RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 CACNA1BQ00975 2339 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 IGHV3-15A0A0B4J1V0 119 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 IGHV1-58A0A0C4DH39 117 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 IGKV3D-7A0A0C4DH55 119 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 IGIPA6NJ69 53 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 A8MWP4 228 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 IBA57-AS1B1ANH7 110 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 DNAL4O96015 105 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 TRGV3P03979 118 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 TSPEAR-AS2P59090 65 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 RBM3P98179 157 aaKnown RBP3.04□□□□□ -1.92
SS18-223ENST00000583595 LYPD5Q6UWN5 251 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 C20orf197Q8N268 126 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 CCL4L1Q8NHW4 92 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 RNASE6Q93091 150 aaKnown RBP3.04□□□□□ -1.92
SS18-223ENST00000583595 CEP295Q9C0D2 2601 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 NACAE9PAV3 2078 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 CHD8Q9HCK8 2581 aa3.04□□□□□ -1.92
SS18-223ENST00000583595 VPS13AQ96RL7 3174 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 OBSCNQ5VST9 7968 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 TRAV13-2A0A0B4J235 113 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 H3BRN7 92 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 NDUFB3O43676 98 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 LHBP01229 141 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 IGHV1-46P01743 117 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 KRTAP1-4P0C5Y4 121 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 SAA1P0DJI8 122 aaPredicted RBP3.03□□□□□ -1.92
SS18-223ENST00000583595 BSPH1Q075Z2 132 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 MIAQ16674 131 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 ZNF826PQ6ZT77 177 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 SPANXA2-OT1Q8N9U9 137 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 DEFB124Q8NES8 71 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 TMEM167AQ8TBQ9 72 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 B9D2Q9BPU9 175 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 WDR87Q6ZQQ6 2873 aa3.03□□□□□ -1.92
SS18-223ENST00000583595 F5P12259 2224 aa3.03□□□□□ -1.93
SS18-223ENST00000583595 DMXL1Q9Y485 3027 aa3.02□□□□□ -1.93
SS18-223ENST00000583595 K7ERS5 55 aa3.02□□□□□ -1.93
SS18-223ENST00000583595 M0R1W7 72 aa3.02□□□□□ -1.93
SS18-223ENST00000583595 SAA2P0DJI9 122 aaPredicted RBP3.02□□□□□ -1.93
SS18-223ENST00000583595 ZNF80P51504 273 aaPredicted RBP3.02□□□□□ -1.93
SS18-223ENST00000583595 CIRBPQ14011 172 aaKnown RBP3.02□□□□□ -1.93
SS18-223ENST00000583595 KRTAP4-3Q9BYR4 195 aa3.02□□□□□ -1.93
SS18-223ENST00000583595 LINC00474Q9P2X8 69 aa3.02□□□□□ -1.93
SS18-223ENST00000583595 PHLDA3Q9Y5J5 127 aa3.02□□□□□ -1.93
SS18-223ENST00000583595 USP24Q9UPU5 2620 aa3.02□□□□□ -1.93
SS18-223ENST00000583595 DNAH14Q0VDD8 3507 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 A0A087WVE0 104 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 E7EUB6 86 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 F8WEM9 126 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 IGHV1-69P01742 117 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 BLCAPP62952 87 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 SS18Q15532 418 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 DEFB119Q8N690 84 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 PATE1Q8WXA2 126 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 OBSCN-AS1Q96MR7 158 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 TM2D3Q9BRN9 247 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 MRPL36Q9P0J6 103 aaKnown RBP3.01□□□□□ -1.93
SS18-223ENST00000583595 CELA1Q9UNI1 258 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 DCHS1Q96JQ0 3298 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 KMT2BQ9UMN6 2715 aaPredicted RBP3.01□□□□□ -1.93
SS18-223ENST00000583595 MAP1BP46821 2468 aaKnown RBP3.01□□□□□ -1.93
SS18-223ENST00000583595 CACNA1GO43497 2377 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 FRYLO94915 3013 aa3.01□□□□□ -1.93
SS18-223ENST00000583595 SPAG17Q6Q759 2223 aa3□□□□□ -1.93
SS18-223ENST00000583595 IGHV3-21A0A0B4J1V1 117 aa3□□□□□ -1.93
SS18-223ENST00000583595 TRBV27A0A0K0K1C4 114 aa3□□□□□ -1.93
SS18-223ENST00000583595 RPL28P46779 137 aaKnown RBP3□□□□□ -1.93
SS18-223ENST00000583595 WT1-ASQ06250 92 aa3□□□□□ -1.93
SS18-223ENST00000583595 SPANXN1Q5VSR9 72 aa3□□□□□ -1.93
SS18-223ENST00000583595 UNQ9165/PRO28630Q6UXU0 137 aa3□□□□□ -1.93
SS18-223ENST00000583595 VMO1Q7Z5L0 202 aa3□□□□□ -1.93
SS18-223ENST00000583595 KTN1-AS1Q86SY8 53 aa3□□□□□ -1.93
SS18-223ENST00000583595 DYNLRB2Q8TF09 96 aa3□□□□□ -1.93
SS18-223ENST00000583595 LINC00846Q9NV44 126 aa3□□□□□ -1.93
SS18-223ENST00000583595 C22orf24Q9Y442 160 aa3□□□□□ -1.93
SS18-223ENST00000583595 IGF2RP11717 2491 aa3□□□□□ -1.93
SS18-223ENST00000583595 CHD6Q8TD26 2715 aa2.99□□□□□ -1.93
SS18-223ENST00000583595 FAM208BQ5VWN6 2430 aa2.99□□□□□ -1.93
SS18-223ENST00000583595 IGLV3-12A0A075B6K2 115 aa2.99□□□□□ -1.93
SS18-223ENST00000583595 TRAV23DV6A0A075B6W5 121 aa2.99□□□□□ -1.93
SS18-223ENST00000583595 IGKV2-40A0A087WW87 121 aaPredicted RBP2.99□□□□□ -1.93
SS18-223ENST00000583595 TRAV12-3A0A0B4J271 114 aa2.99□□□□□ -1.93
SS18-223ENST00000583595 A6NED7 52 aa2.99□□□□□ -1.93
SS18-223ENST00000583595 MRPL33O75394 65 aaKnown RBP2.99□□□□□ -1.93
SS18-223ENST00000583595 ERC2-IT1O76042 136 aa2.99□□□□□ -1.93
SS18-223ENST00000583595 IGKV2D-40P01614 121 aaPredicted RBP2.99□□□□□ -1.93
SS18-223ENST00000583595 ESRGQ1W209 222 aa2.99□□□□□ -1.93
SS18-223ENST00000583595 ZNF833PQ6ZTB9 187 aa2.99□□□□□ -1.93
SS18-223ENST00000583595 LY6G5BQ8NDX9 201 aa2.99□□□□□ -1.93
SS18-223ENST00000583595 ZFHX4Q86UP3 3567 aa2.99□□□□□ -1.93
SS18-223ENST00000583595 ATRXP46100 2492 aa2.99□□□□□ -1.93
SS18-223ENST00000583595 CNOT1A5YKK6 2376 aaKnown RBP2.98□□□□□ -1.93
SS18-223ENST00000583595 ZFYVE26Q68DK2 2539 aa2.98□□□□□ -1.93
SS18-223ENST00000583595 IGLV3-19P01714 112 aa2.98□□□□□ -1.93
SS18-223ENST00000583595 IGKV1-16P04430 117 aa2.98□□□□□ -1.93
SS18-223ENST00000583595 IGHV3-30-3P0DP02 117 aa2.98□□□□□ -1.93
SS18-223ENST00000583595 MIFP14174 115 aa2.98□□□□□ -1.93
SS18-223ENST00000583595 RPL27AP46776 148 aaKnown RBP2.98□□□□□ -1.93
SS18-223ENST00000583595 UBE2BP63146 152 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms