RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SAA4P35542 130 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 ATP5EP56381 51 aaPredicted RBP3.83□□□□□ -1.8
USP28-213ENST00000544967 CFHR3Q02985 330 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 CIRBPQ14011 172 aaKnown RBP3.83□□□□□ -1.8
USP28-213ENST00000544967 MAPK1IP1LQ8NDC0 245 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 C9orf85Q96MD7 179 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 PLA2G2DQ9UNK4 145 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 NAV3Q8IVL0 2385 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 hADV29S1A0JD25 119 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 KLLNB2CW77 178 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 MGPP08493 103 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 NDUFA12Q9UI09 145 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 TRAV12-2A0A075B6T6 113 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 DNAJC9-AS1A6NH13 148 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 DAZ2Q13117 558 aaKnown RBP3.83□□□□□ -1.8
USP28-213ENST00000544967 PRR9Q5T870 116 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 DAZ4Q86SG3 579 aaKnown RBP3.83□□□□□ -1.8
USP28-213ENST00000544967 C1orf158Q8N1D5 194 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 DAZ1Q9NQZ3 744 aaKnown RBP3.83□□□□□ -1.8
USP28-213ENST00000544967 DAZ3Q9NR90 486 aaKnown RBP3.83□□□□□ -1.8
USP28-213ENST00000544967 LYPD5Q6UWN5 251 aa3.82□□□□□ -1.8
USP28-213ENST00000544967 MRPL55Q7Z7F7 128 aaKnown RBP3.82□□□□□ -1.8
USP28-213ENST00000544967 CLEC2BQ92478 149 aa3.82□□□□□ -1.8
USP28-213ENST00000544967 C22orf24Q9Y442 160 aa3.82□□□□□ -1.8
USP28-213ENST00000544967 H7C2G1 150 aa3.82□□□□□ -1.8
USP28-213ENST00000544967 M0QY20 66 aa3.82□□□□□ -1.8
USP28-213ENST00000544967 NPC2P61916 151 aa3.82□□□□□ -1.8
USP28-213ENST00000544967 DEFB112Q30KQ8 113 aa3.82□□□□□ -1.8
USP28-213ENST00000544967 FN1P02751 2386 aaKnown RBP3.82□□□□□ -1.8
USP28-213ENST00000544967 DNHD1Q96M86 4753 aa3.82□□□□□ -1.8
USP28-213ENST00000544967 TRAV8-3A0A0A6YYJ7 113 aa3.82□□□□□ -1.8
USP28-213ENST00000544967 A0A0U1RQV1 116 aa3.82□□□□□ -1.8
USP28-213ENST00000544967 APELAP0DMC3 54 aa3.82□□□□□ -1.8
USP28-213ENST00000544967 RPL28P46779 137 aaKnown RBP3.82□□□□□ -1.8
USP28-213ENST00000544967 KLK5Q9Y337 293 aaPredicted RBP3.82□□□□□ -1.8
USP28-213ENST00000544967 FAM223BA6NKX1 122 aa3.81□□□□□ -1.8
USP28-213ENST00000544967 BAALC-AS2P0C853 105 aa3.81□□□□□ -1.8
USP28-213ENST00000544967 RPL39P62891 51 aaKnown RBP3.81□□□□□ -1.8
USP28-213ENST00000544967 FAM223AQ8IWN6 122 aa3.81□□□□□ -1.8
USP28-213ENST00000544967 IGLV5-39A0A0G2JS06 123 aa3.81□□□□□ -1.8
USP28-213ENST00000544967 F5H697 171 aa3.81□□□□□ -1.8
USP28-213ENST00000544967 SYNJ2BPP57105 145 aa3.81□□□□□ -1.8
USP28-213ENST00000544967 ADAMTSL4-AS1Q5T5F5 129 aa3.81□□□□□ -1.8
USP28-213ENST00000544967 ZNF702PQ9H963 129 aa3.81□□□□□ -1.8
USP28-213ENST00000544967 FBN1P35555 2871 aaKnown RBP3.81□□□□□ -1.8
USP28-213ENST00000544967 TRAV13-2A0A0B4J235 113 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 H0YGX0 51 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 C5orf56Q8N8D9 126 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 UBE2D4Q9Y2X8 147 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 IGHV7-81A0A0B4J1V7 117 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 A0A0J9YXV3 536 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 IGHG2P01859 326 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 IGFL4Q6B9Z1 124 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 LINC00308Q8TCZ7 52 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 ARHGAP32A7KAX9 2087 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 SMIM26A0A096LP01 95 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 H3BUA1 57 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 NDUFA4O00483 81 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 NDUFC1O43677 76 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 DNAL4O96015 105 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 PROK1P58294 105 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 NDPQ00604 133 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 KRTAP24-1Q3LI83 254 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 SPG11Q96JI7 2443 aa3.8□□□□□ -1.8
USP28-213ENST00000544967 PFN2P35080 140 aa3.79□□□□□ -1.8
USP28-213ENST00000544967 PLA2G1BP04054 148 aaKnown RBP3.79□□□□□ -1.8
USP28-213ENST00000544967 C15orf32Q32M92 178 aa3.79□□□□□ -1.8
USP28-213ENST00000544967 Q8N9W7 124 aa3.79□□□□□ -1.8
USP28-213ENST00000544967 FAM104AQ969W3 186 aa3.79□□□□□ -1.8
USP28-213ENST00000544967 MOB4Q9Y3A3 225 aa3.79□□□□□ -1.8
USP28-213ENST00000544967 F8P00451 2351 aa3.79□□□□□ -1.8
USP28-213ENST00000544967 ADARB2-AS1A8MUL3 147 aa3.79□□□□□ -1.8
USP28-213ENST00000544967 PRSS2P07478 247 aa3.79□□□□□ -1.8
USP28-213ENST00000544967 KLKP1Q107X0 134 aa3.79□□□□□ -1.8
USP28-213ENST00000544967 IGHV3-16A0A0C4DH30 117 aa3.78□□□□□ -1.8
USP28-213ENST00000544967 IGLV1-40P01703 118 aa3.78□□□□□ -1.8
USP28-213ENST00000544967 IGHV4-59P01825 116 aa3.78□□□□□ -1.8
USP28-213ENST00000544967 CD28P10747 220 aa3.78□□□□□ -1.8
USP28-213ENST00000544967 BRD3OSQ6XYD6 125 aa3.78□□□□□ -1.8
USP28-213ENST00000544967 LINC00167Q96N53 147 aa3.78□□□□□ -1.8
USP28-213ENST00000544967 TRAV41A0A0B4J266 112 aa3.78□□□□□ -1.8
USP28-213ENST00000544967 C8orf87E5RJ46 101 aa3.78□□□□□ -1.8
USP28-213ENST00000544967 F6UB75 175 aa3.78□□□□□ -1.8
USP28-213ENST00000544967 FAM30AQ9NZY2 134 aa3.78□□□□□ -1.8
USP28-213ENST00000544967 Q6ZSV7 163 aa3.78□□□□□ -1.81
USP28-213ENST00000544967 COX7A1P24310 79 aa3.77□□□□□ -1.81
USP28-213ENST00000544967 DSCR8Q96T75 97 aa3.77□□□□□ -1.81
USP28-213ENST00000544967 CYSTM1Q9H1C7 97 aa3.77□□□□□ -1.81
USP28-213ENST00000544967 ABCA1O95477 2261 aa3.77□□□□□ -1.81
USP28-213ENST00000544967 TRAV7A0A075B6U4 112 aa3.77□□□□□ -1.81
USP28-213ENST00000544967 JMJD7-PLA2G4BH0Y9G9 81 aa3.77□□□□□ -1.81
USP28-213ENST00000544967 GNRH2O43555 120 aa3.77□□□□□ -1.81
USP28-213ENST00000544967 CCKP06307 115 aa3.77□□□□□ -1.81
USP28-213ENST00000544967 LAMTOR3Q9UHA4 124 aa3.77□□□□□ -1.81
USP28-213ENST00000544967 RBMY1BA6NDE4 496 aaKnown RBP3.76□□□□□ -1.81
USP28-213ENST00000544967 RBMY1EA6NEQ0 496 aaKnown RBP3.76□□□□□ -1.81
USP28-213ENST00000544967 RBMY1DP0C7P1 496 aaKnown RBP3.76□□□□□ -1.81
USP28-213ENST00000544967 RBMY1A1P0DJD3 496 aaKnown RBP3.76□□□□□ -1.81
USP28-213ENST00000544967 RBMY1CP0DJD4 496 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 KRTAP10-3P60369 221 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms