RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 FAM240AA0A1B0GVK7 77 aa13.73□□□□□ -0.21
VPS28-213ENST00000530983 CCL24O00175 119 aa13.73□□□□□ -0.21
VPS28-213ENST00000530983 DEFB121Q5J5C9 76 aa13.73□□□□□ -0.21
VPS28-213ENST00000530983 SETXQ7Z333 2677 aaKnown RBP13.72□□□□□ -0.21
VPS28-213ENST00000530983 CDC42SE2Q9NRR3 84 aa13.71□□□□□ -0.21
VPS28-213ENST00000530983 A0A0U1RRA0 63 aa13.7□□□□□ -0.22
VPS28-213ENST00000530983 ESM1Q9NQ30 184 aa13.7□□□□□ -0.22
VPS28-213ENST00000530983 NOTCH3Q9UM47 2321 aa13.7□□□□□ -0.22
VPS28-213ENST00000530983 F5H768 121 aa13.69□□□□□ -0.22
VPS28-213ENST00000530983 NOP10Q9NPE3 64 aaKnown RBP13.69□□□□□ -0.22
VPS28-213ENST00000530983 GIG44P09565 113 aaPredicted RBP13.69□□□□□ -0.22
VPS28-213ENST00000530983 SOSTDC1Q6X4U4 206 aa13.69□□□□□ -0.22
VPS28-213ENST00000530983 JMJD1CQ15652 2540 aa13.68□□□□□ -0.22
VPS28-213ENST00000530983 SMIM20Q8N5G0 67 aa13.68□□□□□ -0.22
VPS28-213ENST00000530983 C2CD3Q4AC94 2353 aa13.67□□□□□ -0.22
VPS28-213ENST00000530983 PLAC8L1A1L4L8 177 aa13.67□□□□□ -0.22
VPS28-213ENST00000530983 PRIMA1Q86XR5 153 aa13.67□□□□□ -0.22
VPS28-213ENST00000530983 FAM110AQ9BQ89 295 aa13.67□□□□□ -0.22
VPS28-213ENST00000530983 FLNAP21333 2647 aaKnown RBP13.66□□□□□ -0.22
VPS28-213ENST00000530983 SETD2Q9BYW2 2564 aaPredicted RBP13.66□□□□□ -0.22
VPS28-213ENST00000530983 MEIG1Q5JSS6 88 aa13.65□□□□□ -0.22
VPS28-213ENST00000530983 WFDC11Q8NEX6 87 aa13.65□□□□□ -0.22
VPS28-213ENST00000530983 CHCHD5Q9BSY4 110 aa13.65□□□□□ -0.22
VPS28-213ENST00000530983 WFDC10AQ9H1F0 79 aa13.65□□□□□ -0.22
VPS28-213ENST00000530983 HERV-K104P63124 156 aa13.64□□□□□ -0.23
VPS28-213ENST00000530983 TMEM243Q9BU79 118 aa13.63□□□□□ -0.23
VPS28-213ENST00000530983 CCDC168Q8NDH2 2452 aa13.63□□□□□ -0.23
VPS28-213ENST00000530983 TRBV7-7A0A0K0K1E9 115 aa13.63□□□□□ -0.23
VPS28-213ENST00000530983 LOC100131303A0A0U1RQF7 123 aa13.63□□□□□ -0.23
VPS28-213ENST00000530983 SHISA2Q6UWI4 295 aa13.63□□□□□ -0.23
VPS28-213ENST00000530983 COPS9Q8WXC6 57 aa13.63□□□□□ -0.23
VPS28-213ENST00000530983 UBE2L6O14933 153 aa13.62□□□□□ -0.23
VPS28-213ENST00000530983 C16orf74Q96GX8 76 aa13.62□□□□□ -0.23
VPS28-213ENST00000530983 COX7A2LO14548 114 aa13.62□□□□□ -0.23
VPS28-213ENST00000530983 TRGV2A0A075B6R0 118 aa13.61□□□□□ -0.23
VPS28-213ENST00000530983 C19orf73Q9NVV2 129 aa13.6□□□□□ -0.23
VPS28-213ENST00000530983 RPL35AP18077 110 aaKnown RBP13.59□□□□□ -0.23
VPS28-213ENST00000530983 LINC01006Q8NI28 216 aa13.59□□□□□ -0.23
VPS28-213ENST00000530983 TRBV6-4A0A1B0GX49 114 aa13.58□□□□□ -0.23
VPS28-213ENST00000530983 C3orf56Q8N813 242 aa13.58□□□□□ -0.23
VPS28-213ENST00000530983 CSNK1G2-AS1Q8NCQ2 148 aa13.58□□□□□ -0.23
VPS28-213ENST00000530983 PLA2G2AP14555 144 aa13.58□□□□□ -0.24
VPS28-213ENST00000530983 CMC4P56277 68 aaPredicted RBP13.58□□□□□ -0.24
VPS28-213ENST00000530983 ACYP1P07311 99 aa13.57□□□□□ -0.24
VPS28-213ENST00000530983 OVOL2Q9BRP0 275 aa13.57□□□□□ -0.24
VPS28-213ENST00000530983 IGLV1-51P01701 117 aa13.57□□□□□ -0.24
VPS28-213ENST00000530983 IMUPQ9GZP8 106 aa13.56□□□□□ -0.24
VPS28-213ENST00000530983 PPDPFQ9H3Y8 114 aa13.56□□□□□ -0.24
VPS28-213ENST00000530983 TRGV4A0A0C4DH28 118 aa13.55□□□□□ -0.24
VPS28-213ENST00000530983 FAM236AA0A1B0GUQ0 79 aa13.55□□□□□ -0.24
VPS28-213ENST00000530983 FAM236BA0A1B0GV22 79 aa13.55□□□□□ -0.24
VPS28-213ENST00000530983 SMCR5Q8TEV8 140 aa13.55□□□□□ -0.24
VPS28-213ENST00000530983 IGLV4-60A0A075B6I1 120 aa13.54□□□□□ -0.24
VPS28-213ENST00000530983 COX7B2Q8TF08 81 aa13.54□□□□□ -0.24
VPS28-213ENST00000530983 C16orf95Q9H693 158 aa13.53□□□□□ -0.24
VPS28-213ENST00000530983 IGKV3OR2-268A0A0C4DH90 116 aa13.52□□□□□ -0.24
VPS28-213ENST00000530983 KRTAP1-1Q07627 177 aa13.52□□□□□ -0.24
VPS28-213ENST00000530983 FHL2Q14192 279 aa13.52□□□□□ -0.24
VPS28-213ENST00000530983 TRBV6-8A0A0A6YYG3 113 aa13.52□□□□□ -0.25
VPS28-213ENST00000530983 TRACP01848 142 aa13.52□□□□□ -0.25
VPS28-213ENST00000530983 FAM218AQ96MZ4 157 aa13.52□□□□□ -0.25
VPS28-213ENST00000530983 RNASE1P07998 156 aaKnown RBP13.51□□□□□ -0.25
VPS28-213ENST00000530983 MIR7-3HGQ8N6C7 128 aa13.51□□□□□ -0.25
VPS28-213ENST00000530983 ACANP16112 2415 aa13.51□□□□□ -0.25
VPS28-213ENST00000530983 TOMM7Q9P0U1 55 aa13.51□□□□□ -0.25
VPS28-213ENST00000530983 TMEM126AQ9H061 195 aa13.5□□□□□ -0.25
VPS28-213ENST00000530983 MTORP42345 2549 aa13.5□□□□□ -0.25
VPS28-213ENST00000530983 IGHV3OR16-9A0A0B4J2B5 98 aa13.5□□□□□ -0.25
VPS28-213ENST00000530983 HIST2H2BCQ6DN03 193 aa13.5□□□□□ -0.25
VPS28-213ENST00000530983 LINC00337Q8N6G1 96 aa13.49□□□□□ -0.25
VPS28-213ENST00000530983 ANK3Q12955 4377 aaKnown RBP13.49□□□□□ -0.25
VPS28-213ENST00000530983 TENM4Q6N022 2769 aa13.49□□□□□ -0.25
VPS28-213ENST00000530983 PDZD2O15018 2839 aa13.49□□□□□ -0.25
VPS28-213ENST00000530983 IGKV2-28A0A075B6P5 120 aa13.48□□□□□ -0.25
VPS28-213ENST00000530983 IGKV2D-28P01615 120 aa13.48□□□□□ -0.25
VPS28-213ENST00000530983 PF4P02776 101 aa13.48□□□□□ -0.25
VPS28-213ENST00000530983 CFAP161Q6P656 301 aa13.48□□□□□ -0.25
VPS28-213ENST00000530983 SDIM1Q6ZPB5 146 aa13.48□□□□□ -0.25
VPS28-213ENST00000530983 C22orf24Q9Y442 160 aa13.48□□□□□ -0.25
VPS28-213ENST00000530983 TRAV13-2A0A0B4J235 113 aa13.48□□□□□ -0.25
VPS28-213ENST00000530983 FAM222AQ5U5X8 452 aa13.48□□□□□ -0.25
VPS28-213ENST00000530983 RPL28P46779 137 aaKnown RBP13.47□□□□□ -0.25
VPS28-213ENST00000530983 LINC00643Q86TS7 51 aa13.47□□□□□ -0.25
VPS28-213ENST00000530983 CRPP02741 224 aa13.47□□□□□ -0.25
VPS28-213ENST00000530983 SND1-IT1Q9HBX3 110 aa13.47□□□□□ -0.25
VPS28-213ENST00000530983 BAALC-AS2P0C853 105 aa13.46□□□□□ -0.25
VPS28-213ENST00000530983 A0A087WZ39 114 aa13.45□□□□□ -0.26
VPS28-213ENST00000530983 LINC00158P58513 81 aa13.45□□□□□ -0.26
VPS28-213ENST00000530983 C5orf38Q86SI9 138 aa13.44□□□□□ -0.26
VPS28-213ENST00000530983 CCL18P55774 89 aa13.43□□□□□ -0.26
VPS28-213ENST00000530983 ATP5G1P05496 136 aa13.42□□□□□ -0.26
VPS28-213ENST00000530983 DEFB130BP0DP73 79 aa13.42□□□□□ -0.26
VPS28-213ENST00000530983 DEFB130AP0DP74 79 aa13.42□□□□□ -0.26
VPS28-213ENST00000530983 C3orf22Q8N5N4 141 aa13.42□□□□□ -0.26
VPS28-213ENST00000530983 Q9HAA7 133 aa13.42□□□□□ -0.26
VPS28-213ENST00000530983 IBA57-AS1B1ANH7 110 aa13.42□□□□□ -0.26
VPS28-213ENST00000530983 C9orf153Q5TBE3 101 aa13.42□□□□□ -0.26
VPS28-213ENST00000530983 LINC00959A0A1B0GUT2 108 aa13.41□□□□□ -0.26
VPS28-213ENST00000530983 SMIM11BQ8TCY0 68 aa13.41□□□□□ -0.26
VPS28-213ENST00000530983 CXCL5P42830 114 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms