RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 ZNF22P17026 224 aaPredicted RBP4.28□□□□□ -1.72
LIG3-206ENST00000586058 MALP21145 153 aa4.28□□□□□ -1.72
LIG3-206ENST00000586058 GCSHP23434 173 aa4.28□□□□□ -1.72
LIG3-206ENST00000586058 REG3AQ06141 175 aa4.28□□□□□ -1.72
LIG3-206ENST00000586058 SFTA2Q6UW10 78 aa4.28□□□□□ -1.72
LIG3-206ENST00000586058 LYPD5Q6UWN5 251 aa4.28□□□□□ -1.72
LIG3-206ENST00000586058 C10orf126Q8N4M7 172 aa4.28□□□□□ -1.72
LIG3-206ENST00000586058 C14orf144Q96I85 54 aa4.28□□□□□ -1.72
LIG3-206ENST00000586058 IGLV4-60A0A075B6I1 120 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 TMEM223A0PJW6 202 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 ZNF815PA8K554 130 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 LEPROTO15243 131 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 DLEU1O43261 78 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 APOMO95445 188 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 IGHV3-30P01768 117 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 IGHV3-33P01772 117 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 PRSS2P07478 247 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 IGHV3-30-3P0DP02 117 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 IGHV3-30-5P0DP03 117 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 CLPSL2Q6UWE3 100 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 FAM19A3Q7Z5A8 133 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 RMI2Q96E14 147 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 KRTAP4-9Q9BYQ8 210 aa4.27□□□□□ -1.73
LIG3-206ENST00000586058 MRPS16Q9Y3D3 137 aaKnown RBP4.27□□□□□ -1.73
LIG3-206ENST00000586058 IGHV3-64A0A075B6Q5 118 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 TRAV8-4A0A0B4J246 113 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 IGHV1-58A0A0C4DH39 117 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 MYMXA0A1B0GTQ4 84 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 LINC00959A0A1B0GUT2 108 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 TMEM238C9JI98 176 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 J3QQQ9 107 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 SIVA1O15304 175 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 SPINK8P0C7L1 97 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 MIAQ16674 131 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 WFDC10BQ8IUB3 73 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 LINC00269Q8N2A0 174 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 COPS9Q8WXC6 57 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 C1orf43Q9BWL3 253 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 KLK12Q9UKR0 248 aa4.26□□□□□ -1.73
LIG3-206ENST00000586058 IGLV5-45A0A087WSX0 123 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 F8WDY8 70 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 K7EP13 123 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 COX7A2LO14548 114 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 XCL1P47992 114 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 ANK2Q01484 3957 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 CIRBPQ14011 172 aaKnown RBP4.25□□□□□ -1.73
LIG3-206ENST00000586058 ESRGQ1W209 222 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 LINC01556Q5JQF7 62 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 LINC00242Q5T6M2 205 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 BOD1L2Q8IYS8 172 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 UBE2WQ96B02 151 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 TOMM7Q9P0U1 55 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 CDKN2A-AS1Q9UH64 79 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 TRRAPQ9Y4A5 3859 aa4.25□□□□□ -1.73
LIG3-206ENST00000586058 IGLV10-54A0A075B6I4 117 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 IGKV2D-26A0A0A0MRZ7 120 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 TRAV8-3A0A0A6YYJ7 113 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 A6NDN8 102 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 LINC00587B1AMM8 73 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 CXCL5P42830 114 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 HERV-K104P63124 156 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 HSD52Q0P140 79 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 SRSF9Q13242 221 aaKnown RBP eCLIP4.24□□□□□ -1.73
LIG3-206ENST00000586058 BATFQ16520 125 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 TTC32Q5I0X7 151 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 MEIG1Q5JSS6 88 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 LCE4AQ5TA78 99 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 CD164L2Q6UWJ8 174 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 PCP2Q8IVA1 136 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 LINC01561Q8N1V8 128 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 CHCHD10Q8WYQ3 142 aaPredicted RBP4.24□□□□□ -1.73
LIG3-206ENST00000586058 HIST1H4GQ99525 98 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 UPK3BQ9BT76 320 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 HIGD1BQ9P298 99 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 NDUFA12Q9UI09 145 aa4.24□□□□□ -1.73
LIG3-206ENST00000586058 A0A087WZ39 114 aa4.23□□□□□ -1.73
LIG3-206ENST00000586058 SMIM1B2RUZ4 78 aa4.23□□□□□ -1.73
LIG3-206ENST00000586058 DNAH10OSP0CZ25 163 aa4.23□□□□□ -1.73
LIG3-206ENST00000586058 PTTG1IPP53801 180 aa4.23□□□□□ -1.73
LIG3-206ENST00000586058 CKS1BP61024 79 aa4.23□□□□□ -1.73
LIG3-206ENST00000586058 TAL2Q16559 108 aa4.23□□□□□ -1.73
LIG3-206ENST00000586058 LBHQ53QV2 105 aaPredicted RBP4.23□□□□□ -1.73
LIG3-206ENST00000586058 ZFAND6Q6FIF0 208 aa4.23□□□□□ -1.73
LIG3-206ENST00000586058 COX7B2Q8TF08 81 aa4.23□□□□□ -1.73
LIG3-206ENST00000586058 COX11Q9Y6N1 276 aa4.23□□□□□ -1.73
LIG3-206ENST00000586058 PKD1L1Q8TDX9 2849 aa4.22□□□□□ -1.73
LIG3-206ENST00000586058 IGKV2D-24A0A075B6R9 120 aa4.22□□□□□ -1.73
LIG3-206ENST00000586058 GAGE12HA6NDE8 117 aa4.22□□□□□ -1.73
LIG3-206ENST00000586058 NDUFA1O15239 70 aa4.22□□□□□ -1.73
LIG3-206ENST00000586058 C6orf226Q5I0X4 101 aa4.22□□□□□ -1.73
LIG3-206ENST00000586058 C5orf38Q86SI9 138 aa4.22□□□□□ -1.73
LIG3-206ENST00000586058 Q8IZM0 81 aa4.22□□□□□ -1.73
LIG3-206ENST00000586058 ORAOV1Q8WV07 137 aa4.22□□□□□ -1.73
LIG3-206ENST00000586058 FAM104AQ969W3 186 aa4.22□□□□□ -1.73
LIG3-206ENST00000586058 Q9HAA7 133 aa4.22□□□□□ -1.73
LIG3-206ENST00000586058 PRR34Q9NV39 138 aa4.22□□□□□ -1.73
LIG3-206ENST00000586058 LINC00588Q9Y4M8 146 aa4.22□□□□□ -1.73
LIG3-206ENST00000586058 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.22□□□□□ -1.73
LIG3-206ENST00000586058 IGHV3OR16-9A0A0B4J2B5 98 aa4.21□□□□□ -1.74
LIG3-206ENST00000586058 IGLV5-39A0A0G2JS06 123 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 164.5 ms