RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PRIMA1Q86XR5 153 aa9.13□□□□□ -0.95
LDLR-207ENST00000558013 F5H768 121 aa9.13□□□□□ -0.95
LDLR-207ENST00000558013 TRAV4A0A0B4J268 109 aa9.12□□□□□ -0.95
LDLR-207ENST00000558013 TRAV25A0A0B4J276 109 aa9.12□□□□□ -0.95
LDLR-207ENST00000558013 MEIG1Q5JSS6 88 aa9.11□□□□□ -0.95
LDLR-207ENST00000558013 A0A1B0GV72 72 aa9.11□□□□□ -0.95
LDLR-207ENST00000558013 KRTAP1-1Q07627 177 aa9.11□□□□□ -0.95
LDLR-207ENST00000558013 GAGE6Q13070 117 aa9.11□□□□□ -0.95
LDLR-207ENST00000558013 DAZ2Q13117 558 aaKnown RBP9.11□□□□□ -0.95
LDLR-207ENST00000558013 DAZ4Q86SG3 579 aaKnown RBP9.11□□□□□ -0.95
LDLR-207ENST00000558013 DAZ3Q9NR90 486 aaKnown RBP9.11□□□□□ -0.95
LDLR-207ENST00000558013 C19orf73Q9NVV2 129 aa9.11□□□□□ -0.95
LDLR-207ENST00000558013 TMEM86BQ8N661 226 aa9.11□□□□□ -0.95
LDLR-207ENST00000558013 YAE1D1Q9NRH1 226 aa9.11□□□□□ -0.95
LDLR-207ENST00000558013 IGLV4-60A0A075B6I1 120 aa9.1□□□□□ -0.95
LDLR-207ENST00000558013 COX6CP09669 75 aa9.1□□□□□ -0.95
LDLR-207ENST00000558013 CIRBPQ14011 172 aaKnown RBP9.1□□□□□ -0.95
LDLR-207ENST00000558013 TRBV10-1A0A0K0K1A3 114 aa9.1□□□□□ -0.95
LDLR-207ENST00000558013 LST1O00453 97 aa9.1□□□□□ -0.95
LDLR-207ENST00000558013 TIMM17BO60830 172 aa9.1□□□□□ -0.95
LDLR-207ENST00000558013 UBE2WQ96B02 151 aa9.09□□□□□ -0.95
LDLR-207ENST00000558013 TOMM7Q9P0U1 55 aa9.09□□□□□ -0.95
LDLR-207ENST00000558013 UBE2L6O14933 153 aa9.09□□□□□ -0.95
LDLR-207ENST00000558013 IFITM1P13164 125 aa9.09□□□□□ -0.95
LDLR-207ENST00000558013 CSNK1G2-AS1Q8NCQ2 148 aa9.09□□□□□ -0.95
LDLR-207ENST00000558013 SMR3AQ99954 134 aa9.09□□□□□ -0.95
LDLR-207ENST00000558013 TMEM243Q9BU79 118 aa9.09□□□□□ -0.95
LDLR-207ENST00000558013 TRGV4A0A0C4DH28 118 aa9.08□□□□□ -0.96
LDLR-207ENST00000558013 CSDC2Q9Y534 153 aaKnown RBP9.08□□□□□ -0.96
LDLR-207ENST00000558013 TRRAPQ9Y4A5 3859 aa9.08□□□□□ -0.96
LDLR-207ENST00000558013 TRAV26-1A0A087WT03 109 aa9.08□□□□□ -0.96
LDLR-207ENST00000558013 M0QXV9 152 aa9.08□□□□□ -0.96
LDLR-207ENST00000558013 TMEM262E9PQX1 116 aa9.07□□□□□ -0.96
LDLR-207ENST00000558013 DEFB130BP0DP73 79 aa9.07□□□□□ -0.96
LDLR-207ENST00000558013 DEFB130AP0DP74 79 aa9.07□□□□□ -0.96
LDLR-207ENST00000558013 IGLV1-51P01701 117 aa9.07□□□□□ -0.96
LDLR-207ENST00000558013 RNF183Q96D59 192 aa9.07□□□□□ -0.96
LDLR-207ENST00000558013 CITED1Q99966 193 aa9.07□□□□□ -0.96
LDLR-207ENST00000558013 TRAV8-4A0A0B4J246 113 aa9.06□□□□□ -0.96
LDLR-207ENST00000558013 ATRQ13535 2644 aa9.06□□□□□ -0.96
LDLR-207ENST00000558013 TTC32Q5I0X7 151 aa9.06□□□□□ -0.96
LDLR-207ENST00000558013 FAM218AQ96MZ4 157 aa9.06□□□□□ -0.96
LDLR-207ENST00000558013 FAM19A3Q7Z5A8 133 aa9.05□□□□□ -0.96
LDLR-207ENST00000558013 C16orf74Q96GX8 76 aa9.05□□□□□ -0.96
LDLR-207ENST00000558013 FHL2Q14192 279 aa9.05□□□□□ -0.96
LDLR-207ENST00000558013 SPATA3Q8NHX4 192 aa9.05□□□□□ -0.96
LDLR-207ENST00000558013 CHCHD5Q9BSY4 110 aa9.05□□□□□ -0.96
LDLR-207ENST00000558013 A0A096LPF7 62 aa9.05□□□□□ -0.96
LDLR-207ENST00000558013 C5orf38Q86SI9 138 aa9.05□□□□□ -0.96
LDLR-207ENST00000558013 C11orf68Q9H3H3 251 aaKnown RBP9.05□□□□□ -0.96
LDLR-207ENST00000558013 TEX29Q8N6K0 151 aa9.04□□□□□ -0.96
LDLR-207ENST00000558013 C15orf53Q8NAA6 179 aa9.04□□□□□ -0.96
LDLR-207ENST00000558013 MIR7-3HGQ8N6C7 128 aa9.04□□□□□ -0.96
LDLR-207ENST00000558013 SNCGO76070 127 aa9.03□□□□□ -0.96
LDLR-207ENST00000558013 SHISA2Q6UWI4 295 aa9.03□□□□□ -0.96
LDLR-207ENST00000558013 LINC01600Q96MT4 127 aa9.03□□□□□ -0.96
LDLR-207ENST00000558013 TRBV6-4A0A1B0GX49 114 aa9.03□□□□□ -0.96
LDLR-207ENST00000558013 H3BT86 120 aa9.03□□□□□ -0.96
LDLR-207ENST00000558013 KRTAP10-3P60369 221 aa9.03□□□□□ -0.96
LDLR-207ENST00000558013 TRBV6-8A0A0A6YYG3 113 aa9.02□□□□□ -0.96
LDLR-207ENST00000558013 CLPSL2Q6UWE3 100 aa9.02□□□□□ -0.96
LDLR-207ENST00000558013 COX7A2LO14548 114 aa9.02□□□□□ -0.97
LDLR-207ENST00000558013 RNASE1P07998 156 aaKnown RBP9.02□□□□□ -0.97
LDLR-207ENST00000558013 LINC00337Q8N6G1 96 aa9.02□□□□□ -0.97
LDLR-207ENST00000558013 ANAPC13Q9BS18 74 aa9.02□□□□□ -0.97
LDLR-207ENST00000558013 Q9HAA7 133 aa9.02□□□□□ -0.97
LDLR-207ENST00000558013 NHLRC4P0CG21 123 aaPredicted RBP9.02□□□□□ -0.97
LDLR-207ENST00000558013 PFN2P35080 140 aa9.02□□□□□ -0.97
LDLR-207ENST00000558013 COX7B2Q8TF08 81 aa9.02□□□□□ -0.97
LDLR-207ENST00000558013 GAGE2BQ13066 116 aa9.01□□□□□ -0.97
LDLR-207ENST00000558013 GAGE2EQ4V326 116 aa9.01□□□□□ -0.97
LDLR-207ENST00000558013 OVOL2Q9BRP0 275 aa9.01□□□□□ -0.97
LDLR-207ENST00000558013 GAGE2DQ9UEU5 116 aa9.01□□□□□ -0.97
LDLR-207ENST00000558013 IGKV2-28A0A075B6P5 120 aa9.01□□□□□ -0.97
LDLR-207ENST00000558013 DEFB4AO15263 64 aa9.01□□□□□ -0.97
LDLR-207ENST00000558013 IGKV2D-28P01615 120 aa9.01□□□□□ -0.97
LDLR-207ENST00000558013 IGHV3OR16-9A0A0B4J2B5 98 aa9□□□□□ -0.97
LDLR-207ENST00000558013 LINC00158P58513 81 aa9□□□□□ -0.97
LDLR-207ENST00000558013 TEP1Q99973 2627 aaKnown RBP9□□□□□ -0.97
LDLR-207ENST00000558013 C22orf24Q9Y442 160 aa9□□□□□ -0.97
LDLR-207ENST00000558013 C16orf95Q9H693 158 aa8.99□□□□□ -0.97
LDLR-207ENST00000558013 LINC00482Q8N8I6 264 aa8.99□□□□□ -0.97
LDLR-207ENST00000558013 NSD1Q96L73 2696 aaPredicted RBP8.98□□□□□ -0.97
LDLR-207ENST00000558013 XCL1P47992 114 aa8.98□□□□□ -0.97
LDLR-207ENST00000558013 HERV-K104P63124 156 aa8.98□□□□□ -0.97
LDLR-207ENST00000558013 Q8N3U1 123 aa8.98□□□□□ -0.97
LDLR-207ENST00000558013 SND1-IT1Q9HBX3 110 aa8.98□□□□□ -0.97
LDLR-207ENST00000558013 HIVEP1P15822 2718 aa8.98□□□□□ -0.97
LDLR-207ENST00000558013 GYPEP15421 78 aa8.98□□□□□ -0.97
LDLR-207ENST00000558013 BAALC-AS2P0C853 105 aa8.97□□□□□ -0.97
LDLR-207ENST00000558013 CCL18P55774 89 aa8.97□□□□□ -0.97
LDLR-207ENST00000558013 NDUFV3P56181 108 aaKnown RBP8.97□□□□□ -0.97
LDLR-207ENST00000558013 PKD1L1Q8TDX9 2849 aa8.96□□□□□ -0.97
LDLR-207ENST00000558013 LINC00959A0A1B0GUT2 108 aa8.96□□□□□ -0.98
LDLR-207ENST00000558013 ATP5G1P05496 136 aa8.96□□□□□ -0.98
LDLR-207ENST00000558013 C9orf129Q5T035 196 aaKnown RBP8.96□□□□□ -0.98
LDLR-207ENST00000558013 A0A087WYN8 130 aa8.95□□□□□ -0.98
LDLR-207ENST00000558013 HILS1P60008 231 aa8.95□□□□□ -0.98
LDLR-207ENST00000558013 DEFB121Q5J5C9 76 aa8.95□□□□□ -0.98
LDLR-207ENST00000558013 SMIM11BQ8TCY0 68 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 128.6 ms