RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 LINC00476Q8WZB0 136 aa4.38□□□□□ -1.71
VPS53-209ENST00000570771 AMELXQ99217 191 aa4.38□□□□□ -1.71
VPS53-209ENST00000570771 CST9LQ9H4G1 147 aa4.38□□□□□ -1.71
VPS53-209ENST00000570771 CDC42SE2Q9NRR3 84 aa4.38□□□□□ -1.71
VPS53-209ENST00000570771 LINC00588Q9Y4M8 146 aa4.38□□□□□ -1.71
VPS53-209ENST00000570771 PKHD1P08F94 4074 aa4.37□□□□□ -1.71
VPS53-209ENST00000570771 IGLV4-60A0A075B6I1 120 aa4.37□□□□□ -1.71
VPS53-209ENST00000570771 PRSS29PA6NIE9 313 aa4.37□□□□□ -1.71
VPS53-209ENST00000570771 F8VRH5 84 aa4.37□□□□□ -1.71
VPS53-209ENST00000570771 DPM2O94777 84 aa4.37□□□□□ -1.71
VPS53-209ENST00000570771 DNAH10OSP0CZ25 163 aa4.37□□□□□ -1.71
VPS53-209ENST00000570771 LINC01545Q5VT33 79 aa4.37□□□□□ -1.71
VPS53-209ENST00000570771 LINC00173Q6ZV60 143 aa4.37□□□□□ -1.71
VPS53-209ENST00000570771 WFDC10BQ8IUB3 73 aa4.37□□□□□ -1.71
VPS53-209ENST00000570771 Q8N976 141 aa4.37□□□□□ -1.71
VPS53-209ENST00000570771 GEMIN7Q9H840 131 aaKnown RBP4.37□□□□□ -1.71
VPS53-209ENST00000570771 Q9H8V8 135 aa4.37□□□□□ -1.71
VPS53-209ENST00000570771 CHTOPQ9Y3Y2 248 aaKnown RBP4.37□□□□□ -1.71
VPS53-209ENST00000570771 LRP1BQ9NZR2 4599 aa4.37□□□□□ -1.71
VPS53-209ENST00000570771 TRAV8-3A0A0A6YYJ7 113 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 TRAV13-1A0A0B4J241 112 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 TRAV8-4A0A0B4J246 113 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 LCE6AA0A183 80 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 LOC105371267A0A1B0GV96 52 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 HSBP1L1C9JCN9 74 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 IGHV3-30P01768 117 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 IGHV3-33P01772 117 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 IGHV3-30-3P0DP02 117 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 IGHV3-30-5P0DP03 117 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 HERVK_113P63121 156 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 REG3AQ06141 175 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 ODF1Q14990 250 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 JOSD1Q15040 202 aaPredicted RBP4.36□□□□□ -1.71
VPS53-209ENST00000570771 MIAQ16674 131 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 LINC00269Q8N2A0 174 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 RMI2Q96E14 147 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 OPRPNQ99935 248 aaPredicted RBP4.36□□□□□ -1.71
VPS53-209ENST00000570771 KLK12Q9UKR0 248 aa4.36□□□□□ -1.71
VPS53-209ENST00000570771 IGKV3OR2-268A0A0C4DH90 116 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 LINC00959A0A1B0GUT2 108 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 TINCRA0A1B0GVN0 87 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 H3BRM9 83 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 IGKCP01834 107 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 SMIM6P0DI80 62 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 IGLC3P0DOY3 106 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 UBE2D1P51668 147 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 HERVK_113P61574 105 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 S100A12P80511 92 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 RNASE13Q5GAN3 156 aaKnown RBP4.35□□□□□ -1.71
VPS53-209ENST00000570771 FAM19A3Q7Z5A8 133 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 NFE4Q86UQ8 179 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 UBE2WQ96B02 151 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 CHAC1Q9BUX1 264 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 PRR34Q9NV39 138 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 MRPL35Q9NZE8 188 aaKnown RBP4.35□□□□□ -1.71
VPS53-209ENST00000570771 COX11Q9Y6N1 276 aa4.35□□□□□ -1.71
VPS53-209ENST00000570771 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.35□□□□□ -1.71
VPS53-209ENST00000570771 BIRC6Q9NR09 4857 aa4.34□□□□□ -1.71
VPS53-209ENST00000570771 A0A0J9YXV3 536 aa4.34□□□□□ -1.71
VPS53-209ENST00000570771 IBA57-AS1B1ANH7 110 aa4.34□□□□□ -1.71
VPS53-209ENST00000570771 TMEM170BQ5T4T1 132 aa4.34□□□□□ -1.71
VPS53-209ENST00000570771 FAM104AQ969W3 186 aa4.34□□□□□ -1.71
VPS53-209ENST00000570771 C1orf43Q9BWL3 253 aa4.34□□□□□ -1.71
VPS53-209ENST00000570771 TM2D2Q9BX73 214 aa4.34□□□□□ -1.71
VPS53-209ENST00000570771 DNAH8Q96JB1 4490 aa4.34□□□□□ -1.71
VPS53-209ENST00000570771 APOBP04114 4563 aaKnown RBP4.33□□□□□ -1.72
VPS53-209ENST00000570771 IGLV4-69A0A075B6H9 119 aa4.33□□□□□ -1.72
VPS53-209ENST00000570771 C11orf86A6NJI1 115 aa4.33□□□□□ -1.72
VPS53-209ENST00000570771 LY6G6CO95867 125 aa4.33□□□□□ -1.72
VPS53-209ENST00000570771 PYY3Q5JQD4 70 aa4.33□□□□□ -1.72
VPS53-209ENST00000570771 LINC00242Q5T6M2 205 aa4.33□□□□□ -1.72
VPS53-209ENST00000570771 ZC2HC1BQ5TFG8 222 aa4.33□□□□□ -1.72
VPS53-209ENST00000570771 CLPSL2Q6UWE3 100 aa4.33□□□□□ -1.72
VPS53-209ENST00000570771 CD164L2Q6UWJ8 174 aa4.33□□□□□ -1.72
VPS53-209ENST00000570771 LINC00469Q8N7U9 141 aa4.33□□□□□ -1.72
VPS53-209ENST00000570771 CHCHD10Q8WYQ3 142 aaPredicted RBP4.33□□□□□ -1.72
VPS53-209ENST00000570771 PMCHL2Q9BQD1 86 aa4.33□□□□□ -1.72
VPS53-209ENST00000570771 VAMP8Q9BV40 100 aa4.33□□□□□ -1.72
VPS53-209ENST00000570771 IGLV5-45A0A087WSX0 123 aa4.32□□□□□ -1.72
VPS53-209ENST00000570771 NBDYA0A0U1RRE5 68 aa4.32□□□□□ -1.72
VPS53-209ENST00000570771 M0R2N4 97 aa4.32□□□□□ -1.72
VPS53-209ENST00000570771 COX7A2LO14548 114 aa4.32□□□□□ -1.72
VPS53-209ENST00000570771 APOMO95445 188 aa4.32□□□□□ -1.72
VPS53-209ENST00000570771 MALP21145 153 aa4.32□□□□□ -1.72
VPS53-209ENST00000570771 XCL1P47992 114 aa4.32□□□□□ -1.72
VPS53-209ENST00000570771 ENHOQ6UWT2 76 aa4.32□□□□□ -1.72
VPS53-209ENST00000570771 Q6ZR54 194 aa4.32□□□□□ -1.72
VPS53-209ENST00000570771 LINC01561Q8N1V8 128 aa4.32□□□□□ -1.72
VPS53-209ENST00000570771 IGLV10-54A0A075B6I4 117 aa4.31□□□□□ -1.72
VPS53-209ENST00000570771 IGKV2D-24A0A075B6R9 120 aa4.31□□□□□ -1.72
VPS53-209ENST00000570771 IGHV3OR16-9A0A0B4J2B5 98 aa4.31□□□□□ -1.72
VPS53-209ENST00000570771 ZNF22P17026 224 aaPredicted RBP4.31□□□□□ -1.72
VPS53-209ENST00000570771 CFAP161Q6P656 301 aa4.31□□□□□ -1.72
VPS53-209ENST00000570771 ATOH7Q8N100 152 aa4.31□□□□□ -1.72
VPS53-209ENST00000570771 PLEKHB2Q96CS7 222 aa4.31□□□□□ -1.72
VPS53-209ENST00000570771 Q9HAA7 133 aa4.31□□□□□ -1.72
VPS53-209ENST00000570771 CDKN2A-AS1Q9UH64 79 aa4.31□□□□□ -1.72
VPS53-209ENST00000570771 A0A087WZ39 114 aa4.3□□□□□ -1.72
VPS53-209ENST00000570771 TMEM223A0PJW6 202 aa4.3□□□□□ -1.72
VPS53-209ENST00000570771 GAGE12HA6NDE8 117 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms