RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 SPANXA1Q9NS26 97 aa9.65□□□□□ -0.86
CLK3-215ENST00000564353 A8MTW9 85 aa9.64□□□□□ -0.87
CLK3-215ENST00000564353 TRGV2A0A075B6R0 118 aa9.64□□□□□ -0.87
CLK3-215ENST00000564353 TEX49A0A1B0GTD5 131 aa9.64□□□□□ -0.87
CLK3-215ENST00000564353 TMEM262E9PQX1 116 aa9.64□□□□□ -0.87
CLK3-215ENST00000564353 SMR3AQ99954 134 aa9.64□□□□□ -0.87
CLK3-215ENST00000564353 KLK5Q9Y337 293 aaPredicted RBP9.64□□□□□ -0.87
CLK3-215ENST00000564353 A0A0B4J2C4 111 aa9.63□□□□□ -0.87
CLK3-215ENST00000564353 BEAN1Q3B7T3 259 aa9.63□□□□□ -0.87
CLK3-215ENST00000564353 LINC00242Q5T6M2 205 aa9.63□□□□□ -0.87
CLK3-215ENST00000564353 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.63□□□□□ -0.87
CLK3-215ENST00000564353 LRRC75A-AS1Q8N1F1 130 aa9.63□□□□□ -0.87
CLK3-215ENST00000564353 RPL13AP40429 203 aaKnown RBP9.62□□□□□ -0.87
CLK3-215ENST00000564353 MIAQ16674 131 aa9.62□□□□□ -0.87
CLK3-215ENST00000564353 LINC01006Q8NI28 216 aa9.62□□□□□ -0.87
CLK3-215ENST00000564353 ICOSQ9Y6W8 199 aa9.62□□□□□ -0.87
CLK3-215ENST00000564353 RPL36AP83881 106 aaKnown RBP9.61□□□□□ -0.87
CLK3-215ENST00000564353 LINC01620Q4KN68 170 aa9.61□□□□□ -0.87
CLK3-215ENST00000564353 RPL36ALQ969Q0 106 aaKnown RBP9.61□□□□□ -0.87
CLK3-215ENST00000564353 K7EQD1 137 aa9.61□□□□□ -0.87
CLK3-215ENST00000564353 GIG44P09565 113 aaPredicted RBP9.61□□□□□ -0.87
CLK3-215ENST00000564353 ANK3Q12955 4377 aaKnown RBP9.61□□□□□ -0.87
CLK3-215ENST00000564353 HIVEP2P31629 2446 aa9.6□□□□□ -0.87
CLK3-215ENST00000564353 TOMM7Q9P0U1 55 aa9.6□□□□□ -0.87
CLK3-215ENST00000564353 ATXN8Q156A1 80 aa9.6□□□□□ -0.87
CLK3-215ENST00000564353 PRIMA1Q86XR5 153 aa9.59□□□□□ -0.87
CLK3-215ENST00000564353 DEFB130BP0DP73 79 aa9.59□□□□□ -0.87
CLK3-215ENST00000564353 DEFB130AP0DP74 79 aa9.59□□□□□ -0.87
CLK3-215ENST00000564353 PIK3CD-AS1Q5SR53 167 aa9.59□□□□□ -0.87
CLK3-215ENST00000564353 C15orf53Q8NAA6 179 aa9.59□□□□□ -0.87
CLK3-215ENST00000564353 A0A096LPF7 62 aa9.58□□□□□ -0.88
CLK3-215ENST00000564353 J3KT08 172 aa9.58□□□□□ -0.88
CLK3-215ENST00000564353 C11orf68Q9H3H3 251 aaKnown RBP9.58□□□□□ -0.88
CLK3-215ENST00000564353 UBE2L6O14933 153 aa9.58□□□□□ -0.88
CLK3-215ENST00000564353 SOSTDC1Q6X4U4 206 aa9.58□□□□□ -0.88
CLK3-215ENST00000564353 SMIM1B2RUZ4 78 aa9.57□□□□□ -0.88
CLK3-215ENST00000564353 OR13C6PQ8NH95 151 aa9.57□□□□□ -0.88
CLK3-215ENST00000564353 TRGV4A0A0C4DH28 118 aa9.57□□□□□ -0.88
CLK3-215ENST00000564353 C9orf153Q5TBE3 101 aa9.57□□□□□ -0.88
CLK3-215ENST00000564353 C2orf82Q6UX34 121 aa9.57□□□□□ -0.88
CLK3-215ENST00000564353 SBSPONQ8IVN8 264 aa9.57□□□□□ -0.88
CLK3-215ENST00000564353 SPANXDQ9BXN6 97 aa9.57□□□□□ -0.88
CLK3-215ENST00000564353 SPANXCQ9NY87 97 aa9.57□□□□□ -0.88
CLK3-215ENST00000564353 HERVK_113P63121 156 aa9.56□□□□□ -0.88
CLK3-215ENST00000564353 PLAC8L1A1L4L8 177 aa9.55□□□□□ -0.88
CLK3-215ENST00000564353 H7C423 109 aa9.55□□□□□ -0.88
CLK3-215ENST00000564353 NDUFA1O15239 70 aa9.55□□□□□ -0.88
CLK3-215ENST00000564353 LINC00308Q8TCZ7 52 aa9.55□□□□□ -0.88
CLK3-215ENST00000564353 CDC42SE2Q9NRR3 84 aa9.55□□□□□ -0.88
CLK3-215ENST00000564353 TRBV30A0A0K0K1B3 111 aa9.55□□□□□ -0.88
CLK3-215ENST00000564353 J3QKU1 62 aa9.55□□□□□ -0.88
CLK3-215ENST00000564353 CLPSL2Q6UWE3 100 aa9.55□□□□□ -0.88
CLK3-215ENST00000564353 IGLV4-60A0A075B6I1 120 aa9.55□□□□□ -0.88
CLK3-215ENST00000564353 IL17DQ8TAD2 202 aa9.55□□□□□ -0.88
CLK3-215ENST00000564353 DEFB4AO15263 64 aa9.54□□□□□ -0.88
CLK3-215ENST00000564353 HRCT1Q6UXD1 115 aa9.54□□□□□ -0.88
CLK3-215ENST00000564353 TIRAPP58753 221 aa9.54□□□□□ -0.88
CLK3-215ENST00000564353 KRTAP1-1Q07627 177 aa9.54□□□□□ -0.88
CLK3-215ENST00000564353 CIRBPQ14011 172 aaKnown RBP9.54□□□□□ -0.88
CLK3-215ENST00000564353 C4orf26Q17RF5 130 aa9.54□□□□□ -0.88
CLK3-215ENST00000564353 Q6Q795 121 aa9.54□□□□□ -0.88
CLK3-215ENST00000564353 SPATA3Q8NHX4 192 aa9.53□□□□□ -0.88
CLK3-215ENST00000564353 TMEM243Q9BU79 118 aa9.53□□□□□ -0.88
CLK3-215ENST00000564353 OTOGQ6ZRI0 2925 aa9.53□□□□□ -0.88
CLK3-215ENST00000564353 COX6CP09669 75 aa9.53□□□□□ -0.88
CLK3-215ENST00000564353 KIR2DL5BQ8NHK3 375 aa9.53□□□□□ -0.88
CLK3-215ENST00000564353 TENM1Q9UKZ4 2725 aa9.53□□□□□ -0.88
CLK3-215ENST00000564353 TRBV10-2A0A0K0K1G8 114 aa9.52□□□□□ -0.88
CLK3-215ENST00000564353 DAZ2Q13117 558 aaKnown RBP9.52□□□□□ -0.88
CLK3-215ENST00000564353 DAZ4Q86SG3 579 aaKnown RBP9.52□□□□□ -0.88
CLK3-215ENST00000564353 C5orf38Q86SI9 138 aa9.52□□□□□ -0.88
CLK3-215ENST00000564353 DAZ3Q9NR90 486 aaKnown RBP9.52□□□□□ -0.88
CLK3-215ENST00000564353 TRRAPQ9Y4A5 3859 aa9.52□□□□□ -0.89
CLK3-215ENST00000564353 IGLV5-45A0A087WSX0 123 aa9.52□□□□□ -0.89
CLK3-215ENST00000564353 IGLV5-39A0A0G2JS06 123 aa9.51□□□□□ -0.89
CLK3-215ENST00000564353 TMEM86BQ8N661 226 aa9.51□□□□□ -0.89
CLK3-215ENST00000564353 UBE2WQ96B02 151 aa9.51□□□□□ -0.89
CLK3-215ENST00000564353 C19orf73Q9NVV2 129 aa9.51□□□□□ -0.89
CLK3-215ENST00000564353 F8WDY8 70 aa9.5□□□□□ -0.89
CLK3-215ENST00000564353 PFN2P35080 140 aa9.5□□□□□ -0.89
CLK3-215ENST00000564353 LINC00482Q8N8I6 264 aa9.5□□□□□ -0.89
CLK3-215ENST00000564353 TRBV10-1A0A0K0K1A3 114 aa9.5□□□□□ -0.89
CLK3-215ENST00000564353 FAM236AA0A1B0GUQ0 79 aa9.5□□□□□ -0.89
CLK3-215ENST00000564353 FAM236BA0A1B0GV22 79 aa9.5□□□□□ -0.89
CLK3-215ENST00000564353 IGLV1-51P01701 117 aa9.49□□□□□ -0.89
CLK3-215ENST00000564353 C16orf74Q96GX8 76 aa9.49□□□□□ -0.89
CLK3-215ENST00000564353 TRAV8-4A0A0B4J246 113 aa9.49□□□□□ -0.89
CLK3-215ENST00000564353 LST1O00453 97 aa9.48□□□□□ -0.89
CLK3-215ENST00000564353 KRTAP10-3P60369 221 aa9.48□□□□□ -0.89
CLK3-215ENST00000564353 CSNK1G2-AS1Q8NCQ2 148 aa9.48□□□□□ -0.89
CLK3-215ENST00000564353 MIR7-3HGQ8N6C7 128 aa9.48□□□□□ -0.89
CLK3-215ENST00000564353 Q9HAA7 133 aa9.48□□□□□ -0.89
CLK3-215ENST00000564353 LINC00158P58513 81 aa9.47□□□□□ -0.89
CLK3-215ENST00000564353 FHL2Q14192 279 aa9.47□□□□□ -0.89
CLK3-215ENST00000564353 FAM218AQ96MZ4 157 aa9.47□□□□□ -0.89
CLK3-215ENST00000564353 PF4P02776 101 aa9.46□□□□□ -0.89
CLK3-215ENST00000564353 XCL1P47992 114 aa9.46□□□□□ -0.89
CLK3-215ENST00000564353 Q8N3U1 123 aa9.46□□□□□ -0.89
CLK3-215ENST00000564353 RNASE1P07998 156 aaKnown RBP9.46□□□□□ -0.9
CLK3-215ENST00000564353 C1orf43Q9BWL3 253 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms