RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 IGLC3P0DOY3 106 aa6.66□□□□□ -1.34
SMCHD1-212ENST00000585229 IGHV3-30-3P0DP02 117 aa6.66□□□□□ -1.34
SMCHD1-212ENST00000585229 IGHV3-30-5P0DP03 117 aa6.66□□□□□ -1.34
SMCHD1-212ENST00000585229 RNASE13Q5GAN3 156 aaKnown RBP6.66□□□□□ -1.34
SMCHD1-212ENST00000585229 NFE4Q86UQ8 179 aa6.66□□□□□ -1.34
SMCHD1-212ENST00000585229 Q9H8V8 135 aa6.66□□□□□ -1.34
SMCHD1-212ENST00000585229 C20orf202A1L168 122 aa6.65□□□□□ -1.34
SMCHD1-212ENST00000585229 ANGP03950 147 aaKnown RBP6.65□□□□□ -1.34
SMCHD1-212ENST00000585229 AKR1D1P51857 326 aa6.65□□□□□ -1.34
SMCHD1-212ENST00000585229 UBE2DNLQ8IWF7 75 aa6.65□□□□□ -1.34
SMCHD1-212ENST00000585229 LINC00269Q8N2A0 174 aa6.65□□□□□ -1.34
SMCHD1-212ENST00000585229 C10orf126Q8N4M7 172 aa6.65□□□□□ -1.34
SMCHD1-212ENST00000585229 KRTAP9-3Q9BYQ3 159 aa6.65□□□□□ -1.34
SMCHD1-212ENST00000585229 MRPL35Q9NZE8 188 aaKnown RBP6.65□□□□□ -1.34
SMCHD1-212ENST00000585229 CHTOPQ9Y3Y2 248 aaKnown RBP6.65□□□□□ -1.34
SMCHD1-212ENST00000585229 IGLV5-45A0A087WSX0 123 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 LINC00959A0A1B0GUT2 108 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 TINCRA0A1B0GVN0 87 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 IBA57-AS1B1ANH7 110 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 B5MCH6 92 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 MALP21145 153 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 PLNP26678 52 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 SEC11AP67812 179 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 REG3AQ06141 175 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 PYY3Q5JQD4 70 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 LINC00242Q5T6M2 205 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 ENHOQ6UWT2 76 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 KRTAP4-7Q9BYR0 210 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 KLK12Q9UKR0 248 aa6.64□□□□□ -1.35
SMCHD1-212ENST00000585229 TRAV8-4A0A0B4J246 113 aa6.63□□□□□ -1.35
SMCHD1-212ENST00000585229 A0A0J9YXV3 536 aa6.63□□□□□ -1.35
SMCHD1-212ENST00000585229 C11orf86A6NJI1 115 aa6.63□□□□□ -1.35
SMCHD1-212ENST00000585229 H0Y8G0 127 aa6.63□□□□□ -1.35
SMCHD1-212ENST00000585229 DPM2O94777 84 aa6.63□□□□□ -1.35
SMCHD1-212ENST00000585229 MIAQ16674 131 aa6.63□□□□□ -1.35
SMCHD1-212ENST00000585229 TRAV13-1A0A0B4J241 112 aa6.62□□□□□ -1.35
SMCHD1-212ENST00000585229 SCGB1D1O95968 90 aa6.62□□□□□ -1.35
SMCHD1-212ENST00000585229 IGKCP01834 107 aa6.62□□□□□ -1.35
SMCHD1-212ENST00000585229 SMIM6P0DI80 62 aa6.62□□□□□ -1.35
SMCHD1-212ENST00000585229 ZNF22P17026 224 aaPredicted RBP6.62□□□□□ -1.35
SMCHD1-212ENST00000585229 KRTAP26-1Q6PEX3 210 aa6.62□□□□□ -1.35
SMCHD1-212ENST00000585229 LINC00476Q8WZB0 136 aa6.62□□□□□ -1.35
SMCHD1-212ENST00000585229 CHAC1Q9BUX1 264 aa6.62□□□□□ -1.35
SMCHD1-212ENST00000585229 KRTAP1-5Q9BYS1 174 aa6.62□□□□□ -1.35
SMCHD1-212ENST00000585229 SACSQ9NZJ4 4579 aa6.61□□□□□ -1.35
SMCHD1-212ENST00000585229 TRAV9-2A0A087WT02 112 aa6.61□□□□□ -1.35
SMCHD1-212ENST00000585229 IGHV3OR16-9A0A0B4J2B5 98 aa6.61□□□□□ -1.35
SMCHD1-212ENST00000585229 CRPP02741 224 aa6.61□□□□□ -1.35
SMCHD1-212ENST00000585229 HERVK_113P63121 156 aa6.61□□□□□ -1.35
SMCHD1-212ENST00000585229 SS18Q15532 418 aa6.61□□□□□ -1.35
SMCHD1-212ENST00000585229 TTC32Q5I0X7 151 aa6.61□□□□□ -1.35
SMCHD1-212ENST00000585229 CLPSL2Q6UWE3 100 aa6.61□□□□□ -1.35
SMCHD1-212ENST00000585229 LINC01561Q8N1V8 128 aa6.61□□□□□ -1.35
SMCHD1-212ENST00000585229 PMCHL2Q9BQD1 86 aa6.61□□□□□ -1.35
SMCHD1-212ENST00000585229 TRAV8-3A0A0A6YYJ7 113 aa6.6□□□□□ -1.35
SMCHD1-212ENST00000585229 NBDYA0A0U1RRE5 68 aa6.6□□□□□ -1.35
SMCHD1-212ENST00000585229 CD164L2Q6UWJ8 174 aa6.6□□□□□ -1.35
SMCHD1-212ENST00000585229 CHCHD10Q8WYQ3 142 aaPredicted RBP6.6□□□□□ -1.35
SMCHD1-212ENST00000585229 UBE2WQ96B02 151 aa6.6□□□□□ -1.35
SMCHD1-212ENST00000585229 FAM30AQ9NZY2 134 aa6.6□□□□□ -1.35
SMCHD1-212ENST00000585229 IGKV3OR2-268A0A0C4DH90 116 aa6.59□□□□□ -1.35
SMCHD1-212ENST00000585229 COX6A2Q02221 97 aa6.59□□□□□ -1.35
SMCHD1-212ENST00000585229 FOXI1Q12951 378 aa6.59□□□□□ -1.35
SMCHD1-212ENST00000585229 Q6ZR54 194 aa6.59□□□□□ -1.35
SMCHD1-212ENST00000585229 A0A087WZ39 114 aa6.58□□□□□ -1.36
SMCHD1-212ENST00000585229 TMEM223A0PJW6 202 aa6.58□□□□□ -1.36
SMCHD1-212ENST00000585229 ATOH7Q8N100 152 aa6.58□□□□□ -1.36
SMCHD1-212ENST00000585229 RMI2Q96E14 147 aa6.58□□□□□ -1.36
SMCHD1-212ENST00000585229 KRTAP4-9Q9BYQ8 210 aa6.58□□□□□ -1.36
SMCHD1-212ENST00000585229 GEMIN7Q9H840 131 aaKnown RBP6.58□□□□□ -1.36
SMCHD1-212ENST00000585229 CDKN2A-AS1Q9UH64 79 aa6.58□□□□□ -1.36
SMCHD1-212ENST00000585229 DNAH10Q8IVF4 4471 aa6.58□□□□□ -1.36
SMCHD1-212ENST00000585229 KMT2AQ03164 3969 aa6.57□□□□□ -1.36
SMCHD1-212ENST00000585229 IGLV10-54A0A075B6I4 117 aa6.57□□□□□ -1.36
SMCHD1-212ENST00000585229 IGLV5-39A0A0G2JS06 123 aa6.57□□□□□ -1.36
SMCHD1-212ENST00000585229 XCL1P47992 114 aa6.57□□□□□ -1.36
SMCHD1-212ENST00000585229 LINC00469Q8N7U9 141 aa6.57□□□□□ -1.36
SMCHD1-212ENST00000585229 C1orf43Q9BWL3 253 aa6.57□□□□□ -1.36
SMCHD1-212ENST00000585229 DNAH2Q9P225 4427 aa6.57□□□□□ -1.36
SMCHD1-212ENST00000585229 GAGE12HA6NDE8 117 aa6.56□□□□□ -1.36
SMCHD1-212ENST00000585229 SMIM1B2RUZ4 78 aa6.56□□□□□ -1.36
SMCHD1-212ENST00000585229 E9PLD3 99 aa6.56□□□□□ -1.36
SMCHD1-212ENST00000585229 H3BRM9 83 aa6.56□□□□□ -1.36
SMCHD1-212ENST00000585229 COX7A2LO14548 114 aa6.56□□□□□ -1.36
SMCHD1-212ENST00000585229 LY6G6CO95867 125 aa6.56□□□□□ -1.36
SMCHD1-212ENST00000585229 HERVK_113P61574 105 aa6.56□□□□□ -1.36
SMCHD1-212ENST00000585229 TMEM170BQ5T4T1 132 aa6.56□□□□□ -1.36
SMCHD1-212ENST00000585229 COX11Q9Y6N1 276 aa6.56□□□□□ -1.36
SMCHD1-212ENST00000585229 DNAH17Q9UFH2 4485 aa6.55□□□□□ -1.36
SMCHD1-212ENST00000585229 IGHV1-58A0A0C4DH39 117 aa6.55□□□□□ -1.36
SMCHD1-212ENST00000585229 hDV102S1A0JD36 115 aa6.55□□□□□ -1.36
SMCHD1-212ENST00000585229 MAJINQ3KP22 176 aa6.55□□□□□ -1.36
SMCHD1-212ENST00000585229 Q6ZRN7 208 aaPredicted RBP6.55□□□□□ -1.36
SMCHD1-212ENST00000585229 LINC00518Q8N0U6 118 aa6.55□□□□□ -1.36
SMCHD1-212ENST00000585229 STPG4Q8N801 248 aa6.55□□□□□ -1.36
SMCHD1-212ENST00000585229 VAMP8Q9BV40 100 aa6.55□□□□□ -1.36
SMCHD1-212ENST00000585229 Q9HAA7 133 aa6.55□□□□□ -1.36
SMCHD1-212ENST00000585229 IGKV2D-24A0A075B6R9 120 aa6.54□□□□□ -1.36
SMCHD1-212ENST00000585229 LCE6AA0A183 80 aa6.54□□□□□ -1.36
SMCHD1-212ENST00000585229 HSBP1L1C9JCN9 74 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms