RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 SMIM27A0A1W2PRY6 76 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 H7C2G1 150 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 K7EMI3 77 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 KRTAP5-8O75690 187 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 ARMS2P0C7Q2 107 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 C20orf166-AS1Q96NR2 134 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 TXNDC17Q9BRA2 123 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 C14orf132Q9NPU4 83 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 C22orf24Q9Y442 160 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 V9GYV3 84 aa1.87□□□□□ -2.11
CD44-229ENST00000528672 MUC22E2RYF6 1773 aaPredicted RBP1.87□□□□□ -2.11
CD44-229ENST00000528672 FAM208AQ9UK61 1670 aaKnown RBP1.86□□□□□ -2.11
CD44-229ENST00000528672 GBF1Q92538 1859 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 MUC6Q6W4X9 2439 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 LCTP09848 1927 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 A0A087WVE0 104 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 TRAV12-3A0A0B4J271 114 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 IGKV3D-7A0A0C4DH55 119 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 TRBV7-4A0A0J9YYF1 115 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 H3BPC8 53 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 IGHV3-33P01772 117 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 SERF2P84101 59 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 LYPD6Q86Y78 171 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 Q8TAT8 98 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 TIMM9Q9Y5J7 89 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 SNURFQ9Y675 71 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 KIAA1549LQ6ZVL6 1849 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 RREB1Q92766 1687 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 DOCK11Q5JSL3 2073 aa1.86□□□□□ -2.11
CD44-229ENST00000528672 ANKRD36A6QL64 1941 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 RANBP2P49792 3224 aaKnown RBP1.85□□□□□ -2.11
CD44-229ENST00000528672 TRIOBPQ9H2D6 2365 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 ZDBF2Q9HCK1 2354 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 IGLV10-54A0A075B6I4 117 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 TRAV23DV6A0A075B6W5 121 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 IGKV3D-11A0A0A0MRZ8 115 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 IGHV1-18A0A0C4DH31 117 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 CLPSL1A2RUU4 121 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 C11orf86A6NJI1 115 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 PRB2P02812 416 aaPredicted RBP1.85□□□□□ -2.11
CD44-229ENST00000528672 FCER1GP30273 86 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 LY6EQ16553 131 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 DEFB113Q30KQ7 82 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 LCE1CQ5T751 118 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 LCE1BQ5T7P3 118 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 CSAG1Q6PB30 78 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.85□□□□□ -2.11
CD44-229ENST00000528672 NDUFA4L2Q9NRX3 87 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 C3P01024 1663 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 NHSQ6T4R5 1651 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 QSER1Q2KHR3 1735 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 SETD2Q9BYW2 2564 aaPredicted RBP1.85□□□□□ -2.11
CD44-229ENST00000528672 MUC4Q99102 2169 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 SAMD9LQ8IVG5 1584 aa1.85□□□□□ -2.11
CD44-229ENST00000528672 MYO16Q9Y6X6 1858 aa1.84□□□□□ -2.11
CD44-229ENST00000528672 MKI67P46013 3256 aaKnown RBP1.84□□□□□ -2.11
CD44-229ENST00000528672 MUC3AQ02505 3323 aa1.84□□□□□ -2.11
CD44-229ENST00000528672 TRAV10A0A0B4J240 114 aa1.84□□□□□ -2.11
CD44-229ENST00000528672 A0A1W2PNM2 257 aa1.84□□□□□ -2.11
CD44-229ENST00000528672 D6R8Y8 96 aa1.84□□□□□ -2.11
CD44-229ENST00000528672 HMGN4O00479 90 aa1.84□□□□□ -2.11
CD44-229ENST00000528672 SAA2P0DJI9 122 aaPredicted RBP1.84□□□□□ -2.11
CD44-229ENST00000528672 KRTAP26-1Q6PEX3 210 aa1.84□□□□□ -2.11
CD44-229ENST00000528672 MUSTN1Q8IVN3 82 aa1.84□□□□□ -2.11
CD44-229ENST00000528672 Q8NAQ8 132 aa1.84□□□□□ -2.11
CD44-229ENST00000528672 TMEM254Q8TBM7 123 aa1.84□□□□□ -2.11
CD44-229ENST00000528672 TMEM263Q8WUH6 116 aaKnown RBP1.84□□□□□ -2.11
CD44-229ENST00000528672 EML5Q05BV3 1969 aa1.84□□□□□ -2.11
CD44-229ENST00000528672 SLIT1O75093 1534 aa1.84□□□□□ -2.11
CD44-229ENST00000528672 SPTBN4Q9H254 2564 aa1.84□□□□□ -2.12
CD44-229ENST00000528672 E9PCH4 1651 aa1.83□□□□□ -2.12
CD44-229ENST00000528672 CTXND1A0A1B0GTU2 59 aa1.83□□□□□ -2.12
CD44-229ENST00000528672 ODF3BA8MYP8 253 aa1.83□□□□□ -2.12
CD44-229ENST00000528672 J3QRE1 110 aa1.83□□□□□ -2.12
CD44-229ENST00000528672 KRTAP13-2Q52LG2 175 aa1.83□□□□□ -2.12
CD44-229ENST00000528672 PRR9Q5T870 116 aa1.83□□□□□ -2.12
CD44-229ENST00000528672 IGFL1Q6UW32 110 aa1.83□□□□□ -2.12
CD44-229ENST00000528672 PRR15LQ9BU68 103 aa1.83□□□□□ -2.12
CD44-229ENST00000528672 R4GN34 69 aa1.83□□□□□ -2.12
CD44-229ENST00000528672 COL4A4P53420 1690 aaPredicted RBP1.83□□□□□ -2.12
CD44-229ENST00000528672 SCN3AQ9NY46 2000 aa1.83□□□□□ -2.12
CD44-229ENST00000528672 LY75O60449 1722 aa1.83□□□□□ -2.12
CD44-229ENST00000528672 NAV3Q8IVL0 2385 aa1.83□□□□□ -2.12
CD44-229ENST00000528672 PAPPA2Q9BXP8 1791 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 UBR3Q6ZT12 1888 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 TRBV6-5A0A0K0K1A5 114 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 A0A1B0GU33 70 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 IGHV3-30P01768 117 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 IGHV3-30-5P0DP03 117 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 ELOF1P60002 83 aaKnown RBP1.82□□□□□ -2.12
CD44-229ENST00000528672 KRTAP25-1Q3LHN0 102 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 KRTAP21-3Q3LHN1 58 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 Q6ZS52 159 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 WFDC6Q9BQY6 131 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 PLAC8Q9NZF1 115 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 FAM208BQ5VWN6 2430 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 MYOFQ9NZM1 2061 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.82□□□□□ -2.12
CD44-229ENST00000528672 SIP14410 1827 aa1.82□□□□□ -2.12
CD44-229ENST00000528672 LAMA4Q16363 1823 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms