RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 VAMP3Q15836 100 aa3.46□□□□□ -1.86
VTI1B-202ENST00000553619 KRTAP5-11Q6L8G4 156 aa3.46□□□□□ -1.86
VTI1B-202ENST00000553619 LYPD5Q6UWN5 251 aa3.46□□□□□ -1.86
VTI1B-202ENST00000553619 NTM-AS1Q6ZSK4 140 aa3.46□□□□□ -1.86
VTI1B-202ENST00000553619 SPATA12Q7Z6I5 190 aa3.46□□□□□ -1.86
VTI1B-202ENST00000553619 OR5A1Q8NGJ0 315 aa3.46□□□□□ -1.86
VTI1B-202ENST00000553619 Q9UF83 564 aa3.46□□□□□ -1.86
VTI1B-202ENST00000553619 MGAM2Q2M2H8 2515 aa3.46□□□□□ -1.86
VTI1B-202ENST00000553619 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.45□□□□□ -1.86
VTI1B-202ENST00000553619 TRAV9-2A0A087WT02 112 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 A0A087WX48 190 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 A0A096LNJ9 63 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 IGKV2-29A2NJV5 120 aaPredicted RBP3.45□□□□□ -1.86
VTI1B-202ENST00000553619 A4D1N5 150 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 IGIPA6NJ69 53 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 C3orf79P0CE67 100 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 FGF6P10767 208 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 RPL39P62891 51 aaKnown RBP3.45□□□□□ -1.86
VTI1B-202ENST00000553619 PMVKQ15126 192 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 C5orf47Q569G3 176 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 LGALS9CQ6DKI2 356 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.45□□□□□ -1.86
VTI1B-202ENST00000553619 TEX43Q6ZNM6 134 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 DEFB104AQ8WTQ1 72 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 SIGMAR1Q99720 223 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 UBE2D4Q9Y2X8 147 aa3.45□□□□□ -1.86
VTI1B-202ENST00000553619 VWFP04275 2813 aa3.44□□□□□ -1.86
VTI1B-202ENST00000553619 IFITM10A6NMD0 228 aa3.44□□□□□ -1.86
VTI1B-202ENST00000553619 GAGE6Q13070 117 aa3.44□□□□□ -1.86
VTI1B-202ENST00000553619 ESRGQ1W209 222 aa3.44□□□□□ -1.86
VTI1B-202ENST00000553619 BAALCQ8WXS3 180 aa3.44□□□□□ -1.86
VTI1B-202ENST00000553619 CDC42SE2Q9NRR3 84 aa3.44□□□□□ -1.86
VTI1B-202ENST00000553619 IGLV4-3A0A075B6K6 122 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 IGLV5-39A0A0G2JS06 123 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 F8VRH5 84 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 C3orf84H3BNL1 204 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 DPM2O94777 84 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 IGKCP01834 107 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 ANGP03950 147 aaKnown RBP3.43□□□□□ -1.86
VTI1B-202ENST00000553619 PLNP26678 52 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 CKS1BP61024 79 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 SS18Q15532 418 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 LINC01545Q5VT33 79 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 LINC00173Q6ZV60 143 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 GTF2H5Q6ZYL4 71 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 UBE2DNLQ8IWF7 75 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 C10orf126Q8N4M7 172 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 MUC7Q8TAX7 377 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 AMELXQ99217 191 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 GEMIN7Q9H840 131 aaKnown RBP3.43□□□□□ -1.86
VTI1B-202ENST00000553619 UQCR10Q9UDW1 63 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 APLNQ9ULZ1 77 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 MRPS16Q9Y3D3 137 aaKnown RBP3.43□□□□□ -1.86
VTI1B-202ENST00000553619 CMYA5Q8N3K9 4069 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 NOTCH1P46531 2555 aa3.43□□□□□ -1.86
VTI1B-202ENST00000553619 TRAV8-4A0A0B4J246 113 aa3.42□□□□□ -1.86
VTI1B-202ENST00000553619 TINCRA0A1B0GVN0 87 aa3.42□□□□□ -1.86
VTI1B-202ENST00000553619 F8WDY8 70 aa3.42□□□□□ -1.86
VTI1B-202ENST00000553619 H3BRM9 83 aa3.42□□□□□ -1.86
VTI1B-202ENST00000553619 SIVA1O15304 175 aa3.42□□□□□ -1.86
VTI1B-202ENST00000553619 TSPAN13O95857 204 aa3.42□□□□□ -1.86
VTI1B-202ENST00000553619 CRPP02741 224 aa3.42□□□□□ -1.86
VTI1B-202ENST00000553619 HERVK_113P61574 105 aa3.42□□□□□ -1.86
VTI1B-202ENST00000553619 HERVK_113P63121 156 aa3.42□□□□□ -1.86
VTI1B-202ENST00000553619 RPL24P83731 157 aaKnown RBP3.42□□□□□ -1.86
VTI1B-202ENST00000553619 FAM19A3Q7Z5A8 133 aa3.42□□□□□ -1.86
VTI1B-202ENST00000553619 UPK3BQ9BT76 320 aa3.42□□□□□ -1.86
VTI1B-202ENST00000553619 ANK2Q01484 3957 aa3.42□□□□□ -1.86
VTI1B-202ENST00000553619 IGLV4-60A0A075B6I1 120 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 TRAV8-3A0A0A6YYJ7 113 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 IGHV3-30P01768 117 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 IGHV3-33P01772 117 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 DNAH10OSP0CZ25 163 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 IGHV3-30-3P0DP02 117 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 IGHV3-30-5P0DP03 117 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 HERV-K104P63124 156 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 REG3AQ06141 175 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 MIAQ16674 131 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 MPV17L2Q567V2 206 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 LINC01556Q5JQF7 62 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 Q6ZUT4 128 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 NFE4Q86UQ8 179 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 RMI2Q96E14 147 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 OPRPNQ99935 248 aaPredicted RBP3.41□□□□□ -1.86
VTI1B-202ENST00000553619 VAMP8Q9BV40 100 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 Q9H8V8 135 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 MRPL35Q9NZE8 188 aaKnown RBP3.41□□□□□ -1.86
VTI1B-202ENST00000553619 LINC00588Q9Y4M8 146 aa3.41□□□□□ -1.86
VTI1B-202ENST00000553619 DNAH3Q8TD57 4116 aa3.4□□□□□ -1.86
VTI1B-202ENST00000553619 TRAV13-1A0A0B4J241 112 aa3.4□□□□□ -1.87
VTI1B-202ENST00000553619 IGKV3OR2-268A0A0C4DH90 116 aa3.4□□□□□ -1.87
VTI1B-202ENST00000553619 LINC00959A0A1B0GUT2 108 aa3.4□□□□□ -1.87
VTI1B-202ENST00000553619 C11orf86A6NJI1 115 aa3.4□□□□□ -1.87
VTI1B-202ENST00000553619 IGLC3P0DOY3 106 aa3.4□□□□□ -1.87
VTI1B-202ENST00000553619 UBE2D1P51668 147 aa3.4□□□□□ -1.87
VTI1B-202ENST00000553619 HNRNPA3P51991 378 aaKnown RBP3.4□□□□□ -1.87
VTI1B-202ENST00000553619 TTC32Q5I0X7 151 aa3.4□□□□□ -1.87
VTI1B-202ENST00000553619 TMEM170BQ5T4T1 132 aa3.4□□□□□ -1.87
VTI1B-202ENST00000553619 LINC01561Q8N1V8 128 aa3.4□□□□□ -1.87
VTI1B-202ENST00000553619 LINC00269Q8N2A0 174 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms