RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 MRPS36P82909 103 aaKnown RBP8.75□□□□□ -1.01
CCDC88C-211ENST00000556726 DEFB135Q30KP9 77 aa8.75□□□□□ -1.01
CCDC88C-211ENST00000556726 LINC01006Q8NI28 216 aa8.75□□□□□ -1.01
CCDC88C-211ENST00000556726 F5H768 121 aa8.75□□□□□ -1.01
CCDC88C-211ENST00000556726 RNF183Q96D59 192 aa8.75□□□□□ -1.01
CCDC88C-211ENST00000556726 A0A0B4J2C4 111 aa8.74□□□□□ -1.01
CCDC88C-211ENST00000556726 ANGP03950 147 aaKnown RBP8.74□□□□□ -1.01
CCDC88C-211ENST00000556726 KLK9Q2XQG4 91 aa8.74□□□□□ -1.01
CCDC88C-211ENST00000556726 LINC00242Q5T6M2 205 aa8.74□□□□□ -1.01
CCDC88C-211ENST00000556726 CFAP161Q6P656 301 aa8.74□□□□□ -1.01
CCDC88C-211ENST00000556726 DNAJC30Q96LL9 226 aa8.74□□□□□ -1.01
CCDC88C-211ENST00000556726 SND1-IT1Q9HBX3 110 aa8.74□□□□□ -1.01
CCDC88C-211ENST00000556726 LINC00308Q8TCZ7 52 aa8.74□□□□□ -1.01
CCDC88C-211ENST00000556726 COPS9Q8WXC6 57 aa8.74□□□□□ -1.01
CCDC88C-211ENST00000556726 TRBV10-2A0A0K0K1G8 114 aa8.74□□□□□ -1.01
CCDC88C-211ENST00000556726 BAALC-AS2P0C853 105 aa8.74□□□□□ -1.01
CCDC88C-211ENST00000556726 PYGO1Q9Y3Y4 419 aa8.73□□□□□ -1.01
CCDC88C-211ENST00000556726 UNC79Q9P2D8 2635 aa8.73□□□□□ -1.01
CCDC88C-211ENST00000556726 LINC00526Q96FQ7 95 aa8.73□□□□□ -1.01
CCDC88C-211ENST00000556726 SS18L2Q9UHA2 77 aa8.73□□□□□ -1.01
CCDC88C-211ENST00000556726 TRAV4A0A0B4J268 109 aa8.73□□□□□ -1.01
CCDC88C-211ENST00000556726 DAZ2Q13117 558 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-211ENST00000556726 DAZ4Q86SG3 579 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-211ENST00000556726 DAZ3Q9NR90 486 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-211ENST00000556726 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.72□□□□□ -1.01
CCDC88C-211ENST00000556726 MAST4O15021 2626 aa8.72□□□□□ -1.01
CCDC88C-211ENST00000556726 BRI3O95415 125 aa8.72□□□□□ -1.01
CCDC88C-211ENST00000556726 AMELXQ99217 191 aa8.72□□□□□ -1.01
CCDC88C-211ENST00000556726 C11orf72Q8NBR9 251 aa8.71□□□□□ -1.01
CCDC88C-211ENST00000556726 COX7B2Q8TF08 81 aa8.71□□□□□ -1.01
CCDC88C-211ENST00000556726 SPATA25Q9BR10 227 aa8.71□□□□□ -1.01
CCDC88C-211ENST00000556726 SLPIP03973 132 aa8.71□□□□□ -1.02
CCDC88C-211ENST00000556726 IGLV4-60A0A075B6I1 120 aa8.7□□□□□ -1.02
CCDC88C-211ENST00000556726 SS18Q15532 418 aa8.7□□□□□ -1.02
CCDC88C-211ENST00000556726 ATP6V0E2Q8NHE4 81 aa8.7□□□□□ -1.02
CCDC88C-211ENST00000556726 C16orf74Q96GX8 76 aa8.7□□□□□ -1.02
CCDC88C-211ENST00000556726 CDIP1Q9H305 208 aa8.7□□□□□ -1.02
CCDC88C-211ENST00000556726 H7C423 109 aa8.7□□□□□ -1.02
CCDC88C-211ENST00000556726 RNF152Q8N8N0 203 aa8.7□□□□□ -1.02
CCDC88C-211ENST00000556726 NTM-AS1Q6ZSK4 140 aa8.69□□□□□ -1.02
CCDC88C-211ENST00000556726 TMEM86BQ8N661 226 aa8.69□□□□□ -1.02
CCDC88C-211ENST00000556726 NOTCH1P46531 2555 aa8.69□□□□□ -1.02
CCDC88C-211ENST00000556726 IFITM1P13164 125 aa8.69□□□□□ -1.02
CCDC88C-211ENST00000556726 DAD1P61803 113 aa8.69□□□□□ -1.02
CCDC88C-211ENST00000556726 FHL3Q13643 280 aa8.69□□□□□ -1.02
CCDC88C-211ENST00000556726 MGAM2Q2M2H8 2515 aa8.68□□□□□ -1.02
CCDC88C-211ENST00000556726 SMIM1B2RUZ4 78 aa8.68□□□□□ -1.02
CCDC88C-211ENST00000556726 LECT2O14960 151 aa8.68□□□□□ -1.02
CCDC88C-211ENST00000556726 S100A7L2Q5SY68 101 aa8.68□□□□□ -1.02
CCDC88C-211ENST00000556726 Q8N2B8 174 aa8.68□□□□□ -1.02
CCDC88C-211ENST00000556726 TRBV30A0A0K0K1B3 111 aa8.67□□□□□ -1.02
CCDC88C-211ENST00000556726 NDUFA1O15239 70 aa8.67□□□□□ -1.02
CCDC88C-211ENST00000556726 CDC42SE2Q9NRR3 84 aa8.67□□□□□ -1.02
CCDC88C-211ENST00000556726 SCGB1A1P11684 91 aa8.67□□□□□ -1.02
CCDC88C-211ENST00000556726 HIST1H4AP62805 103 aaKnown RBP8.67□□□□□ -1.02
CCDC88C-211ENST00000556726 FAM222AQ5U5X8 452 aa8.67□□□□□ -1.02
CCDC88C-211ENST00000556726 NBEAL1Q6ZS30 2694 aa8.66□□□□□ -1.02
CCDC88C-211ENST00000556726 TRBV10-1A0A0K0K1A3 114 aa8.66□□□□□ -1.02
CCDC88C-211ENST00000556726 J3QKU1 62 aa8.66□□□□□ -1.02
CCDC88C-211ENST00000556726 PRR3P79522 188 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-211ENST00000556726 IGKV3D-7A0A0C4DH55 119 aa8.66□□□□□ -1.02
CCDC88C-211ENST00000556726 LINC00269Q8N2A0 174 aa8.66□□□□□ -1.02
CCDC88C-211ENST00000556726 CLUHP3Q96NS8 147 aa8.66□□□□□ -1.02
CCDC88C-211ENST00000556726 A0A096LNT2 108 aa8.65□□□□□ -1.02
CCDC88C-211ENST00000556726 TRAV25A0A0B4J276 109 aa8.65□□□□□ -1.02
CCDC88C-211ENST00000556726 TIRAPP58753 221 aa8.65□□□□□ -1.02
CCDC88C-211ENST00000556726 CMC4P56277 68 aaPredicted RBP8.65□□□□□ -1.02
CCDC88C-211ENST00000556726 TRBV6-8A0A0A6YYG3 113 aa8.65□□□□□ -1.03
CCDC88C-211ENST00000556726 C14orf132Q9NPU4 83 aa8.65□□□□□ -1.03
CCDC88C-211ENST00000556726 SPANXDQ9BXN6 97 aa8.64□□□□□ -1.03
CCDC88C-211ENST00000556726 SPANXCQ9NY87 97 aa8.64□□□□□ -1.03
CCDC88C-211ENST00000556726 TRAV13-2A0A0B4J235 113 aa8.64□□□□□ -1.03
CCDC88C-211ENST00000556726 INAFM1C9JVW0 142 aa8.63□□□□□ -1.03
CCDC88C-211ENST00000556726 LST1O00453 97 aa8.63□□□□□ -1.03
CCDC88C-211ENST00000556726 FAM236AA0A1B0GUQ0 79 aa8.63□□□□□ -1.03
CCDC88C-211ENST00000556726 FAM236BA0A1B0GV22 79 aa8.63□□□□□ -1.03
CCDC88C-211ENST00000556726 NCR3O14931 201 aa8.63□□□□□ -1.03
CCDC88C-211ENST00000556726 SOSTDC1Q6X4U4 206 aa8.63□□□□□ -1.03
CCDC88C-211ENST00000556726 COX7A2LO14548 114 aa8.63□□□□□ -1.03
CCDC88C-211ENST00000556726 OXLD1Q5BKU9 147 aa8.63□□□□□ -1.03
CCDC88C-211ENST00000556726 H3BT86 120 aa8.62□□□□□ -1.03
CCDC88C-211ENST00000556726 HERV-K104P63124 156 aa8.62□□□□□ -1.03
CCDC88C-211ENST00000556726 C9orf116Q5BN46 136 aaPredicted RBP8.62□□□□□ -1.03
CCDC88C-211ENST00000556726 BEAN1Q3B7T3 259 aa8.62□□□□□ -1.03
CCDC88C-211ENST00000556726 KLK12Q9UKR0 248 aa8.62□□□□□ -1.03
CCDC88C-211ENST00000556726 LITAFQ99732 161 aa8.61□□□□□ -1.03
CCDC88C-211ENST00000556726 LAMTOR3Q9UHA4 124 aa8.61□□□□□ -1.03
CCDC88C-211ENST00000556726 EDA2RQ9HAV5 297 aa8.61□□□□□ -1.03
CCDC88C-211ENST00000556726 Q8N3U1 123 aa8.61□□□□□ -1.03
CCDC88C-211ENST00000556726 NDUFV3P56181 108 aaKnown RBP8.6□□□□□ -1.03
CCDC88C-211ENST00000556726 LRRC75A-AS1Q8N1F1 130 aa8.6□□□□□ -1.03
CCDC88C-211ENST00000556726 CCL18P55774 89 aa8.59□□□□□ -1.03
CCDC88C-211ENST00000556726 FAM110AQ9BQ89 295 aa8.59□□□□□ -1.03
CCDC88C-211ENST00000556726 STAB1Q9NY15 2570 aa8.59□□□□□ -1.03
CCDC88C-211ENST00000556726 CCDC179H3BU77 68 aa8.59□□□□□ -1.03
CCDC88C-211ENST00000556726 PRO0255Q9UI72 69 aa8.59□□□□□ -1.03
CCDC88C-211ENST00000556726 HIVEP1P15822 2718 aa8.59□□□□□ -1.03
CCDC88C-211ENST00000556726 SMIM11BQ8TCY0 68 aa8.59□□□□□ -1.04
CCDC88C-211ENST00000556726 TRBV6-4A0A1B0GX49 114 aa8.58□□□□□ -1.04
CCDC88C-211ENST00000556726 FSHBP01225 129 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms