RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 SPANXB1Q9NS25 103 aaPredicted RBP11.62□□□□□ -0.55
CHMP1A-204ENST00000547687 IGHV3-30-3P0DP02 117 aa11.61□□□□□ -0.55
CHMP1A-204ENST00000547687 GTF2H5Q6ZYL4 71 aa11.61□□□□□ -0.55
CHMP1A-204ENST00000547687 CSDC2Q9Y534 153 aaKnown RBP11.61□□□□□ -0.55
CHMP1A-204ENST00000547687 SMAGPQ0VAQ4 97 aa11.6□□□□□ -0.55
CHMP1A-204ENST00000547687 FAM222AQ5U5X8 452 aa11.6□□□□□ -0.55
CHMP1A-204ENST00000547687 LINC00612Q8N6U2 182 aa11.6□□□□□ -0.55
CHMP1A-204ENST00000547687 Q8NAQ8 132 aa11.6□□□□□ -0.55
CHMP1A-204ENST00000547687 LYSTQ99698 3801 aa11.6□□□□□ -0.55
CHMP1A-204ENST00000547687 IGHV1-58A0A0C4DH39 117 aa11.6□□□□□ -0.55
CHMP1A-204ENST00000547687 A0A1B0GWB2 263 aa11.6□□□□□ -0.55
CHMP1A-204ENST00000547687 FABP2P12104 132 aa11.6□□□□□ -0.55
CHMP1A-204ENST00000547687 MIFP14174 115 aa11.6□□□□□ -0.55
CHMP1A-204ENST00000547687 TIRAPP58753 221 aa11.6□□□□□ -0.55
CHMP1A-204ENST00000547687 TRAV8-3A0A0A6YYJ7 113 aa11.59□□□□□ -0.55
CHMP1A-204ENST00000547687 IGLL5B9A064 214 aa11.59□□□□□ -0.55
CHMP1A-204ENST00000547687 K7EP34 96 aa11.59□□□□□ -0.55
CHMP1A-204ENST00000547687 TMEM243Q9BU79 118 aa11.59□□□□□ -0.55
CHMP1A-204ENST00000547687 MUC7Q8TAX7 377 aa11.59□□□□□ -0.55
CHMP1A-204ENST00000547687 UBE2L6O14933 153 aa11.58□□□□□ -0.56
CHMP1A-204ENST00000547687 SPINK8P0C7L1 97 aa11.58□□□□□ -0.56
CHMP1A-204ENST00000547687 ZFAND6Q6FIF0 208 aa11.58□□□□□ -0.56
CHMP1A-204ENST00000547687 SPCS1Q9Y6A9 102 aa11.58□□□□□ -0.56
CHMP1A-204ENST00000547687 LYRM9A8MSI8 78 aa11.57□□□□□ -0.56
CHMP1A-204ENST00000547687 IGHV3-30P01768 117 aa11.57□□□□□ -0.56
CHMP1A-204ENST00000547687 IGHV3-30-5P0DP03 117 aa11.57□□□□□ -0.56
CHMP1A-204ENST00000547687 VSIG2Q96IQ7 327 aa11.57□□□□□ -0.56
CHMP1A-204ENST00000547687 CDC42SE2Q9NRR3 84 aa11.57□□□□□ -0.56
CHMP1A-204ENST00000547687 CDKN2A-AS1Q9UH64 79 aa11.57□□□□□ -0.56
CHMP1A-204ENST00000547687 IGLV5-45A0A087WSX0 123 aa11.56□□□□□ -0.56
CHMP1A-204ENST00000547687 COX6A2Q02221 97 aa11.56□□□□□ -0.56
CHMP1A-204ENST00000547687 C10orf126Q8N4M7 172 aa11.56□□□□□ -0.56
CHMP1A-204ENST00000547687 TMEM101Q96IK0 257 aa11.56□□□□□ -0.56
CHMP1A-204ENST00000547687 H7C423 109 aa11.55□□□□□ -0.56
CHMP1A-204ENST00000547687 CASC10Q5T4H9 136 aa11.55□□□□□ -0.56
CHMP1A-204ENST00000547687 LINC00242Q5T6M2 205 aa11.55□□□□□ -0.56
CHMP1A-204ENST00000547687 CELA1Q9UNI1 258 aa11.55□□□□□ -0.56
CHMP1A-204ENST00000547687 DYNC2H1Q8NCM8 4307 aaKnown RBP11.55□□□□□ -0.56
CHMP1A-204ENST00000547687 A0A0J9YXY3 114 aa11.55□□□□□ -0.56
CHMP1A-204ENST00000547687 HERVK_113P63121 156 aa11.55□□□□□ -0.56
CHMP1A-204ENST00000547687 FAM19A3Q7Z5A8 133 aa11.55□□□□□ -0.56
CHMP1A-204ENST00000547687 TRAV13-1A0A0B4J241 112 aa11.53□□□□□ -0.56
CHMP1A-204ENST00000547687 C3orf84H3BNL1 204 aa11.53□□□□□ -0.56
CHMP1A-204ENST00000547687 NDUFA12Q9UI09 145 aa11.53□□□□□ -0.56
CHMP1A-204ENST00000547687 SACSQ9NZJ4 4579 aa11.53□□□□□ -0.56
CHMP1A-204ENST00000547687 TRBV6-8A0A0A6YYG3 113 aa11.53□□□□□ -0.56
CHMP1A-204ENST00000547687 GAGE6Q13070 117 aa11.52□□□□□ -0.56
CHMP1A-204ENST00000547687 APOMO95445 188 aa11.52□□□□□ -0.57
CHMP1A-204ENST00000547687 DAD1P61803 113 aa11.52□□□□□ -0.57
CHMP1A-204ENST00000547687 SPART-AS1P0CW21 52 aa11.51□□□□□ -0.57
CHMP1A-204ENST00000547687 GYPEP15421 78 aa11.51□□□□□ -0.57
CHMP1A-204ENST00000547687 PGPEP1Q9NXJ5 209 aa11.51□□□□□ -0.57
CHMP1A-204ENST00000547687 PLECQ15149 4684 aaKnown RBP11.51□□□□□ -0.57
CHMP1A-204ENST00000547687 RYR2Q92736 4967 aa11.5□□□□□ -0.57
CHMP1A-204ENST00000547687 PRO0255Q9UI72 69 aa11.5□□□□□ -0.57
CHMP1A-204ENST00000547687 CFC1BP0CG36 223 aa11.5□□□□□ -0.57
CHMP1A-204ENST00000547687 CFC1P0CG37 223 aa11.5□□□□□ -0.57
CHMP1A-204ENST00000547687 MUSTN1Q8IVN3 82 aa11.5□□□□□ -0.57
CHMP1A-204ENST00000547687 ATP6V0E2Q8NHE4 81 aa11.5□□□□□ -0.57
CHMP1A-204ENST00000547687 CHCHD5Q9BSY4 110 aa11.5□□□□□ -0.57
CHMP1A-204ENST00000547687 RPL24P83731 157 aaKnown RBP11.48□□□□□ -0.57
CHMP1A-204ENST00000547687 LITAFQ99732 161 aa11.48□□□□□ -0.57
CHMP1A-204ENST00000547687 HYDINQ4G0P3 5121 aa11.48□□□□□ -0.57
CHMP1A-204ENST00000547687 IGLV5-39A0A0G2JS06 123 aa11.48□□□□□ -0.57
CHMP1A-204ENST00000547687 A4D1N5 150 aa11.48□□□□□ -0.57
CHMP1A-204ENST00000547687 A0A0J9YWU9 116 aa11.47□□□□□ -0.57
CHMP1A-204ENST00000547687 IGLV4-60A0A075B6I1 120 aa11.47□□□□□ -0.57
CHMP1A-204ENST00000547687 SMIM1B2RUZ4 78 aa11.47□□□□□ -0.57
CHMP1A-204ENST00000547687 NDUFA1O15239 70 aa11.47□□□□□ -0.57
CHMP1A-204ENST00000547687 PAX4O43316 350 aa11.47□□□□□ -0.57
CHMP1A-204ENST00000547687 TSPAN13O95857 204 aa11.47□□□□□ -0.57
CHMP1A-204ENST00000547687 ATP5G1P05496 136 aa11.47□□□□□ -0.57
CHMP1A-204ENST00000547687 ADAMTSL4-AS1Q5T5F5 129 aa11.46□□□□□ -0.57
CHMP1A-204ENST00000547687 PRSS2P07478 247 aa11.45□□□□□ -0.58
CHMP1A-204ENST00000547687 SPANXDQ9BXN6 97 aa11.45□□□□□ -0.58
CHMP1A-204ENST00000547687 SPANXCQ9NY87 97 aa11.45□□□□□ -0.58
CHMP1A-204ENST00000547687 PRO1854Q9UHT4 67 aa11.45□□□□□ -0.58
CHMP1A-204ENST00000547687 F5H768 121 aa11.45□□□□□ -0.58
CHMP1A-204ENST00000547687 TIMM17BO60830 172 aa11.44□□□□□ -0.58
CHMP1A-204ENST00000547687 HTN3P15516 51 aa11.44□□□□□ -0.58
CHMP1A-204ENST00000547687 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.43□□□□□ -0.58
CHMP1A-204ENST00000547687 IGKV3OR2-268A0A0C4DH90 116 aa11.43□□□□□ -0.58
CHMP1A-204ENST00000547687 TEX48A0A1B0GUV7 120 aa11.43□□□□□ -0.58
CHMP1A-204ENST00000547687 MIAQ16674 131 aa11.43□□□□□ -0.58
CHMP1A-204ENST00000547687 C11orf68Q9H3H3 251 aaKnown RBP11.43□□□□□ -0.58
CHMP1A-204ENST00000547687 A0A096LPF7 62 aa11.43□□□□□ -0.58
CHMP1A-204ENST00000547687 Q9H8V8 135 aa11.43□□□□□ -0.58
CHMP1A-204ENST00000547687 TRAV26-1A0A087WT03 109 aa11.42□□□□□ -0.58
CHMP1A-204ENST00000547687 A0A0B4J2C4 111 aa11.42□□□□□ -0.58
CHMP1A-204ENST00000547687 MTURNQ8N3F0 131 aa11.42□□□□□ -0.58
CHMP1A-204ENST00000547687 LOC107984156A0A0G2JMH3 177 aa11.42□□□□□ -0.58
CHMP1A-204ENST00000547687 TMEM262E9PQX1 116 aa11.42□□□□□ -0.58
CHMP1A-204ENST00000547687 H3BMG7 143 aa11.42□□□□□ -0.58
CHMP1A-204ENST00000547687 EIF4EBP3O60516 100 aaPredicted RBP11.42□□□□□ -0.58
CHMP1A-204ENST00000547687 CIRBPQ14011 172 aaKnown RBP11.42□□□□□ -0.58
CHMP1A-204ENST00000547687 ARL17AQ8IVW1 177 aa11.42□□□□□ -0.58
CHMP1A-204ENST00000547687 SFTA2Q6UW10 78 aa11.41□□□□□ -0.58
CHMP1A-204ENST00000547687 A0A1B0GUV1 79 aa11.39□□□□□ -0.59
CHMP1A-204ENST00000547687 IGHV3-33P01772 117 aa11.39□□□□□ -0.59
CHMP1A-204ENST00000547687 ZNF625Q96I27 306 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms