RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 PSENENQ9NZ42 101 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 UQCR10Q9UDW1 63 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 CACFD1Q9UGQ2 172 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 SPCS1Q9Y6A9 102 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 URB1O60287 2271 aaKnown RBP0.32□□□□□ -2.36
VPS29-205ENST00000548539 SUPT6HQ7KZ85 1726 aaKnown RBP0.32□□□□□ -2.36
VPS29-205ENST00000548539 MYO5CQ9NQX4 1742 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 NWD2Q9ULI1 1742 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 LAMB1P07942 1786 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 NRKQ7Z2Y5 1582 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 THOC2Q8NI27 1593 aaKnown RBP0.32□□□□□ -2.36
VPS29-205ENST00000548539 BAZ1AQ9NRL2 1556 aaPredicted RBP0.32□□□□□ -2.36
VPS29-205ENST00000548539 GOLGA4Q13439 2230 aaKnown RBP0.32□□□□□ -2.36
VPS29-205ENST00000548539 AHCTF1Q8WYP5 2266 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 CLIP1P30622 1438 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 DAPK1P53355 1430 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 PLCE1Q9P212 2302 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 FANCAO15360 1455 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 NLRP1Q9C000 1473 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 MLH3Q9UHC1 1453 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 TRAV13-2A0A0B4J235 113 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 UBE2L5PA0A1B0GUS4 154 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 NAP1L6A6NFF2 107 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 TMEM14DPA8MWL7 114 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 IQCF6A8MYZ5 107 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 CHKB-CPT1BH3BT56 60 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 K7EMI3 77 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 M0R3E3 92 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 GCHFRP30047 84 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 GNGT1P63211 74 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 UBE2L3P68036 154 aaKnown RBP0.31□□□□□ -2.36
VPS29-205ENST00000548539 C10orf128Q5T292 105 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 CFAP126Q5VTH2 177 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 C18orf32Q8TCD1 76 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 AQP10Q96PS8 301 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 S100A13Q99584 98 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 NXT2Q9NPJ8 142 aaKnown RBP0.31□□□□□ -2.36
VPS29-205ENST00000548539 MANBALQ9NQG1 85 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 AP4S1Q9Y587 144 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 HILPDAQ9Y5L2 63 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 PRDM15P57071 1507 aaPredicted RBP0.31□□□□□ -2.36
VPS29-205ENST00000548539 HMGXB3Q12766 1538 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 ERICH3Q5RHP9 1530 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 DOPEY2Q9Y3R5 2298 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 GLI2P10070 1586 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 ARHGEF5Q12774 1597 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 LAMC3Q9Y6N6 1575 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 TSC2P49815 1807 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 NHSL1Q5SYE7 1610 aa0.31□□□□□ -2.36
VPS29-205ENST00000548539 ITSN2Q9NZM3 1697 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 TROQ12816 1431 aaPredicted RBP0.3□□□□□ -2.36
VPS29-205ENST00000548539 EDC4Q6P2E9 1401 aaKnown RBP0.3□□□□□ -2.36
VPS29-205ENST00000548539 NSD3Q9BZ95 1437 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 RRBP1Q9P2E9 1410 aaKnown RBP0.3□□□□□ -2.36
VPS29-205ENST00000548539 ATP10BO94823 1461 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 POLA1P09884 1462 aaPredicted RBP0.3□□□□□ -2.36
VPS29-205ENST00000548539 CCDC141Q6ZP82 1450 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 MAGI2Q86UL8 1455 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 RALGAPBQ86X10 1494 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 MAPKBP1O60336 1514 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 MAGI3Q5TCQ9 1506 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 ABCA10Q8WWZ4 1543 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 UGGT2Q9NYU1 1516 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 PLXNB2O15031 1838 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 TRBV7-3A0A075B6L6 115 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 F8WEM9 126 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 SSSCA1O60232 199 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 LINC00032P0C843 101 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 HMGA1P17096 107 aaKnown RBP0.3□□□□□ -2.36
VPS29-205ENST00000548539 UBE2D3P61077 147 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 UBE2D2P62837 147 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 ADIRFQ15847 76 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 PMCHL1Q16048 86 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 MYOZ3Q8TDC0 251 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 LINC01600Q96MT4 127 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 MGST2Q99735 147 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 LINC00472Q9H8W2 130 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 CDC42SE2Q9NRR3 84 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 NDUFA4L2Q9NRX3 87 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 CRIPTQ9P021 101 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 DIP2AQ14689 1571 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 TMEM131LA2VDJ0 1609 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 NESP48681 1621 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 ZFHX3Q15911 3703 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 SCN7AQ01118 1682 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 TOPAZ1Q8N9V7 1692 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 PLIN4Q96Q06 1357 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 ANKRD17O75179 2603 aaKnown RBP0.3□□□□□ -2.36
VPS29-205ENST00000548539 RGPD1P0DJD0 1748 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 FMN2Q9NZ56 1722 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 UACAQ9BZF9 1416 aa0.3□□□□□ -2.36
VPS29-205ENST00000548539 FAT4Q6V0I7 4981 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 SCN11AQ9UI33 1791 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 ZMYM4Q5VZL5 1548 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.29□□□□□ -2.36
VPS29-205ENST00000548539 ABCA8O94911 1581 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 DIP2CQ9Y2E4 1556 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 KIF14Q15058 1648 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 MROH1Q8NDA8 1641 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 RAPGEF6Q8TEU7 1601 aa0.29□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms