RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 J3QQQ9 107 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 M0R2Z0 102 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 M0R3E3 92 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 DLEU1O43261 78 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 SPINK4O60575 86 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 LEPROTL1O95214 131 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 IGKV2D-40P01614 121 aaPredicted RBP0.96□□□□□ -2.26
LIMA1-209ENST00000552008 COX6CP09669 75 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 ZNF705BP0CI00 300 aaPredicted RBP0.96□□□□□ -2.26
LIMA1-209ENST00000552008 HTN3P15516 51 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 ZNF25P17030 456 aaPredicted RBP0.96□□□□□ -2.26
LIMA1-209ENST00000552008 PLNP26678 52 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 PI4KAP42356 2102 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 CRYBA4P53673 196 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 Q0VG73 95 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 SS18Q15532 418 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 SPINK13Q1W4C9 94 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 FAM74A4Q5TZK3 123 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 LINC01545Q5VT33 79 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 LGALS9CQ6DKI2 356 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 LYZL1Q6UWQ5 148 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 C2orf91Q6ZV80 131 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 FAM19A5Q7Z5A7 132 aaPredicted RBP0.96□□□□□ -2.26
LIMA1-209ENST00000552008 Q86TA4 180 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 DEFB125Q8N687 156 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 DAND5Q8N907 189 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 ATP6V0E2Q8NHE4 81 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 DCANP1Q8TF63 244 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 DPH3Q96FX2 82 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 FAM167A-AS1Q96KT0 104 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 PRELID3AQ96N28 172 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 SCGB3A1Q96QR1 104 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 DERL1Q9BUN8 251 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 RNASE7Q9H1E1 156 aaKnown RBP0.96□□□□□ -2.26
LIMA1-209ENST00000552008 NOP10Q9NPE3 64 aaKnown RBP0.96□□□□□ -2.26
LIMA1-209ENST00000552008 VCANP13611 3396 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 CACNA1AO00555 2505 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 ARHGAP32A7KAX9 2087 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 HEATR5BQ9P2D3 2071 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 ANKRD11Q6UB99 2663 aaPredicted RBP0.96□□□□□ -2.26
LIMA1-209ENST00000552008 KNTC1P50748 2209 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 GOLGA4Q13439 2230 aaKnown RBP0.96□□□□□ -2.26
LIMA1-209ENST00000552008 PTPRBP23467 1997 aa0.96□□□□□ -2.26
LIMA1-209ENST00000552008 USP34Q70CQ2 3546 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 NCOR2Q9Y618 2525 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 LAMA1P25391 3075 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 AHCTF1Q8WYP5 2266 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 MDC1Q14676 2089 aaKnown RBP0.95□□□□□ -2.26
LIMA1-209ENST00000552008 CPAMD8Q8IZJ3 1885 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 WDFY4Q6ZS81 3184 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 UBR5O95071 2799 aaPredicted RBP0.95□□□□□ -2.26
LIMA1-209ENST00000552008 CHD3Q12873 2000 aaKnown RBP0.95□□□□□ -2.26
LIMA1-209ENST00000552008 TRBV20-1A0A075B6N2 111 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 TRAV12-2A0A075B6T6 113 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 DEFB131BA0A096LNP1 70 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 F8W1H4 67 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 H3BVH4 76 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 GNRH2O43555 120 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 HBDP02042 147 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 TRGC2P03986 189 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 ACYP1P07311 99 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 FABP2P12104 132 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 XCL1P47992 114 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 FXYD7P58549 80 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 CKS1BP61024 79 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 TMEM258P61165 79 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 GNG5P63218 68 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 DEFB135Q30KP9 77 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 S100A7L2Q5SY68 101 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 Q8N8P6 123 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 NUP35Q8NFH5 326 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 OR13C6PQ8NH95 151 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 Q8TAT8 98 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 ZC2HC1AQ96GY0 325 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 SIGMAR1Q99720 223 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 TMEM126AQ9H061 195 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 C11orf68Q9H3H3 251 aaKnown RBP0.95□□□□□ -2.26
LIMA1-209ENST00000552008 MRPL36Q9P0J6 103 aaKnown RBP0.95□□□□□ -2.26
LIMA1-209ENST00000552008 ZNF462Q96JM2 2506 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 CACNA1BQ00975 2339 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 ACACBO00763 2458 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 MUC3AQ02505 3323 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 ITPR1Q14643 2758 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 PIEZO2Q9H5I5 2752 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 SPTA1P02549 2419 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 CEP250Q9BV73 2442 aa0.95□□□□□ -2.26
LIMA1-209ENST00000552008 DSCAMO60469 2012 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 ACACAQ13085 2346 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 KNL1Q8NG31 2342 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 MYO15AQ9UKN7 3530 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 TRBV6-8A0A0A6YYG3 113 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 MUC21A0A0G2JKD1 596 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 TRBV6-5A0A0K0K1A5 114 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 TRBV27A0A0K0K1C4 114 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 MUC21A0A140T8X8 626 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 MYMXA0A1B0GTQ4 84 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 D6R8Y8 96 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 HIST1H2BKO60814 126 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 DPM2O94777 84 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 ANGP03950 147 aaKnown RBP0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms