RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 SPAG11BQ08648 103 aa10.89□□□□□ -0.67
CUX1-214ENST00000550008 OXLD1Q5BKU9 147 aa10.89□□□□□ -0.67
CUX1-214ENST00000550008 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.89□□□□□ -0.67
CUX1-214ENST00000550008 PRB2P02812 416 aaPredicted RBP10.88□□□□□ -0.67
CUX1-214ENST00000550008 INAFM2P0DMQ5 153 aa10.88□□□□□ -0.67
CUX1-214ENST00000550008 NKAPP1Q8N9T2 125 aa10.88□□□□□ -0.67
CUX1-214ENST00000550008 TRBV6-8A0A0A6YYG3 113 aa10.88□□□□□ -0.67
CUX1-214ENST00000550008 OVOL2Q9BRP0 275 aa10.88□□□□□ -0.67
CUX1-214ENST00000550008 UBE2D4Q9Y2X8 147 aa10.88□□□□□ -0.67
CUX1-214ENST00000550008 FAM236AA0A1B0GUQ0 79 aa10.88□□□□□ -0.67
CUX1-214ENST00000550008 FAM236BA0A1B0GV22 79 aa10.88□□□□□ -0.67
CUX1-214ENST00000550008 NCR3O14931 201 aa10.88□□□□□ -0.67
CUX1-214ENST00000550008 LRBAP50851 2863 aa10.88□□□□□ -0.67
CUX1-214ENST00000550008 MUC3AQ02505 3323 aa10.87□□□□□ -0.67
CUX1-214ENST00000550008 RBMY1FQ15415 496 aaKnown RBP10.87□□□□□ -0.67
CUX1-214ENST00000550008 HIGD2BQ4VC39 106 aa10.87□□□□□ -0.67
CUX1-214ENST00000550008 LECT2O14960 151 aa10.87□□□□□ -0.67
CUX1-214ENST00000550008 TSPEAR-AS2P59090 65 aa10.86□□□□□ -0.67
CUX1-214ENST00000550008 Q9UF83 564 aa10.86□□□□□ -0.67
CUX1-214ENST00000550008 TMEM126AQ9H061 195 aa10.86□□□□□ -0.67
CUX1-214ENST00000550008 BRI3O95415 125 aa10.86□□□□□ -0.67
CUX1-214ENST00000550008 LINC00694P0DN24 101 aa10.86□□□□□ -0.67
CUX1-214ENST00000550008 RPL32P62910 135 aaKnown RBP10.86□□□□□ -0.67
CUX1-214ENST00000550008 TRBV6-4A0A1B0GX49 114 aa10.85□□□□□ -0.67
CUX1-214ENST00000550008 PYGO1Q9Y3Y4 419 aa10.85□□□□□ -0.67
CUX1-214ENST00000550008 IGLV4-69A0A075B6H9 119 aa10.84□□□□□ -0.67
CUX1-214ENST00000550008 IGHV4-28A0A0C4DH34 117 aa10.84□□□□□ -0.67
CUX1-214ENST00000550008 REG3AQ06141 175 aa10.84□□□□□ -0.67
CUX1-214ENST00000550008 NDUFV3P56181 108 aaKnown RBP10.84□□□□□ -0.67
CUX1-214ENST00000550008 HAMPP81172 84 aa10.84□□□□□ -0.67
CUX1-214ENST00000550008 SPANXDQ9BXN6 97 aa10.84□□□□□ -0.67
CUX1-214ENST00000550008 GHRHP01286 108 aa10.84□□□□□ -0.67
CUX1-214ENST00000550008 POM121L12Q8N7R1 296 aa10.84□□□□□ -0.67
CUX1-214ENST00000550008 J3KT08 172 aa10.83□□□□□ -0.68
CUX1-214ENST00000550008 DEFB105AQ8NG35 78 aa10.83□□□□□ -0.68
CUX1-214ENST00000550008 LINC00308Q8TCZ7 52 aa10.83□□□□□ -0.68
CUX1-214ENST00000550008 CHCHD10Q8WYQ3 142 aaPredicted RBP10.83□□□□□ -0.68
CUX1-214ENST00000550008 TRIAP1O43715 76 aa10.83□□□□□ -0.68
CUX1-214ENST00000550008 IGLV1-51P01701 117 aa10.83□□□□□ -0.68
CUX1-214ENST00000550008 RPL18AQ02543 176 aaKnown RBP10.83□□□□□ -0.68
CUX1-214ENST00000550008 KIF25-AS1Q9Y6Z4 181 aa10.83□□□□□ -0.68
CUX1-214ENST00000550008 WDFY3Q8IZQ1 3526 aa10.82□□□□□ -0.68
CUX1-214ENST00000550008 TEX49A0A1B0GTD5 131 aa10.81□□□□□ -0.68
CUX1-214ENST00000550008 TRBV10-2A0A0K0K1G8 114 aa10.8□□□□□ -0.68
CUX1-214ENST00000550008 UBE2D1P51668 147 aa10.8□□□□□ -0.68
CUX1-214ENST00000550008 XAGE1AQ9HD64 81 aa10.8□□□□□ -0.68
CUX1-214ENST00000550008 UBE2D3P61077 147 aa10.8□□□□□ -0.68
CUX1-214ENST00000550008 UBE2D2P62837 147 aa10.8□□□□□ -0.68
CUX1-214ENST00000550008 LINC00242Q5T6M2 205 aa10.8□□□□□ -0.68
CUX1-214ENST00000550008 A0A0B4J2C4 111 aa10.79□□□□□ -0.68
CUX1-214ENST00000550008 TIRAPP58753 221 aa10.79□□□□□ -0.68
CUX1-214ENST00000550008 LYRM9A8MSI8 78 aa10.79□□□□□ -0.68
CUX1-214ENST00000550008 CCL18P55774 89 aa10.79□□□□□ -0.68
CUX1-214ENST00000550008 LINC00315P59091 139 aa10.79□□□□□ -0.68
CUX1-214ENST00000550008 CHCHD7Q9BUK0 85 aa10.79□□□□□ -0.68
CUX1-214ENST00000550008 ORMDL1Q9P0S3 153 aa10.79□□□□□ -0.68
CUX1-214ENST00000550008 MRPS36P82909 103 aaKnown RBP10.79□□□□□ -0.68
CUX1-214ENST00000550008 SMIM9A6NGZ8 99 aa10.78□□□□□ -0.68
CUX1-214ENST00000550008 COX6A2Q02221 97 aa10.78□□□□□ -0.68
CUX1-214ENST00000550008 C11orf45Q8TAV5 145 aa10.78□□□□□ -0.68
CUX1-214ENST00000550008 NDUFA1O15239 70 aa10.78□□□□□ -0.68
CUX1-214ENST00000550008 SLPIP03973 132 aa10.77□□□□□ -0.68
CUX1-214ENST00000550008 CDC42SE2Q9NRR3 84 aa10.77□□□□□ -0.68
CUX1-214ENST00000550008 IGLV4-60A0A075B6I1 120 aa10.77□□□□□ -0.69
CUX1-214ENST00000550008 RETNQ9HD89 108 aa10.77□□□□□ -0.69
CUX1-214ENST00000550008 SPANXCQ9NY87 97 aa10.77□□□□□ -0.69
CUX1-214ENST00000550008 TEX15Q9BXT5 2789 aa10.77□□□□□ -0.69
CUX1-214ENST00000550008 IGHV4-30-4P0DP06 118 aa10.76□□□□□ -0.69
CUX1-214ENST00000550008 SVIPQ8NHG7 77 aa10.76□□□□□ -0.69
CUX1-214ENST00000550008 SPATA25Q9BR10 227 aa10.76□□□□□ -0.69
CUX1-214ENST00000550008 IGKV3D-7A0A0C4DH55 119 aa10.76□□□□□ -0.69
CUX1-214ENST00000550008 DEFB131BA0A096LNP1 70 aa10.76□□□□□ -0.69
CUX1-214ENST00000550008 A0A1B0GX51 115 aa10.75□□□□□ -0.69
CUX1-214ENST00000550008 H0YGX0 51 aa10.75□□□□□ -0.69
CUX1-214ENST00000550008 ACYP1P07311 99 aa10.75□□□□□ -0.69
CUX1-214ENST00000550008 UBL5Q9BZL1 73 aa10.75□□□□□ -0.69
CUX1-214ENST00000550008 XGP55808 180 aa10.75□□□□□ -0.69
CUX1-214ENST00000550008 UFSP1Q6NVU6 142 aa10.75□□□□□ -0.69
CUX1-214ENST00000550008 LINC00959A0A1B0GUT2 108 aa10.74□□□□□ -0.69
CUX1-214ENST00000550008 DSCR8Q96T75 97 aa10.74□□□□□ -0.69
CUX1-214ENST00000550008 ITPR1Q14643 2758 aa10.74□□□□□ -0.69
CUX1-214ENST00000550008 RBM3P98179 157 aaKnown RBP10.74□□□□□ -0.69
CUX1-214ENST00000550008 ADAMTSL4-AS1Q5T5F5 129 aa10.74□□□□□ -0.69
CUX1-214ENST00000550008 MIFP14174 115 aa10.74□□□□□ -0.69
CUX1-214ENST00000550008 FAM19A4Q96LR4 140 aa10.73□□□□□ -0.69
CUX1-214ENST00000550008 ATOX1O00244 68 aa10.73□□□□□ -0.69
CUX1-214ENST00000550008 C14orf132Q9NPU4 83 aa10.73□□□□□ -0.69
CUX1-214ENST00000550008 F8WEM9 126 aa10.72□□□□□ -0.69
CUX1-214ENST00000550008 H3BT86 120 aa10.72□□□□□ -0.69
CUX1-214ENST00000550008 CCDC179H3BU77 68 aa10.71□□□□□ -0.69
CUX1-214ENST00000550008 C11orf72Q8NBR9 251 aa10.71□□□□□ -0.69
CUX1-214ENST00000550008 RMI2Q96E14 147 aa10.71□□□□□ -0.69
CUX1-214ENST00000550008 SMIM1B2RUZ4 78 aa10.71□□□□□ -0.69
CUX1-214ENST00000550008 UBR5O95071 2799 aaPredicted RBP10.71□□□□□ -0.7
CUX1-214ENST00000550008 C5orf47Q569G3 176 aa10.7□□□□□ -0.7
CUX1-214ENST00000550008 KPRPQ5T749 579 aaPredicted RBP10.7□□□□□ -0.7
CUX1-214ENST00000550008 CXCL5P42830 114 aa10.7□□□□□ -0.7
CUX1-214ENST00000550008 FHL2Q14192 279 aa10.7□□□□□ -0.7
CUX1-214ENST00000550008 UBE2BP63146 152 aa10.7□□□□□ -0.7
CUX1-214ENST00000550008 BEAN1Q3B7T3 259 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 178.3 ms