204ENST00000608957 A0A1B0GUV1 79 aa7.72□□□□□ -1.17
LINC00539-204ENST00000608957 TMEM262E9PQX1 116 aa7.72□□□□□ -1.17
LINC00539-204ENST00000608957 CDK2AP2O75956 126 aa7.72□□□□□ -1.17
LINC00539-204ENST00000608957 RBX1P62877 108 aa7.72□□□□□ -1.17
LINC00539-204ENST00000608957 MPV17L2Q567V2 206 aa7.72□□□□□ -1.17
LINC00539-204ENST00000608957 PAM16Q9Y3D7 125 aa7.72□□□□□ -1.17
LINC00539-204ENST00000608957 IGLV4-60A0A075B6I1 120 aa7.71□□□□□ -1.18
LINC00539-204ENST00000608957 A0A087WTM6 91 aa7.71□□□□□ -1.18
LINC00539-204ENST00000608957 hDV102S1A0JD36 115 aa7.71□□□□□ -1.18
LINC00539-204ENST00000608957 HSBP1L1C9JCN9 74 aa7.71□□□□□ -1.18
LINC00539-204ENST00000608957 IGHV3-30P01768 117 aa7.71□□□□□ -1.18
LINC00539-204ENST00000608957 IGHV3-33P01772 117 aa7.71□□□□□ -1.18
LINC00539-204ENST00000608957 IGLC3P0DOY3 106 aa7.71□□□□□ -1.18
LINC00539-204ENST00000608957 IGHV3-30-3P0DP02 117 aa7.71□□□□□ -1.18
LINC00539-204ENST00000608957 IGHV3-30-5P0DP03 117 aa7.71□□□□□ -1.18
LINC00539-204ENST00000608957 NFE4Q86UQ8 179 aa7.71□□□□□ -1.18
LINC00539-204ENST00000608957 CHAC1Q9BUX1 264 aa7.71□□□□□ -1.18
LINC00539-204ENST00000608957 C11orf86A6NJI1 115 aa7.7□□□□□ -1.18
LINC00539-204ENST00000608957 IBA57-AS1B1ANH7 110 aa7.7□□□□□ -1.18
LINC00539-204ENST00000608957 K7EP13 123 aa7.7□□□□□ -1.18
LINC00539-204ENST00000608957 UBE2D1P51668 147 aa7.7□□□□□ -1.18
LINC00539-204ENST00000608957 MAJINQ3KP22 176 aa7.7□□□□□ -1.18
LINC00539-204ENST00000608957 SPATA45Q537H7 98 aa7.7□□□□□ -1.18
LINC00539-204ENST00000608957 A0A0J9YXV3 536 aa7.69□□□□□ -1.18
LINC00539-204ENST00000608957 LRCOL1A6NCL2 159 aa7.69□□□□□ -1.18
LINC00539-204ENST00000608957 C10orf126Q8N4M7 172 aa7.69□□□□□ -1.18
LINC00539-204ENST00000608957 PCLOQ9Y6V0 5065 aa7.68□□□□□ -1.18
LINC00539-204ENST00000608957 TRAV13-1A0A0B4J241 112 aa7.68□□□□□ -1.18
LINC00539-204ENST00000608957 TINCRA0A1B0GVN0 87 aa7.68□□□□□ -1.18
LINC00539-204ENST00000608957 Q9HAA7 133 aa7.68□□□□□ -1.18
LINC00539-204ENST00000608957 ANGP03950 147 aaKnown RBP7.67□□□□□ -1.18
LINC00539-204ENST00000608957 ZNF22P17026 224 aaPredicted RBP7.67□□□□□ -1.18
LINC00539-204ENST00000608957 SEC11AP67812 179 aa7.67□□□□□ -1.18
LINC00539-204ENST00000608957 ANKRD39Q53RE8 183 aa7.67□□□□□ -1.18
LINC00539-204ENST00000608957 TMEM170BQ5T4T1 132 aa7.67□□□□□ -1.18
LINC00539-204ENST00000608957 FAM19A3Q7Z5A8 133 aa7.67□□□□□ -1.18
LINC00539-204ENST00000608957 STPG4Q8N801 248 aa7.67□□□□□ -1.18
LINC00539-204ENST00000608957 GEMIN7Q9H840 131 aaKnown RBP7.67□□□□□ -1.18
LINC00539-204ENST00000608957 IGKV3OR2-268A0A0C4DH90 116 aa7.66□□□□□ -1.18
LINC00539-204ENST00000608957 KRTAP10-1P60331 282 aa7.66□□□□□ -1.18
LINC00539-204ENST00000608957 HERVK_113P61574 105 aa7.66□□□□□ -1.18
LINC00539-204ENST00000608957 HERVK_113P63121 156 aa7.66□□□□□ -1.18
LINC00539-204ENST00000608957 CLPSL2Q6UWE3 100 aa7.66□□□□□ -1.18
LINC00539-204ENST00000608957 MAPKAPK5-AS1Q8N8E1 139 aa7.66□□□□□ -1.18
LINC00539-204ENST00000608957 PGPEP1Q9NXJ5 209 aa7.66□□□□□ -1.18
LINC00539-204ENST00000608957 IGLV5-45A0A087WSX0 123 aa7.65□□□□□ -1.18
LINC00539-204ENST00000608957 TSTD3H0UI37 97 aa7.65□□□□□ -1.18
LINC00539-204ENST00000608957 EREGO14944 169 aa7.65□□□□□ -1.18
LINC00539-204ENST00000608957 WFDC2Q14508 124 aa7.65□□□□□ -1.18
LINC00539-204ENST00000608957 LINC00242Q5T6M2 205 aa7.65□□□□□ -1.18
LINC00539-204ENST00000608957 LINC00269Q8N2A0 174 aa7.65□□□□□ -1.18
LINC00539-204ENST00000608957 LINC00469Q8N7U9 141 aa7.65□□□□□ -1.18
LINC00539-204ENST00000608957 PRO1933Q9H354 126 aa7.65□□□□□ -1.18
LINC00539-204ENST00000608957 ABCA13Q86UQ4 5058 aa7.64□□□□□ -1.19
LINC00539-204ENST00000608957 LINC00959A0A1B0GUT2 108 aa7.64□□□□□ -1.19
LINC00539-204ENST00000608957 TMEM223A0PJW6 202 aa7.64□□□□□ -1.19
LINC00539-204ENST00000608957 E9PLD3 99 aa7.64□□□□□ -1.19
LINC00539-204ENST00000608957 XGP55808 180 aa7.64□□□□□ -1.19
LINC00539-204ENST00000608957 REG3AQ06141 175 aa7.64□□□□□ -1.19
LINC00539-204ENST00000608957 SS18Q15532 418 aa7.64□□□□□ -1.19
LINC00539-204ENST00000608957 Q8N1X5 172 aa7.64□□□□□ -1.19
LINC00539-204ENST00000608957 KLK12Q9UKR0 248 aa7.64□□□□□ -1.19
LINC00539-204ENST00000608957 H3BRM9 83 aa7.63□□□□□ -1.19
LINC00539-204ENST00000608957 CCL25O15444 150 aa7.63□□□□□ -1.19
LINC00539-204ENST00000608957 CRPP02741 224 aa7.63□□□□□ -1.19
LINC00539-204ENST00000608957 NMUP48645 174 aa7.63□□□□□ -1.19
LINC00539-204ENST00000608957 COX6A2Q02221 97 aa7.63□□□□□ -1.19
LINC00539-204ENST00000608957 PRR34Q9NV39 138 aa7.63□□□□□ -1.19
LINC00539-204ENST00000608957 CDKN2A-AS1Q9UH64 79 aa7.63□□□□□ -1.19
LINC00539-204ENST00000608957 IGKV2D-26A0A0A0MRZ7 120 aa7.62□□□□□ -1.19
LINC00539-204ENST00000608957 PSCAO43653 123 aa7.62□□□□□ -1.19
LINC00539-204ENST00000608957 Q8N814 137 aa7.62□□□□□ -1.19
LINC00539-204ENST00000608957 COX8AP10176 69 aa7.61□□□□□ -1.19
LINC00539-204ENST00000608957 UBE2WQ96B02 151 aa7.61□□□□□ -1.19
LINC00539-204ENST00000608957 C14orf144Q96I85 54 aa7.61□□□□□ -1.19
LINC00539-204ENST00000608957 UQCR10Q9UDW1 63 aa7.61□□□□□ -1.19
LINC00539-204ENST00000608957 DNAH8Q96JB1 4490 aa7.61□□□□□ -1.19
LINC00539-204ENST00000608957 IGHV3-64A0A075B6Q5 118 aa7.6□□□□□ -1.19
LINC00539-204ENST00000608957 IGHV3OR16-9A0A0B4J2B5 98 aa7.6□□□□□ -1.19
LINC00539-204ENST00000608957 LEPROTO15243 131 aa7.6□□□□□ -1.19
LINC00539-204ENST00000608957 SPINK8P0C7L1 97 aa7.6□□□□□ -1.19
LINC00539-204ENST00000608957 GCSHP23434 173 aa7.6□□□□□ -1.19
LINC00539-204ENST00000608957 XCL1P47992 114 aa7.6□□□□□ -1.19
LINC00539-204ENST00000608957 ENHOQ6UWT2 76 aa7.6□□□□□ -1.19
LINC00539-204ENST00000608957 CHCHD10Q8WYQ3 142 aaPredicted RBP7.6□□□□□ -1.19
LINC00539-204ENST00000608957 IGLV10-54A0A075B6I4 117 aa7.59□□□□□ -1.19
LINC00539-204ENST00000608957 TRAV8-4A0A0B4J246 113 aa7.59□□□□□ -1.19
LINC00539-204ENST00000608957 IGHV1-58A0A0C4DH39 117 aa7.59□□□□□ -1.19
LINC00539-204ENST00000608957 PCP4L1A6NKN8 68 aa7.59□□□□□ -1.19
LINC00539-204ENST00000608957 SMIM1B2RUZ4 78 aa7.59□□□□□ -1.19
LINC00539-204ENST00000608957 LECT2O14960 151 aa7.59□□□□□ -1.19
LINC00539-204ENST00000608957 HAMPP81172 84 aa7.59□□□□□ -1.19
LINC00539-204ENST00000608957 MIAQ16674 131 aa7.59□□□□□ -1.19
LINC00539-204ENST00000608957 SLC25A34Q6PIV7 304 aa7.59□□□□□ -1.19
LINC00539-204ENST00000608957 CD164L2Q6UWJ8 174 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms