RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 PSMB2P49721 201 aa3.47□□□□□ -1.85
CD44-230ENST00000528922 ZNF56Q15929 161 aa3.47□□□□□ -1.85
CD44-230ENST00000528922 PRR30Q53SZ7 412 aaPredicted RBP3.47□□□□□ -1.85
CD44-230ENST00000528922 SBSPONQ8IVN8 264 aa3.47□□□□□ -1.85
CD44-230ENST00000528922 ZNF418Q8TF45 676 aaPredicted RBP3.47□□□□□ -1.85
CD44-230ENST00000528922 C9orf85Q96MD7 179 aa3.47□□□□□ -1.85
CD44-230ENST00000528922 ZNF256Q9Y2P7 627 aaPredicted RBP3.47□□□□□ -1.85
CD44-230ENST00000528922 TSSC4Q9Y5U2 329 aaPredicted RBP3.47□□□□□ -1.85
CD44-230ENST00000528922 IGHV3-66A0A0C4DH42 116 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 H3BT86 120 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 H3BUX3 64 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 IGHV3-30P01768 117 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 MSMBP08118 114 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 IGHV3-30-5P0DP03 117 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 CXCL6P80162 114 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 WFDC2Q14508 124 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 ZFAND6Q6FIF0 208 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 Q6Q795 121 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 SFTA2Q6UW10 78 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 C20orf203Q8NBC4 194 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 CCL19Q99731 98 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 LINC00467Q9BRT7 94 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 KIF25-AS1Q9Y6Z4 181 aa3.46□□□□□ -1.85
CD44-230ENST00000528922 IGHV3OR16-13A0A075B7E8 117 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 IGHV3OR16-8A0A075B7F1 116 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 IGHV3-74A0A0B4J1X5 117 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 FAM240AA0A1B0GVK7 77 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 TMEM223A0PJW6 202 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 K7ERJ3 54 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 M0QY20 66 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 SLC25A20O43772 301 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 SNCGO76070 127 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 LY6HO94772 140 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 TSPAN13O95857 204 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 CKS1BP61024 79 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 PRB3Q04118 309 aaPredicted RBP3.45□□□□□ -1.86
CD44-230ENST00000528922 MORN3Q6PF18 240 aaPredicted RBP3.45□□□□□ -1.86
CD44-230ENST00000528922 SH2D6Q7Z4S9 175 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 C10orf105Q8TEF2 133 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 DCANP1Q8TF63 244 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 RPL39LQ96EH5 51 aaKnown RBP3.45□□□□□ -1.86
CD44-230ENST00000528922 UBE2E2Q96LR5 201 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 NAA38Q9BRA0 125 aaKnown RBP3.45□□□□□ -1.86
CD44-230ENST00000528922 TIMM21Q9BVV7 248 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 GTSF1LQ9H1H1 148 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 PRO0461Q9UI25 63 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 PKD1L1Q8TDX9 2849 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 PRRC2AP48634 2157 aaKnown RBP3.45□□□□□ -1.86
CD44-230ENST00000528922 MUC4Q99102 2169 aa3.45□□□□□ -1.86
CD44-230ENST00000528922 IGLV4-69A0A075B6H9 119 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 IGHV3-49A0A0A0MS15 119 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 TRAV12-3A0A0B4J271 114 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 TRAV25A0A0B4J276 109 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 IGHV1-58A0A0C4DH39 117 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 TINCRA0A1B0GVN0 87 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 GNRH2O43555 120 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 SPINK8P0C7L1 97 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 PSMB8P28062 276 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 ATP5J2P56134 94 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 LINC00315P59091 139 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 MRPS36P82909 103 aaKnown RBP3.44□□□□□ -1.86
CD44-230ENST00000528922 FAM74A4Q5TZK3 123 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 ANKRD29Q8N6D5 301 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 CARD19Q96LW7 228 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 GEMIN7Q9H840 131 aaKnown RBP3.44□□□□□ -1.86
CD44-230ENST00000528922 FLNAP21333 2647 aaKnown RBP3.44□□□□□ -1.86
CD44-230ENST00000528922 COL6A5A8TX70 2615 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 TRBV10-1A0A0K0K1A3 114 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 TRBV10-2A0A0K0K1G8 114 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 IGHV3-33P01772 117 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 CRYGDP07320 174 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 DNAH10OSP0CZ25 163 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 CD28P10747 220 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 HERVK_113P63121 156 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 TTC32Q5I0X7 151 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 PRR9Q5T870 116 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 UNQ9165/PRO28630Q6UXU0 137 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 Q6ZUT4 128 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 AMELXQ99217 191 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 TTTY13Q9BZ97 58 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 IMUPQ9GZP8 106 aa3.44□□□□□ -1.86
CD44-230ENST00000528922 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.43□□□□□ -1.86
CD44-230ENST00000528922 TRAV26-1A0A087WT03 109 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 TRAV8-4A0A0B4J246 113 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 A8MTW9 85 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 A8MU10 97 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 C9JAW5 83 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 H3BMM0 161 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 TCL1BO95988 128 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 INSP01308 110 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 IGHV3-11P01762 117 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 ATP5G1P05496 136 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 ZNF22P17026 224 aaPredicted RBP3.43□□□□□ -1.86
CD44-230ENST00000528922 LY6EQ16553 131 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 LINC01620Q4KN68 170 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 AMTNQ6UX39 209 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 TMEM86BQ8N661 226 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 UBE2WQ96B02 151 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 ANAPC13Q9BS18 74 aa3.43□□□□□ -1.86
CD44-230ENST00000528922 NDUFA12Q9UI09 145 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms