RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 RBMY1FQ15415 496 aaKnown RBP11.37□□□□□ -0.59
CUX1-211ENST00000546411 LINC00308Q8TCZ7 52 aa11.37□□□□□ -0.59
CUX1-211ENST00000546411 MT-ATP8P03928 68 aa11.37□□□□□ -0.59
CUX1-211ENST00000546411 UFSP1Q6NVU6 142 aa11.36□□□□□ -0.59
CUX1-211ENST00000546411 LINC00694P0DN24 101 aa11.36□□□□□ -0.59
CUX1-211ENST00000546411 HAMPP81172 84 aa11.36□□□□□ -0.59
CUX1-211ENST00000546411 UBE2DNLQ8IWF7 75 aa11.36□□□□□ -0.59
CUX1-211ENST00000546411 C1orf158Q8N1D5 194 aa11.36□□□□□ -0.59
CUX1-211ENST00000546411 LINC00526Q96FQ7 95 aa11.36□□□□□ -0.59
CUX1-211ENST00000546411 TRBV6-8A0A0A6YYG3 113 aa11.36□□□□□ -0.59
CUX1-211ENST00000546411 NCR3O14931 201 aa11.35□□□□□ -0.59
CUX1-211ENST00000546411 LY6G6DO95868 133 aa11.35□□□□□ -0.59
CUX1-211ENST00000546411 PSCAO43653 123 aa11.35□□□□□ -0.59
CUX1-211ENST00000546411 IGSF10Q6WRI0 2623 aa11.35□□□□□ -0.59
CUX1-211ENST00000546411 MAST4O15021 2626 aa11.34□□□□□ -0.59
CUX1-211ENST00000546411 B5MCH6 92 aa11.34□□□□□ -0.59
CUX1-211ENST00000546411 LINC00315P59091 139 aa11.34□□□□□ -0.59
CUX1-211ENST00000546411 FAM110AQ9BQ89 295 aa11.34□□□□□ -0.59
CUX1-211ENST00000546411 BRI3O95415 125 aa11.33□□□□□ -0.59
CUX1-211ENST00000546411 SPAG11BQ08648 103 aa11.33□□□□□ -0.59
CUX1-211ENST00000546411 MRPS36P82909 103 aaKnown RBP11.33□□□□□ -0.6
CUX1-211ENST00000546411 CAMK2N2Q96S95 79 aa11.33□□□□□ -0.6
CUX1-211ENST00000546411 DCHS1Q96JQ0 3298 aa11.32□□□□□ -0.6
CUX1-211ENST00000546411 UBE2D1P51668 147 aa11.32□□□□□ -0.6
CUX1-211ENST00000546411 IGKV3D-7A0A0C4DH55 119 aa11.32□□□□□ -0.6
CUX1-211ENST00000546411 LINC00242Q5T6M2 205 aa11.32□□□□□ -0.6
CUX1-211ENST00000546411 C1orf43Q9BWL3 253 aa11.32□□□□□ -0.6
CUX1-211ENST00000546411 TEP1Q99973 2627 aaKnown RBP11.32□□□□□ -0.6
CUX1-211ENST00000546411 TIRAPP58753 221 aa11.31□□□□□ -0.6
CUX1-211ENST00000546411 COX6A2Q02221 97 aa11.31□□□□□ -0.6
CUX1-211ENST00000546411 TRBV6-4A0A1B0GX49 114 aa11.31□□□□□ -0.6
CUX1-211ENST00000546411 NDUFA1O15239 70 aa11.31□□□□□ -0.6
CUX1-211ENST00000546411 GHRHP01286 108 aa11.31□□□□□ -0.6
CUX1-211ENST00000546411 ADAMTSL4-AS1Q5T5F5 129 aa11.31□□□□□ -0.6
CUX1-211ENST00000546411 NKAPP1Q8N9T2 125 aa11.31□□□□□ -0.6
CUX1-211ENST00000546411 CITED1Q99966 193 aa11.31□□□□□ -0.6
CUX1-211ENST00000546411 ORMDL1Q9P0S3 153 aa11.31□□□□□ -0.6
CUX1-211ENST00000546411 ITPR1Q14643 2758 aa11.31□□□□□ -0.6
CUX1-211ENST00000546411 CHCHD7Q9BUK0 85 aa11.3□□□□□ -0.6
CUX1-211ENST00000546411 H3BT86 120 aa11.3□□□□□ -0.6
CUX1-211ENST00000546411 SLPIP03973 132 aa11.3□□□□□ -0.6
CUX1-211ENST00000546411 HILS1P60008 231 aa11.3□□□□□ -0.6
CUX1-211ENST00000546411 SS18L2Q9UHA2 77 aa11.3□□□□□ -0.6
CUX1-211ENST00000546411 HIGD2BQ4VC39 106 aa11.3□□□□□ -0.6
CUX1-211ENST00000546411 REG3AQ06141 175 aa11.3□□□□□ -0.6
CUX1-211ENST00000546411 C9orf153Q5TBE3 101 aa11.29□□□□□ -0.6
CUX1-211ENST00000546411 SPANXCQ9NY87 97 aa11.29□□□□□ -0.6
CUX1-211ENST00000546411 DEFB105AQ8NG35 78 aa11.29□□□□□ -0.6
CUX1-211ENST00000546411 CHCHD10Q8WYQ3 142 aaPredicted RBP11.28□□□□□ -0.6
CUX1-211ENST00000546411 H0YGX0 51 aa11.28□□□□□ -0.6
CUX1-211ENST00000546411 UBE2D3P61077 147 aa11.28□□□□□ -0.6
CUX1-211ENST00000546411 UBE2D2P62837 147 aa11.28□□□□□ -0.6
CUX1-211ENST00000546411 CDC42SE2Q9NRR3 84 aa11.28□□□□□ -0.6
CUX1-211ENST00000546411 C14orf132Q9NPU4 83 aa11.28□□□□□ -0.6
CUX1-211ENST00000546411 UBL5Q9BZL1 73 aa11.27□□□□□ -0.6
CUX1-211ENST00000546411 RPL18AQ02543 176 aaKnown RBP11.27□□□□□ -0.61
CUX1-211ENST00000546411 DMDP11532 3685 aa11.27□□□□□ -0.61
CUX1-211ENST00000546411 FAM19A4Q96LR4 140 aa11.27□□□□□ -0.61
CUX1-211ENST00000546411 XAGE1AQ9HD64 81 aa11.26□□□□□ -0.61
CUX1-211ENST00000546411 IGLV4-60A0A075B6I1 120 aa11.26□□□□□ -0.61
CUX1-211ENST00000546411 TRBV30A0A0K0K1B3 111 aa11.26□□□□□ -0.61
CUX1-211ENST00000546411 FAM236AA0A1B0GUQ0 79 aa11.25□□□□□ -0.61
CUX1-211ENST00000546411 FAM236BA0A1B0GV22 79 aa11.25□□□□□ -0.61
CUX1-211ENST00000546411 TEX15Q9BXT5 2789 aa11.25□□□□□ -0.61
CUX1-211ENST00000546411 IGHV4-28A0A0C4DH34 117 aa11.25□□□□□ -0.61
CUX1-211ENST00000546411 IGLV1-51P01701 117 aa11.24□□□□□ -0.61
CUX1-211ENST00000546411 DSCR8Q96T75 97 aa11.24□□□□□ -0.61
CUX1-211ENST00000546411 SMIM1B2RUZ4 78 aa11.23□□□□□ -0.61
CUX1-211ENST00000546411 OXLD1Q5BKU9 147 aa11.23□□□□□ -0.61
CUX1-211ENST00000546411 AMELXQ99217 191 aa11.23□□□□□ -0.61
CUX1-211ENST00000546411 LAMA5O15230 3695 aa11.22□□□□□ -0.61
CUX1-211ENST00000546411 LINC00959A0A1B0GUT2 108 aa11.22□□□□□ -0.61
CUX1-211ENST00000546411 XGP55808 180 aa11.22□□□□□ -0.61
CUX1-211ENST00000546411 TMEM126AQ9H061 195 aa11.22□□□□□ -0.61
CUX1-211ENST00000546411 SPANXDQ9BXN6 97 aa11.21□□□□□ -0.61
CUX1-211ENST00000546411 SMIM20Q8N5G0 67 aa11.21□□□□□ -0.62
CUX1-211ENST00000546411 GCN1Q92616 2671 aaKnown RBP11.2□□□□□ -0.62
CUX1-211ENST00000546411 LYRM9A8MSI8 78 aa11.2□□□□□ -0.62
CUX1-211ENST00000546411 C11orf72Q8NBR9 251 aa11.2□□□□□ -0.62
CUX1-211ENST00000546411 RNF183Q96D59 192 aa11.2□□□□□ -0.62
CUX1-211ENST00000546411 LINC01546A6NGU7 62 aa11.2□□□□□ -0.62
CUX1-211ENST00000546411 PRB2P02812 416 aaPredicted RBP11.2□□□□□ -0.62
CUX1-211ENST00000546411 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.2□□□□□ -0.62
CUX1-211ENST00000546411 SMIM9A6NGZ8 99 aa11.19□□□□□ -0.62
CUX1-211ENST00000546411 IBA57-AS1B1ANH7 110 aa11.19□□□□□ -0.62
CUX1-211ENST00000546411 NBEAL2Q6ZNJ1 2754 aa11.19□□□□□ -0.62
CUX1-211ENST00000546411 BEAN1Q3B7T3 259 aa11.19□□□□□ -0.62
CUX1-211ENST00000546411 H7C423 109 aa11.18□□□□□ -0.62
CUX1-211ENST00000546411 LST1O00453 97 aa11.18□□□□□ -0.62
CUX1-211ENST00000546411 ACYP1P07311 99 aa11.17□□□□□ -0.62
CUX1-211ENST00000546411 C9orf116Q5BN46 136 aaPredicted RBP11.17□□□□□ -0.62
CUX1-211ENST00000546411 CCL18P55774 89 aa11.17□□□□□ -0.62
CUX1-211ENST00000546411 PRR3P79522 188 aaKnown RBP11.17□□□□□ -0.62
CUX1-211ENST00000546411 C6orf99Q4VX62 202 aa11.17□□□□□ -0.62
CUX1-211ENST00000546411 CXCL5P42830 114 aa11.16□□□□□ -0.62
CUX1-211ENST00000546411 FHL2Q14192 279 aa11.16□□□□□ -0.62
CUX1-211ENST00000546411 TIMM17BO60830 172 aa11.16□□□□□ -0.62
CUX1-211ENST00000546411 UBR5O95071 2799 aaPredicted RBP11.16□□□□□ -0.62
CUX1-211ENST00000546411 SMIM11BQ8TCY0 68 aa11.15□□□□□ -0.62
CUX1-211ENST00000546411 NTM-AS1Q6ZSK4 140 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms