RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	C3orf22	Q8N5N4	141 aa		11.49	□□□□□ -0.57
SHMT2-231	ENST00000557433	TRGV2	A0A075B6R0	118 aa		11.48	□□□□□ -0.57
SHMT2-231	ENST00000557433	CCL24	O00175	119 aa		11.48	□□□□□ -0.57
SHMT2-231	ENST00000557433	GAGE2A	Q6NT46	116 aa		11.48	□□□□□ -0.57
SHMT2-231	ENST00000557433	OBSCN-AS1	Q96MR7	158 aa		11.48	□□□□□ -0.57
SHMT2-231	ENST00000557433	SPG11	Q96JI7	2443 aa		11.47	□□□□□ -0.57
SHMT2-231	ENST00000557433		A0A087WZ39	114 aa		11.47	□□□□□ -0.57
SHMT2-231	ENST00000557433	IGHV3OR16-9	A0A0B4J2B5	98 aa		11.47	□□□□□ -0.57
SHMT2-231	ENST00000557433	LINC00158	P58513	81 aa		11.47	□□□□□ -0.57
SHMT2-231	ENST00000557433	SMIM11B	Q8TCY0	68 aa		11.47	□□□□□ -0.57
SHMT2-231	ENST00000557433	USP24	Q9UPU5	2620 aa		11.47	□□□□□ -0.57
SHMT2-231	ENST00000557433	PLAC8L1	A1L4L8	177 aa		11.47	□□□□□ -0.57
SHMT2-231	ENST00000557433	TRBV6-8	A0A0A6YYG3	113 aa		11.46	□□□□□ -0.58
SHMT2-231	ENST00000557433	CCL18	P55774	89 aa		11.46	□□□□□ -0.58
SHMT2-231	ENST00000557433	LINC00526	Q96FQ7	95 aa		11.46	□□□□□ -0.58
SHMT2-231	ENST00000557433	DEFB113	Q30KQ7	82 aa		11.45	□□□□□ -0.58
SHMT2-231	ENST00000557433	SMIM20	Q8N5G0	67 aa		11.45	□□□□□ -0.58
SHMT2-231	ENST00000557433		Q9HAA7	133 aa		11.45	□□□□□ -0.58
SHMT2-231	ENST00000557433	TOMM7	Q9P0U1	55 aa		11.45	□□□□□ -0.58
SHMT2-231	ENST00000557433	CELSR1	Q9NYQ6	3014 aa		11.45	□□□□□ -0.58
SHMT2-231	ENST00000557433	TRGV4	A0A0C4DH28	118 aa		11.45	□□□□□ -0.58
SHMT2-231	ENST00000557433	HIST1H4A	P62805	103 aa	Known RBP	11.45	□□□□□ -0.58
SHMT2-231	ENST00000557433	ATOX1	O00244	68 aa		11.44	□□□□□ -0.58
SHMT2-231	ENST00000557433	C9orf153	Q5TBE3	101 aa		11.44	□□□□□ -0.58
SHMT2-231	ENST00000557433	GIG44	P09565	113 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-231	ENST00000557433	LINC01561	Q8N1V8	128 aa		11.43	□□□□□ -0.58
SHMT2-231	ENST00000557433	CR1	P17927	2039 aa		11.43	□□□□□ -0.58
SHMT2-231	ENST00000557433	LY6G6D	O95868	133 aa		11.43	□□□□□ -0.58
SHMT2-231	ENST00000557433		Q6JHZ5	121 aa		11.43	□□□□□ -0.58
SHMT2-231	ENST00000557433	C11orf44	Q8N8P7	122 aa		11.43	□□□□□ -0.58
SHMT2-231	ENST00000557433	KLK5	Q9Y337	293 aa	Predicted RBP	11.43	□□□□□ -0.58
SHMT2-231	ENST00000557433		A0A087WYN8	130 aa		11.42	□□□□□ -0.58
SHMT2-231	ENST00000557433		A0A1B0GX51	115 aa		11.42	□□□□□ -0.58
SHMT2-231	ENST00000557433	KMT2B	Q9UMN6	2715 aa	Predicted RBP	11.42	□□□□□ -0.58
SHMT2-231	ENST00000557433	COX7C	P15954	63 aa		11.41	□□□□□ -0.58
SHMT2-231	ENST00000557433	FHL2	Q14192	279 aa		11.41	□□□□□ -0.58
SHMT2-231	ENST00000557433	IGLV4-60	A0A075B6I1	120 aa		11.4	□□□□□ -0.58
SHMT2-231	ENST00000557433	LOC100131303	A0A0U1RQF7	123 aa		11.4	□□□□□ -0.58
SHMT2-231	ENST00000557433	PAX4	O43316	350 aa		11.39	□□□□□ -0.59
SHMT2-231	ENST00000557433	CSNK1G2-AS1	Q8NCQ2	148 aa		11.39	□□□□□ -0.59
SHMT2-231	ENST00000557433	PKD1L2	Q7Z442	2459 aa		11.39	□□□□□ -0.59
SHMT2-231	ENST00000557433	LINC00959	A0A1B0GUT2	108 aa		11.38	□□□□□ -0.59
SHMT2-231	ENST00000557433	DNAJC9-AS1	A6NH13	148 aa		11.38	□□□□□ -0.59
SHMT2-231	ENST00000557433	ORMDL1	Q9P0S3	153 aa		11.38	□□□□□ -0.59
SHMT2-231	ENST00000557433		A0A1W2PRX2	142 aa		11.37	□□□□□ -0.59
SHMT2-231	ENST00000557433	LECT2	O14960	151 aa		11.37	□□□□□ -0.59
SHMT2-231	ENST00000557433	CRYGA	P11844	174 aa		11.37	□□□□□ -0.59
SHMT2-231	ENST00000557433	C6orf226	Q5I0X4	101 aa		11.37	□□□□□ -0.59
SHMT2-231	ENST00000557433		Q8IZM0	81 aa		11.37	□□□□□ -0.59
SHMT2-231	ENST00000557433	LINC00167	Q96N53	147 aa		11.37	□□□□□ -0.59
SHMT2-231	ENST00000557433	C14orf132	Q9NPU4	83 aa		11.37	□□□□□ -0.59
SHMT2-231	ENST00000557433	ITPR1	Q14643	2758 aa		11.37	□□□□□ -0.59
SHMT2-231	ENST00000557433	IGKV3OR2-268	A0A0C4DH90	116 aa		11.37	□□□□□ -0.59
SHMT2-231	ENST00000557433		A0A1B0GUV1	79 aa		11.37	□□□□□ -0.59
SHMT2-231	ENST00000557433	IGLV1-51	P01701	117 aa		11.37	□□□□□ -0.59
SHMT2-231	ENST00000557433	C19orf73	Q9NVV2	129 aa		11.37	□□□□□ -0.59
SHMT2-231	ENST00000557433	RPL18A	Q02543	176 aa	Known RBP	11.36	□□□□□ -0.59
SHMT2-231	ENST00000557433	SS18	Q15532	418 aa		11.36	□□□□□ -0.59
SHMT2-231	ENST00000557433	S100A7L2	Q5SY68	101 aa		11.36	□□□□□ -0.59
SHMT2-231	ENST00000557433	PFN2	P35080	140 aa		11.35	□□□□□ -0.59
SHMT2-231	ENST00000557433	OR13C6P	Q8NH95	151 aa		11.35	□□□□□ -0.59
SHMT2-231	ENST00000557433	KIR2DL5B	Q8NHK3	375 aa		11.35	□□□□□ -0.59
SHMT2-231	ENST00000557433	C2orf48	Q96LS8	159 aa		11.35	□□□□□ -0.59
SHMT2-231	ENST00000557433	JMJD7-PLA2G4B	H0Y9G9	81 aa		11.35	□□□□□ -0.59
SHMT2-231	ENST00000557433	VPS13C	Q709C8	3753 aa		11.34	□□□□□ -0.59
SHMT2-231	ENST00000557433	NDUFC2	O95298	119 aa		11.34	□□□□□ -0.59
SHMT2-231	ENST00000557433	RPL35A	P18077	110 aa	Known RBP	11.34	□□□□□ -0.59
SHMT2-231	ENST00000557433	C16orf95	Q9H693	158 aa		11.34	□□□□□ -0.59
SHMT2-231	ENST00000557433	ANKRD17	O75179	2603 aa	Known RBP	11.33	□□□□□ -0.6
SHMT2-231	ENST00000557433	COX17	Q14061	63 aa		11.33	□□□□□ -0.6
SHMT2-231	ENST00000557433	ATP5EP2	Q5VTU8	51 aa		11.33	□□□□□ -0.6
SHMT2-231	ENST00000557433	LINC00612	Q8N6U2	182 aa		11.33	□□□□□ -0.6
SHMT2-231	ENST00000557433	LINC00846	Q9NV44	126 aa		11.33	□□□□□ -0.6
SHMT2-231	ENST00000557433	CCK	P06307	115 aa		11.32	□□□□□ -0.6
SHMT2-231	ENST00000557433	USP9Y	O00507	2555 aa	Predicted RBP	11.31	□□□□□ -0.6
SHMT2-231	ENST00000557433	KRTAP10-9	P60411	292 aa		11.31	□□□□□ -0.6
SHMT2-231	ENST00000557433	C9orf129	Q5T035	196 aa	Known RBP	11.31	□□□□□ -0.6
SHMT2-231	ENST00000557433	KRTAP1-3	Q8IUG1	177 aa		11.31	□□□□□ -0.6
SHMT2-231	ENST00000557433	USP9X	Q93008	2570 aa	Predicted RBP	11.3	□□□□□ -0.6
SHMT2-231	ENST00000557433	COL12A1	Q99715	3063 aa		11.3	□□□□□ -0.6
SHMT2-231	ENST00000557433	TMEM256-PLSCR3	K7ERE1	68 aa		11.3	□□□□□ -0.6
SHMT2-231	ENST00000557433	CHD6	Q8TD26	2715 aa		11.3	□□□□□ -0.6
SHMT2-231	ENST00000557433	SERP2	Q8N6R1	65 aa		11.29	□□□□□ -0.6
SHMT2-231	ENST00000557433	ZFYVE26	Q68DK2	2539 aa		11.29	□□□□□ -0.6
SHMT2-231	ENST00000557433	NCR3	O14931	201 aa		11.29	□□□□□ -0.6
SHMT2-231	ENST00000557433	C3orf56	Q8N813	242 aa		11.29	□□□□□ -0.6
SHMT2-231	ENST00000557433	RPS28	P62857	69 aa	Known RBP	11.28	□□□□□ -0.6
SHMT2-231	ENST00000557433	MUC7	Q8TAX7	377 aa		11.28	□□□□□ -0.6
SHMT2-231	ENST00000557433	WFDC10A	Q9H1F0	79 aa		11.28	□□□□□ -0.6
SHMT2-231	ENST00000557433	FAM208B	Q5VWN6	2430 aa		11.27	□□□□□ -0.6
SHMT2-231	ENST00000557433		J3KT08	172 aa		11.27	□□□□□ -0.61
SHMT2-231	ENST00000557433	XCL1	P47992	114 aa		11.27	□□□□□ -0.61
SHMT2-231	ENST00000557433		Q8N814	137 aa		11.27	□□□□□ -0.61
SHMT2-231	ENST00000557433	LINC01006	Q8NI28	216 aa		11.27	□□□□□ -0.61
SHMT2-231	ENST00000557433	ESM1	Q9NQ30	184 aa		11.27	□□□□□ -0.61
SHMT2-231	ENST00000557433	IGKV3D-7	A0A0C4DH55	119 aa		11.26	□□□□□ -0.61
SHMT2-231	ENST00000557433	SMIM9	A6NGZ8	99 aa		11.26	□□□□□ -0.61
SHMT2-231	ENST00000557433	RNASE1	P07998	156 aa	Known RBP	11.26	□□□□□ -0.61
SHMT2-231	ENST00000557433	GYPE	P15421	78 aa		11.26	□□□□□ -0.61
SHMT2-231	ENST00000557433	IGHV4-28	A0A0C4DH34	117 aa		11.25	□□□□□ -0.61

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