RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 SCGB3A1Q96QR1 104 aa11.59□□□□□ -0.55
USP43-204ENST00000573955 SDHAF1A6NFY7 115 aa11.58□□□□□ -0.55
USP43-204ENST00000573955 TRAV13-1A0A0B4J241 112 aa11.58□□□□□ -0.56
USP43-204ENST00000573955 PPP1R17O96001 155 aa11.58□□□□□ -0.56
USP43-204ENST00000573955 INSP01308 110 aa11.58□□□□□ -0.56
USP43-204ENST00000573955 LINC00643Q86TS7 51 aa11.58□□□□□ -0.56
USP43-204ENST00000573955 STAB1Q9NY15 2570 aa11.58□□□□□ -0.56
USP43-204ENST00000573955 ATOX1O00244 68 aa11.57□□□□□ -0.56
USP43-204ENST00000573955 ZNF415Q09FC8 603 aa11.57□□□□□ -0.56
USP43-204ENST00000573955 SLC25A29Q8N8R3 303 aa11.57□□□□□ -0.56
USP43-204ENST00000573955 CYSTM1Q9H1C7 97 aa11.57□□□□□ -0.56
USP43-204ENST00000573955 H7C423 109 aa11.57□□□□□ -0.56
USP43-204ENST00000573955 M0QY20 66 aa11.57□□□□□ -0.56
USP43-204ENST00000573955 TMEM263Q8WUH6 116 aaKnown RBP11.57□□□□□ -0.56
USP43-204ENST00000573955 V9GYY9 64 aa11.57□□□□□ -0.56
USP43-204ENST00000573955 TOMM6Q96B49 74 aa11.56□□□□□ -0.56
USP43-204ENST00000573955 FBN1P35555 2871 aaKnown RBP11.56□□□□□ -0.56
USP43-204ENST00000573955 NEXN-AS1Q8NBZ9 246 aa11.56□□□□□ -0.56
USP43-204ENST00000573955 POLR2KP53803 58 aaKnown RBP11.56□□□□□ -0.56
USP43-204ENST00000573955 RPL39P62891 51 aaKnown RBP11.56□□□□□ -0.56
USP43-204ENST00000573955 A0A0B4J2C4 111 aa11.55□□□□□ -0.56
USP43-204ENST00000573955 CXCL5P42830 114 aa11.55□□□□□ -0.56
USP43-204ENST00000573955 TP53TG1Q9Y2A0 90 aa11.55□□□□□ -0.56
USP43-204ENST00000573955 LINC00336Q6ZUF6 198 aa11.55□□□□□ -0.56
USP43-204ENST00000573955 VCYO14598 125 aa11.54□□□□□ -0.56
USP43-204ENST00000573955 PF4P02776 101 aa11.54□□□□□ -0.56
USP43-204ENST00000573955 PFN2P35080 140 aa11.54□□□□□ -0.56
USP43-204ENST00000573955 SPATA3Q8NHX4 192 aa11.54□□□□□ -0.56
USP43-204ENST00000573955 Q9UF83 564 aa11.54□□□□□ -0.56
USP43-204ENST00000573955 C1orf158Q8N1D5 194 aa11.53□□□□□ -0.56
USP43-204ENST00000573955 C11orf72Q8NBR9 251 aa11.53□□□□□ -0.56
USP43-204ENST00000573955 TRBV30A0A0K0K1B3 111 aa11.53□□□□□ -0.56
USP43-204ENST00000573955 IGLV1-51P01701 117 aa11.53□□□□□ -0.56
USP43-204ENST00000573955 C5orf38Q86SI9 138 aa11.53□□□□□ -0.56
USP43-204ENST00000573955 NBEAL2Q6ZNJ1 2754 aa11.52□□□□□ -0.56
USP43-204ENST00000573955 EIF4EBP3O60516 100 aaPredicted RBP11.52□□□□□ -0.57
USP43-204ENST00000573955 TRIAP1O43715 76 aa11.52□□□□□ -0.57
USP43-204ENST00000573955 Q6ZSN1 163 aa11.52□□□□□ -0.57
USP43-204ENST00000573955 SMCR5Q8TEV8 140 aa11.52□□□□□ -0.57
USP43-204ENST00000573955 NACAE9PAV3 2078 aa11.51□□□□□ -0.57
USP43-204ENST00000573955 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.51□□□□□ -0.57
USP43-204ENST00000573955 TRBV27A0A0K0K1C4 114 aa11.51□□□□□ -0.57
USP43-204ENST00000573955 J3QQQ9 107 aa11.51□□□□□ -0.57
USP43-204ENST00000573955 TRBV6-5A0A0K0K1A5 114 aa11.5□□□□□ -0.57
USP43-204ENST00000573955 TSHBP01222 138 aa11.49□□□□□ -0.57
USP43-204ENST00000573955 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.49□□□□□ -0.57
USP43-204ENST00000573955 COX6CP09669 75 aa11.48□□□□□ -0.57
USP43-204ENST00000573955 HIST1H4AP62805 103 aaKnown RBP11.48□□□□□ -0.57
USP43-204ENST00000573955 OPRPNQ99935 248 aaPredicted RBP11.48□□□□□ -0.57
USP43-204ENST00000573955 PKD1L1Q8TDX9 2849 aa11.48□□□□□ -0.57
USP43-204ENST00000573955 TRGV1A0A0A0MS02 117 aa11.48□□□□□ -0.57
USP43-204ENST00000573955 COL6A5A8TX70 2615 aa11.48□□□□□ -0.57
USP43-204ENST00000573955 C19orf73Q9NVV2 129 aa11.47□□□□□ -0.57
USP43-204ENST00000573955 IGHV3-53P01767 116 aa11.47□□□□□ -0.57
USP43-204ENST00000573955 GIG44P09565 113 aaPredicted RBP11.47□□□□□ -0.57
USP43-204ENST00000573955 IGIPA6NJ69 53 aa11.46□□□□□ -0.57
USP43-204ENST00000573955 BEAN1Q3B7T3 259 aa11.46□□□□□ -0.57
USP43-204ENST00000573955 I3L3M4 83 aa11.46□□□□□ -0.58
USP43-204ENST00000573955 PAPPA-AS1Q5QFB9 102 aa11.46□□□□□ -0.58
USP43-204ENST00000573955 MUSTN1Q8IVN3 82 aa11.46□□□□□ -0.58
USP43-204ENST00000573955 LINC00482Q8N8I6 264 aa11.46□□□□□ -0.58
USP43-204ENST00000573955 IGHV3-38A0A0C4DH36 116 aa11.45□□□□□ -0.58
USP43-204ENST00000573955 FAM236DA0A1B0GTK5 79 aa11.45□□□□□ -0.58
USP43-204ENST00000573955 FAM236CP0DP71 79 aa11.45□□□□□ -0.58
USP43-204ENST00000573955 SERP2Q8N6R1 65 aa11.45□□□□□ -0.58
USP43-204ENST00000573955 LINC00467Q9BRT7 94 aa11.45□□□□□ -0.58
USP43-204ENST00000573955 TMEM223A0PJW6 202 aa11.45□□□□□ -0.58
USP43-204ENST00000573955 C11orf86A6NJI1 115 aa11.45□□□□□ -0.58
USP43-204ENST00000573955 TSPEAR-AS2P59090 65 aa11.45□□□□□ -0.58
USP43-204ENST00000573955 RPL18AQ02543 176 aaKnown RBP11.45□□□□□ -0.58
USP43-204ENST00000573955 Q6ZTI0 123 aa11.45□□□□□ -0.58
USP43-204ENST00000573955 UPK3BQ9BT76 320 aa11.45□□□□□ -0.58
USP43-204ENST00000573955 ICOSQ9Y6W8 199 aa11.45□□□□□ -0.58
USP43-204ENST00000573955 LGALS3P17931 250 aaKnown RBP11.44□□□□□ -0.58
USP43-204ENST00000573955 RHOHQ15669 191 aa11.43□□□□□ -0.58
USP43-204ENST00000573955 C1orf195Q5TG92 126 aa11.43□□□□□ -0.58
USP43-204ENST00000573955 NOP10Q9NPE3 64 aaKnown RBP11.43□□□□□ -0.58
USP43-204ENST00000573955 LST1O00453 97 aa11.42□□□□□ -0.58
USP43-204ENST00000573955 CMC4P56277 68 aaPredicted RBP11.42□□□□□ -0.58
USP43-204ENST00000573955 CLEC2BQ92478 149 aa11.42□□□□□ -0.58
USP43-204ENST00000573955 SDIM1Q6ZPB5 146 aa11.41□□□□□ -0.58
USP43-204ENST00000573955 C20orf203Q8NBC4 194 aa11.41□□□□□ -0.58
USP43-204ENST00000573955 TRAV8-3A0A0A6YYJ7 113 aa11.41□□□□□ -0.58
USP43-204ENST00000573955 TIMM17AQ99595 171 aa11.41□□□□□ -0.58
USP43-204ENST00000573955 IGLV4-69A0A075B6H9 119 aa11.4□□□□□ -0.58
USP43-204ENST00000573955 TMEM141Q96I45 108 aa11.4□□□□□ -0.58
USP43-204ENST00000573955 AMELXQ99217 191 aa11.4□□□□□ -0.58
USP43-204ENST00000573955 NPC2P61916 151 aa11.4□□□□□ -0.58
USP43-204ENST00000573955 RNASE13Q5GAN3 156 aaKnown RBP11.4□□□□□ -0.58
USP43-204ENST00000573955 PIK3CD-AS1Q5SR53 167 aa11.4□□□□□ -0.58
USP43-204ENST00000573955 IL17DQ8TAD2 202 aa11.4□□□□□ -0.58
USP43-204ENST00000573955 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.38□□□□□ -0.59
USP43-204ENST00000573955 IGKV2-29A2NJV5 120 aaPredicted RBP11.38□□□□□ -0.59
USP43-204ENST00000573955 PRIMA1Q86XR5 153 aa11.38□□□□□ -0.59
USP43-204ENST00000573955 CSNK1G2-AS1Q8NCQ2 148 aa11.38□□□□□ -0.59
USP43-204ENST00000573955 TIMM21Q9BVV7 248 aa11.37□□□□□ -0.59
USP43-204ENST00000573955 PLAC8L1A1L4L8 177 aa11.37□□□□□ -0.59
USP43-204ENST00000573955 IGLV4-3A0A075B6K6 122 aa11.36□□□□□ -0.59
USP43-204ENST00000573955 TRGV2A0A075B6R0 118 aa11.36□□□□□ -0.59
USP43-204ENST00000573955 NDUFC2-KCTD14E9PQ53 114 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms