RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 HIVEP2P31629 2446 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 A0A087WSZ3 146 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 IGKV3D-11A0A0A0MRZ8 115 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 TRBV6-1A0A0K0K1D8 114 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 A6NED7 52 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 LINC01546A6NGU7 62 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 E7EUB6 86 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 IFI27P40305 119 aaPredicted RBP2.21□□□□□ -2.06
NUP88-208ENST00000574087 C2orf82Q6UX34 121 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 Q6ZQT0 140 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 KRTAP13-1Q8IUC0 172 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 C20orf197Q8N268 126 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 Q8N6K4 173 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 C1orf64Q8NEQ6 169 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 MUC4Q99102 2169 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 U3KQK5 164 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 EML5Q05BV3 1969 aa2.21□□□□□ -2.06
NUP88-208ENST00000574087 TRAV12-1A0A0B4J245 112 aa2.2□□□□□ -2.06
NUP88-208ENST00000574087 TRBV30A0A0K0K1B3 111 aa2.2□□□□□ -2.06
NUP88-208ENST00000574087 TMEM30CPA0ZSE6 113 aa2.2□□□□□ -2.06
NUP88-208ENST00000574087 M0R135 149 aa2.2□□□□□ -2.06
NUP88-208ENST00000574087 ERC2-IT1O76042 136 aa2.2□□□□□ -2.06
NUP88-208ENST00000574087 CRPP02741 224 aa2.2□□□□□ -2.06
NUP88-208ENST00000574087 ZNF137PP52743 207 aa2.2□□□□□ -2.06
NUP88-208ENST00000574087 KRTAP5-7Q6L8G8 165 aa2.2□□□□□ -2.06
NUP88-208ENST00000574087 LYZL1Q6UWQ5 148 aa2.2□□□□□ -2.06
NUP88-208ENST00000574087 PROK2Q9HC23 129 aa2.2□□□□□ -2.06
NUP88-208ENST00000574087 UBE2D4Q9Y2X8 147 aa2.2□□□□□ -2.06
NUP88-208ENST00000574087 PTPRSQ13332 1948 aa2.2□□□□□ -2.06
NUP88-208ENST00000574087 KIAA1549LQ6ZVL6 1849 aa2.19□□□□□ -2.06
NUP88-208ENST00000574087 SDHAF1A6NFY7 115 aa2.19□□□□□ -2.06
NUP88-208ENST00000574087 C17orf98A8MV24 154 aa2.19□□□□□ -2.06
NUP88-208ENST00000574087 F8WEM9 126 aa2.19□□□□□ -2.06
NUP88-208ENST00000574087 ZNF22P17026 224 aaPredicted RBP2.19□□□□□ -2.06
NUP88-208ENST00000574087 PLGLAQ15195 96 aa2.19□□□□□ -2.06
NUP88-208ENST00000574087 SPTSSBQ8NFR3 76 aa2.19□□□□□ -2.06
NUP88-208ENST00000574087 LIMD2Q9BT23 127 aa2.19□□□□□ -2.06
NUP88-208ENST00000574087 FAM215AQ9Y5M1 114 aa2.19□□□□□ -2.06
NUP88-208ENST00000574087 SCN3AQ9NY46 2000 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 MDC1Q14676 2089 aaKnown RBP2.18□□□□□ -2.06
NUP88-208ENST00000574087 IGKV1D-37A0A075B6S9 117 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 IGKV1OR2-108A0A075B7D4 117 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 TEX49A0A1B0GTD5 131 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 LOC101927531A0A1B0GV80 90 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 ZNF815PA8K554 130 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 C10orf142B7Z368 130 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 F8VRH5 84 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 K7EMI3 77 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 IGHV3-33P01772 117 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 NNATQ16517 81 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 PIGYQ3MUY2 71 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 FAM27BQ5VT28 67 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 CASC2Q6XLA1 102 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 CDC42SE2Q9NRR3 84 aa2.18□□□□□ -2.06
NUP88-208ENST00000574087 IGKV2-24A0A0C4DH68 120 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 D6R8Y8 96 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 NDUFA3O95167 84 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 IGHV3-30P01768 117 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 P0C880 135 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 IGHV3-30-5P0DP03 117 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 DEFA4P12838 97 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 DEFB134Q4QY38 66 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 ATP5EP2Q5VTU8 51 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 C10orf113Q5VZT2 155 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 C20orf166-AS1Q96NR2 134 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 C14orf132Q9NPU4 83 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 TMEM14BQ9NUH8 114 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 ICOSQ9Y6W8 199 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 MYOFQ9NZM1 2061 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 SEC16AO15027 2179 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 COL4A2P08572 1712 aa2.17□□□□□ -2.06
NUP88-208ENST00000574087 SDK2Q58EX2 2172 aa2.16□□□□□ -2.06
NUP88-208ENST00000574087 MED13Q9UHV7 2174 aa2.16□□□□□ -2.06
NUP88-208ENST00000574087 NCOA6Q14686 2063 aaPredicted RBP2.16□□□□□ -2.06
NUP88-208ENST00000574087 A0A0J9YY99 117 aa2.16□□□□□ -2.06
NUP88-208ENST00000574087 H3BPC8 53 aa2.16□□□□□ -2.06
NUP88-208ENST00000574087 H7C2G1 150 aa2.16□□□□□ -2.06
NUP88-208ENST00000574087 ARMS2P0C7Q2 107 aa2.16□□□□□ -2.06
NUP88-208ENST00000574087 SFTA2Q6UW10 78 aa2.16□□□□□ -2.06
NUP88-208ENST00000574087 TMEM263Q8WUH6 116 aaKnown RBP2.16□□□□□ -2.06
NUP88-208ENST00000574087 COX14Q96I36 57 aa2.16□□□□□ -2.06
NUP88-208ENST00000574087 C22orf24Q9Y442 160 aa2.16□□□□□ -2.06
NUP88-208ENST00000574087 MPDZO75970 2070 aa2.16□□□□□ -2.06
NUP88-208ENST00000574087 IGLV10-54A0A075B6I4 117 aa2.15□□□□□ -2.07
NUP88-208ENST00000574087 TRBV6-8A0A0A6YYG3 113 aa2.15□□□□□ -2.07
NUP88-208ENST00000574087 CHKB-CPT1BH3BT56 60 aa2.15□□□□□ -2.07
NUP88-208ENST00000574087 STATHP02808 62 aa2.15□□□□□ -2.07
NUP88-208ENST00000574087 ERHP84090 104 aaKnown RBP2.15□□□□□ -2.07
NUP88-208ENST00000574087 MIR22HGQ0VDD5 57 aa2.15□□□□□ -2.07
NUP88-208ENST00000574087 C10orf128Q5T292 105 aa2.15□□□□□ -2.07
NUP88-208ENST00000574087 CACNA1DQ01668 2161 aa2.15□□□□□ -2.07
NUP88-208ENST00000574087 PCDH15Q96QU1 1955 aa2.14□□□□□ -2.07
NUP88-208ENST00000574087 TRAV23DV6A0A075B6W5 121 aa2.14□□□□□ -2.07
NUP88-208ENST00000574087 A0A0J9YX75 114 aa2.14□□□□□ -2.07
NUP88-208ENST00000574087 A0A1W2PNN7 141 aa2.14□□□□□ -2.07
NUP88-208ENST00000574087 H0YGG7 62 aa2.14□□□□□ -2.07
NUP88-208ENST00000574087 PSCAO43653 123 aa2.14□□□□□ -2.07
NUP88-208ENST00000574087 PPP1R17O96001 155 aa2.14□□□□□ -2.07
NUP88-208ENST00000574087 COX6B1P14854 86 aa2.14□□□□□ -2.07
NUP88-208ENST00000574087 KRTAP26-1Q6PEX3 210 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms