RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 DAZ2Q13117 558 aaKnown RBP11.21□□□□□ -0.61
LDLR-204ENST00000545707 DAZ4Q86SG3 579 aaKnown RBP11.21□□□□□ -0.61
LDLR-204ENST00000545707 DAZ3Q9NR90 486 aaKnown RBP11.21□□□□□ -0.61
LDLR-204ENST00000545707 TRGV2A0A075B6R0 118 aa11.21□□□□□ -0.61
LDLR-204ENST00000545707 LINC01600Q96MT4 127 aa11.21□□□□□ -0.61
LDLR-204ENST00000545707 TRBV10-1A0A0K0K1A3 114 aa11.2□□□□□ -0.62
LDLR-204ENST00000545707 LRRC75A-AS1Q8N1F1 130 aa11.2□□□□□ -0.62
LDLR-204ENST00000545707 ANAPC13Q9BS18 74 aa11.2□□□□□ -0.62
LDLR-204ENST00000545707 TENM4Q6N022 2769 aa11.2□□□□□ -0.62
LDLR-204ENST00000545707 NBEAL2Q6ZNJ1 2754 aa11.2□□□□□ -0.62
LDLR-204ENST00000545707 H3BT86 120 aa11.2□□□□□ -0.62
LDLR-204ENST00000545707 C15orf53Q8NAA6 179 aa11.2□□□□□ -0.62
LDLR-204ENST00000545707 PLAC8L1A1L4L8 177 aa11.19□□□□□ -0.62
LDLR-204ENST00000545707 UBE2L6O14933 153 aa11.19□□□□□ -0.62
LDLR-204ENST00000545707 GAGE2BQ13066 116 aa11.19□□□□□ -0.62
LDLR-204ENST00000545707 GAGE2EQ4V326 116 aa11.19□□□□□ -0.62
LDLR-204ENST00000545707 TTC32Q5I0X7 151 aa11.19□□□□□ -0.62
LDLR-204ENST00000545707 GAGE2DQ9UEU5 116 aa11.19□□□□□ -0.62
LDLR-204ENST00000545707 CSDC2Q9Y534 153 aaKnown RBP11.19□□□□□ -0.62
LDLR-204ENST00000545707 TMEM243Q9BU79 118 aa11.18□□□□□ -0.62
LDLR-204ENST00000545707 FN1P02751 2386 aaKnown RBP11.18□□□□□ -0.62
LDLR-204ENST00000545707 GAGE6Q13070 117 aa11.18□□□□□ -0.62
LDLR-204ENST00000545707 FAM19A3Q7Z5A8 133 aa11.18□□□□□ -0.62
LDLR-204ENST00000545707 TMEM86BQ8N661 226 aa11.17□□□□□ -0.62
LDLR-204ENST00000545707 TOMM7Q9P0U1 55 aa11.17□□□□□ -0.62
LDLR-204ENST00000545707 NHLRC4P0CG21 123 aaPredicted RBP11.16□□□□□ -0.62
LDLR-204ENST00000545707 LINC01006Q8NI28 216 aa11.16□□□□□ -0.62
LDLR-204ENST00000545707 GCN1Q92616 2671 aaKnown RBP11.16□□□□□ -0.62
LDLR-204ENST00000545707 ITPR2Q14571 2701 aa11.15□□□□□ -0.62
LDLR-204ENST00000545707 IGLV4-60A0A075B6I1 120 aa11.15□□□□□ -0.62
LDLR-204ENST00000545707 TRGV4A0A0C4DH28 118 aa11.15□□□□□ -0.62
LDLR-204ENST00000545707 COX7A2LO14548 114 aa11.15□□□□□ -0.62
LDLR-204ENST00000545707 SHISA2Q6UWI4 295 aa11.15□□□□□ -0.63
LDLR-204ENST00000545707 FAM218AQ96MZ4 157 aa11.14□□□□□ -0.63
LDLR-204ENST00000545707 C19orf73Q9NVV2 129 aa11.14□□□□□ -0.63
LDLR-204ENST00000545707 C16orf74Q96GX8 76 aa11.13□□□□□ -0.63
LDLR-204ENST00000545707 NDUFV3P56181 108 aaKnown RBP11.13□□□□□ -0.63
LDLR-204ENST00000545707 MIR7-3HGQ8N6C7 128 aa11.12□□□□□ -0.63
LDLR-204ENST00000545707 CSNK1G2-AS1Q8NCQ2 148 aa11.12□□□□□ -0.63
LDLR-204ENST00000545707 PDZD2O15018 2839 aa11.11□□□□□ -0.63
LDLR-204ENST00000545707 HERV-K104P63124 156 aa11.11□□□□□ -0.63
LDLR-204ENST00000545707 COX7B2Q8TF08 81 aa11.11□□□□□ -0.63
LDLR-204ENST00000545707 CHCHD5Q9BSY4 110 aa11.11□□□□□ -0.63
LDLR-204ENST00000545707 ANK3Q12955 4377 aaKnown RBP11.11□□□□□ -0.63
LDLR-204ENST00000545707 TRBV6-4A0A1B0GX49 114 aa11.1□□□□□ -0.63
LDLR-204ENST00000545707 IGLV1-51P01701 117 aa11.1□□□□□ -0.63
LDLR-204ENST00000545707 DEFB130BP0DP73 79 aa11.1□□□□□ -0.63
LDLR-204ENST00000545707 DEFB130AP0DP74 79 aa11.1□□□□□ -0.63
LDLR-204ENST00000545707 FHL2Q14192 279 aa11.1□□□□□ -0.63
LDLR-204ENST00000545707 DEFB121Q5J5C9 76 aa11.1□□□□□ -0.63
LDLR-204ENST00000545707 C5orf38Q86SI9 138 aa11.1□□□□□ -0.63
LDLR-204ENST00000545707 Q9HAA7 133 aa11.1□□□□□ -0.63
LDLR-204ENST00000545707 LINC00337Q8N6G1 96 aa11.09□□□□□ -0.63
LDLR-204ENST00000545707 COPS9Q8WXC6 57 aa11.09□□□□□ -0.63
LDLR-204ENST00000545707 VWFP04275 2813 aa11.08□□□□□ -0.64
LDLR-204ENST00000545707 TRBV6-8A0A0A6YYG3 113 aa11.08□□□□□ -0.64
LDLR-204ENST00000545707 BAALC-AS2P0C853 105 aa11.08□□□□□ -0.64
LDLR-204ENST00000545707 LINC00158P58513 81 aa11.08□□□□□ -0.64
LDLR-204ENST00000545707 C11orf68Q9H3H3 251 aaKnown RBP11.08□□□□□ -0.64
LDLR-204ENST00000545707 IGKV2-28A0A075B6P5 120 aa11.08□□□□□ -0.64
LDLR-204ENST00000545707 B5MCH6 92 aa11.08□□□□□ -0.64
LDLR-204ENST00000545707 IGKV2D-28P01615 120 aa11.08□□□□□ -0.64
LDLR-204ENST00000545707 PFN2P35080 140 aa11.07□□□□□ -0.64
LDLR-204ENST00000545707 OVOL2Q9BRP0 275 aa11.07□□□□□ -0.64
LDLR-204ENST00000545707 C22orf24Q9Y442 160 aa11.07□□□□□ -0.64
LDLR-204ENST00000545707 KRTAP1-1Q07627 177 aa11.07□□□□□ -0.64
LDLR-204ENST00000545707 SND1-IT1Q9HBX3 110 aa11.07□□□□□ -0.64
LDLR-204ENST00000545707 IGHV3OR16-9A0A0B4J2B5 98 aa11.06□□□□□ -0.64
LDLR-204ENST00000545707 CCDC179H3BU77 68 aa11.06□□□□□ -0.64
LDLR-204ENST00000545707 CRPP02741 224 aa11.05□□□□□ -0.64
LDLR-204ENST00000545707 SS18L2Q9UHA2 77 aa11.05□□□□□ -0.64
LDLR-204ENST00000545707 A0A096LPF7 62 aa11.05□□□□□ -0.64
LDLR-204ENST00000545707 FAM240AA0A1B0GVK7 77 aa11.05□□□□□ -0.64
LDLR-204ENST00000545707 Q6Q795 121 aa11.05□□□□□ -0.64
LDLR-204ENST00000545707 CCL18P55774 89 aa11.04□□□□□ -0.64
LDLR-204ENST00000545707 TRACP01848 142 aa11.04□□□□□ -0.64
LDLR-204ENST00000545707 CMC4P56277 68 aaPredicted RBP11.04□□□□□ -0.64
LDLR-204ENST00000545707 CLPSL2Q6UWE3 100 aa11.04□□□□□ -0.64
LDLR-204ENST00000545707 SMCR5Q8TEV8 140 aa11.04□□□□□ -0.64
LDLR-204ENST00000545707 TRAV13-2A0A0B4J235 113 aa11.03□□□□□ -0.64
LDLR-204ENST00000545707 RNASE1P07998 156 aaKnown RBP11.03□□□□□ -0.64
LDLR-204ENST00000545707 SMIM11BQ8TCY0 68 aa11.03□□□□□ -0.64
LDLR-204ENST00000545707 A0A087WYN8 130 aa11.02□□□□□ -0.65
LDLR-204ENST00000545707 ATP5G1P05496 136 aa11.01□□□□□ -0.65
LDLR-204ENST00000545707 RPL28P46779 137 aaKnown RBP11.01□□□□□ -0.65
LDLR-204ENST00000545707 XCL1P47992 114 aa11.01□□□□□ -0.65
LDLR-204ENST00000545707 C16orf95Q9H693 158 aa11.01□□□□□ -0.65
LDLR-204ENST00000545707 LINC00959A0A1B0GUT2 108 aa11.01□□□□□ -0.65
LDLR-204ENST00000545707 A0A087WZ39 114 aa11□□□□□ -0.65
LDLR-204ENST00000545707 GYPEP15421 78 aa11□□□□□ -0.65
LDLR-204ENST00000545707 MRPL23Q16540 153 aaKnown RBP11□□□□□ -0.65
LDLR-204ENST00000545707 C9orf129Q5T035 196 aaKnown RBP11□□□□□ -0.65
LDLR-204ENST00000545707 PAX4O43316 350 aa10.99□□□□□ -0.65
LDLR-204ENST00000545707 FAM110AQ9BQ89 295 aa10.99□□□□□ -0.65
LDLR-204ENST00000545707 C6orf226Q5I0X4 101 aa10.99□□□□□ -0.65
LDLR-204ENST00000545707 SMR3AQ99954 134 aa10.99□□□□□ -0.65
LDLR-204ENST00000545707 KRTAP10-3P60369 221 aa10.98□□□□□ -0.65
LDLR-204ENST00000545707 OR13C6PQ8NH95 151 aa10.98□□□□□ -0.65
LDLR-204ENST00000545707 HIVEP2P31629 2446 aa10.98□□□□□ -0.65
LDLR-204ENST00000545707 PF4P02776 101 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms