RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 NCR3O14931 201 aa1.9□□□□□ -2.11
LIMA1-210ENST00000552045 UQCRHP07919 91 aa1.9□□□□□ -2.11
LIMA1-210ENST00000552045 DEFB121Q5J5C9 76 aa1.9□□□□□ -2.11
LIMA1-210ENST00000552045 COMMD3Q9UBI1 195 aa1.9□□□□□ -2.11
LIMA1-210ENST00000552045 CMYA5Q8N3K9 4069 aa1.9□□□□□ -2.11
LIMA1-210ENST00000552045 ABCA1O95477 2261 aa1.89□□□□□ -2.11
LIMA1-210ENST00000552045 ROS1P08922 2347 aa1.89□□□□□ -2.11
LIMA1-210ENST00000552045 A6NN06 94 aa1.89□□□□□ -2.11
LIMA1-210ENST00000552045 C10orf142B7Z368 130 aa1.89□□□□□ -2.11
LIMA1-210ENST00000552045 SNRNP200O75643 2136 aaKnown RBP1.89□□□□□ -2.11
LIMA1-210ENST00000552045 MPC1LP0DKB6 136 aa1.89□□□□□ -2.11
LIMA1-210ENST00000552045 PDE6GP18545 87 aa1.89□□□□□ -2.11
LIMA1-210ENST00000552045 KDELR1P24390 212 aa1.89□□□□□ -2.11
LIMA1-210ENST00000552045 SBSPONQ8IVN8 264 aa1.89□□□□□ -2.11
LIMA1-210ENST00000552045 OR8J3Q8NGG0 315 aa1.89□□□□□ -2.11
LIMA1-210ENST00000552045 SMIM3Q9BZL3 60 aa1.89□□□□□ -2.11
LIMA1-210ENST00000552045 SLC35B3Q9H1N7 401 aa1.89□□□□□ -2.11
LIMA1-210ENST00000552045 COPZ2Q9P299 210 aa1.89□□□□□ -2.11
LIMA1-210ENST00000552045 CDC42EP2O14613 210 aa1.88□□□□□ -2.11
LIMA1-210ENST00000552045 EVI2AP22794 236 aa1.88□□□□□ -2.11
LIMA1-210ENST00000552045 OCIAD2Q56VL3 154 aa1.88□□□□□ -2.11
LIMA1-210ENST00000552045 C3orf62Q6ZUJ4 267 aa1.88□□□□□ -2.11
LIMA1-210ENST00000552045 CACNA1CQ13936 2221 aa1.87□□□□□ -2.11
LIMA1-210ENST00000552045 DMBT1Q9UGM3 2413 aaPredicted RBP1.87□□□□□ -2.11
LIMA1-210ENST00000552045 PLXNA2O75051 1894 aa1.87□□□□□ -2.11
LIMA1-210ENST00000552045 TNFP01375 233 aa1.87□□□□□ -2.11
LIMA1-210ENST00000552045 EFNA4P52798 201 aa1.87□□□□□ -2.11
LIMA1-210ENST00000552045 KRTAP21-2Q3LI59 83 aa1.87□□□□□ -2.11
LIMA1-210ENST00000552045 GLYATL3Q5SZD4 288 aa1.87□□□□□ -2.11
LIMA1-210ENST00000552045 CSAG1Q6PB30 78 aa1.87□□□□□ -2.11
LIMA1-210ENST00000552045 OR10AC1Q8NH08 325 aa1.87□□□□□ -2.11
LIMA1-210ENST00000552045 BOKQ9UMX3 212 aaPredicted RBP1.87□□□□□ -2.11
LIMA1-210ENST00000552045 NINQ8N4C6 2090 aa1.86□□□□□ -2.11
LIMA1-210ENST00000552045 IGHV3-30P01768 117 aa1.86□□□□□ -2.11
LIMA1-210ENST00000552045 IGHV3-30-5P0DP03 117 aa1.86□□□□□ -2.11
LIMA1-210ENST00000552045 PLGLB1Q02325 96 aa1.86□□□□□ -2.11
LIMA1-210ENST00000552045 MMGT1Q8N4V1 131 aa1.86□□□□□ -2.11
LIMA1-210ENST00000552045 CADP27708 2225 aa1.86□□□□□ -2.11
LIMA1-210ENST00000552045 IGLC6P0CF74 106 aa1.85□□□□□ -2.11
LIMA1-210ENST00000552045 ADCYAP1P18509 176 aa1.85□□□□□ -2.11
LIMA1-210ENST00000552045 IDO2Q6ZQW0 420 aa1.85□□□□□ -2.11
LIMA1-210ENST00000552045 M0R2Z0 102 aa1.84□□□□□ -2.11
LIMA1-210ENST00000552045 FXYD4P59646 89 aa1.84□□□□□ -2.11
LIMA1-210ENST00000552045 CLLU1Q5K131 121 aa1.84□□□□□ -2.11
LIMA1-210ENST00000552045 HECTD4Q9Y4D8 3996 aa1.83□□□□□ -2.12
LIMA1-210ENST00000552045 FRAS1Q86XX4 4008 aa1.83□□□□□ -2.12
LIMA1-210ENST00000552045 PLCE1Q9P212 2302 aa1.83□□□□□ -2.12
LIMA1-210ENST00000552045 RBP4P02753 201 aa1.83□□□□□ -2.12
LIMA1-210ENST00000552045 GYPBP06028 91 aa1.83□□□□□ -2.12
LIMA1-210ENST00000552045 TSPAN19P0C672 248 aa1.83□□□□□ -2.12
LIMA1-210ENST00000552045 COX4I1P13073 169 aa1.83□□□□□ -2.12
LIMA1-210ENST00000552045 RPL37AP61513 92 aaKnown RBP1.83□□□□□ -2.12
LIMA1-210ENST00000552045 NCS1P62166 190 aa1.83□□□□□ -2.12
LIMA1-210ENST00000552045 SARNPP82979 210 aaKnown RBP1.83□□□□□ -2.12
LIMA1-210ENST00000552045 CRCT1Q9UGL9 99 aa1.83□□□□□ -2.12
LIMA1-210ENST00000552045 FAT4Q6V0I7 4981 aa1.83□□□□□ -2.12
LIMA1-210ENST00000552045 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.82□□□□□ -2.12
LIMA1-210ENST00000552045 TMEM30CPA0ZSE6 113 aa1.82□□□□□ -2.12
LIMA1-210ENST00000552045 J3QR89 54 aa1.82□□□□□ -2.12
LIMA1-210ENST00000552045 K7EIL1 84 aa1.82□□□□□ -2.12
LIMA1-210ENST00000552045 LINC00694P0DN24 101 aa1.82□□□□□ -2.12
LIMA1-210ENST00000552045 UBA52P62987 128 aaKnown RBP1.82□□□□□ -2.12
LIMA1-210ENST00000552045 RHOHQ15669 191 aa1.82□□□□□ -2.12
LIMA1-210ENST00000552045 LYSTQ99698 3801 aa1.82□□□□□ -2.12
LIMA1-210ENST00000552045 LSM2Q9Y333 95 aaKnown RBP1.82□□□□□ -2.12
LIMA1-210ENST00000552045 NUPR2A6NF83 97 aa1.81□□□□□ -2.12
LIMA1-210ENST00000552045 YPEL1O60688 119 aa1.81□□□□□ -2.12
LIMA1-210ENST00000552045 IGF2P01344 180 aa1.81□□□□□ -2.12
LIMA1-210ENST00000552045 HMGN1P05114 100 aa1.81□□□□□ -2.12
LIMA1-210ENST00000552045 LINC00575Q6W349 94 aa1.81□□□□□ -2.12
LIMA1-210ENST00000552045 HRNRQ86YZ3 2850 aaPredicted RBP1.81□□□□□ -2.12
LIMA1-210ENST00000552045 RNF213Q63HN8 5207 aa1.81□□□□□ -2.12
LIMA1-210ENST00000552045 HMCN2Q8NDA2 5059 aa1.81□□□□□ -2.12
LIMA1-210ENST00000552045 CITO14578 2027 aa1.8□□□□□ -2.12
LIMA1-210ENST00000552045 DNAH9Q9NYC9 4486 aa1.8□□□□□ -2.12
LIMA1-210ENST00000552045 A0A096LNT2 108 aa1.8□□□□□ -2.12
LIMA1-210ENST00000552045 LY6G6CO95867 125 aa1.8□□□□□ -2.12
LIMA1-210ENST00000552045 IGKCP01834 107 aa1.8□□□□□ -2.12
LIMA1-210ENST00000552045 IL7P13232 177 aa1.8□□□□□ -2.12
LIMA1-210ENST00000552045 LYPD5Q6UWN5 251 aa1.8□□□□□ -2.12
LIMA1-210ENST00000552045 CTAGE3PQ8IX95 158 aa1.8□□□□□ -2.12
LIMA1-210ENST00000552045 PFDN5Q99471 154 aa1.8□□□□□ -2.12
LIMA1-210ENST00000552045 MRPL36Q9P0J6 103 aaKnown RBP1.8□□□□□ -2.12
LIMA1-210ENST00000552045 MYH7P12883 1935 aa1.79□□□□□ -2.12
LIMA1-210ENST00000552045 FSIP2Q5CZC0 6907 aa1.79□□□□□ -2.12
LIMA1-210ENST00000552045 FAM236AA0A1B0GUQ0 79 aa1.79□□□□□ -2.12
LIMA1-210ENST00000552045 FAM236BA0A1B0GV22 79 aa1.79□□□□□ -2.12
LIMA1-210ENST00000552045 DEFB108AA8MXU0 73 aa1.79□□□□□ -2.12
LIMA1-210ENST00000552045 TPST1O60507 370 aa1.79□□□□□ -2.12
LIMA1-210ENST00000552045 NCR2O95944 276 aa1.79□□□□□ -2.12
LIMA1-210ENST00000552045 SNX29P2Q8IUI4 249 aa1.79□□□□□ -2.12
LIMA1-210ENST00000552045 ATP6V0E2Q8NHE4 81 aa1.79□□□□□ -2.12
LIMA1-210ENST00000552045 WNK2Q9Y3S1 2297 aa1.79□□□□□ -2.12
LIMA1-210ENST00000552045 A0A0G2JMM0 328 aa1.78□□□□□ -2.12
LIMA1-210ENST00000552045 FAM92AA1XBS5 289 aa1.78□□□□□ -2.12
LIMA1-210ENST00000552045 DCDP81605 110 aaKnown RBP1.78□□□□□ -2.12
LIMA1-210ENST00000552045 SLC25A26Q70HW3 274 aa1.78□□□□□ -2.12
LIMA1-210ENST00000552045 FAM107BQ9H098 131 aa1.78□□□□□ -2.12
LIMA1-210ENST00000552045 NOP16Q9Y3C1 178 aaKnown RBP1.78□□□□□ -2.12
LIMA1-210ENST00000552045 M0R2P5 195 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms