RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 IGLV4-60A0A075B6I1 120 aa5□□□□□ -1.61
CD44-228ENST00000528455 IGLV4-3A0A075B6K6 122 aa5□□□□□ -1.61
CD44-228ENST00000528455 TRAV12-1A0A0B4J245 112 aa5□□□□□ -1.61
CD44-228ENST00000528455 IBA57-AS1B1ANH7 110 aa5□□□□□ -1.61
CD44-228ENST00000528455 PRSS1P07477 247 aa5□□□□□ -1.61
CD44-228ENST00000528455 PMVKQ15126 192 aa5□□□□□ -1.61
CD44-228ENST00000528455 MPV17L2Q567V2 206 aa5□□□□□ -1.61
CD44-228ENST00000528455 Q6ZN92 141 aa5□□□□□ -1.61
CD44-228ENST00000528455 HIST1H2BLQ99880 126 aa5□□□□□ -1.61
CD44-228ENST00000528455 OPRPNQ99935 248 aaPredicted RBP5□□□□□ -1.61
CD44-228ENST00000528455 MAP1LC3CQ9BXW4 147 aa5□□□□□ -1.61
CD44-228ENST00000528455 CST9LQ9H4G1 147 aa5□□□□□ -1.61
CD44-228ENST00000528455 PRR34Q9NV39 138 aa5□□□□□ -1.61
CD44-228ENST00000528455 BIRC6Q9NR09 4857 aa5□□□□□ -1.61
CD44-228ENST00000528455 VPS13DQ5THJ4 4388 aa4.99□□□□□ -1.61
CD44-228ENST00000528455 TRAV8-4A0A0B4J246 113 aa4.99□□□□□ -1.61
CD44-228ENST00000528455 ANGP03950 147 aaKnown RBP4.99□□□□□ -1.61
CD44-228ENST00000528455 TEX43Q6ZNM6 134 aa4.99□□□□□ -1.61
CD44-228ENST00000528455 FAM19A3Q7Z5A8 133 aa4.99□□□□□ -1.61
CD44-228ENST00000528455 LINC00269Q8N2A0 174 aa4.99□□□□□ -1.61
CD44-228ENST00000528455 C10orf126Q8N4M7 172 aa4.99□□□□□ -1.61
CD44-228ENST00000528455 Q8N976 141 aa4.99□□□□□ -1.61
CD44-228ENST00000528455 BAALCQ8WXS3 180 aa4.99□□□□□ -1.61
CD44-228ENST00000528455 KLK12Q9UKR0 248 aa4.99□□□□□ -1.61
CD44-228ENST00000528455 TRAV8-3A0A0A6YYJ7 113 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 IFITM10A6NMD0 228 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 SYS1-DBNDD2H3BUS1 97 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 PRYO14603 147 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 IGHV3-30P01768 117 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 IGHV3-33P01772 117 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 IGHV3-30-3P0DP02 117 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 IGHV3-30-5P0DP03 117 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 AKR1D1P51857 326 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 SEC11AP67812 179 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 REG3AQ06141 175 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 SS18Q15532 418 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 MIAQ16674 131 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 PET117Q6UWS5 81 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 ENHOQ6UWT2 76 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 LINC00173Q6ZV60 143 aa4.98□□□□□ -1.61
CD44-228ENST00000528455 LINC00959A0A1B0GUT2 108 aa4.97□□□□□ -1.61
CD44-228ENST00000528455 C3orf79P0CE67 100 aa4.97□□□□□ -1.61
CD44-228ENST00000528455 TTC32Q5I0X7 151 aa4.97□□□□□ -1.61
CD44-228ENST00000528455 C2orf88Q9BSF0 95 aa4.97□□□□□ -1.61
CD44-228ENST00000528455 FRAS1Q86XX4 4008 aa4.96□□□□□ -1.61
CD44-228ENST00000528455 DNAH10Q8IVF4 4471 aa4.96□□□□□ -1.62
CD44-228ENST00000528455 NBDYA0A0U1RRE5 68 aa4.96□□□□□ -1.62
CD44-228ENST00000528455 TINCRA0A1B0GVN0 87 aa4.96□□□□□ -1.62
CD44-228ENST00000528455 UBE2D1P51668 147 aa4.96□□□□□ -1.62
CD44-228ENST00000528455 Q6ZUT4 128 aa4.96□□□□□ -1.62
CD44-228ENST00000528455 OR10D4PQ8NGN7 298 aa4.96□□□□□ -1.62
CD44-228ENST00000528455 CHTOPQ9Y3Y2 248 aaKnown RBP4.96□□□□□ -1.62
CD44-228ENST00000528455 DNAH6Q9C0G6 4158 aa4.96□□□□□ -1.62
CD44-228ENST00000528455 F8VRH5 84 aa4.95□□□□□ -1.62
CD44-228ENST00000528455 CRPP02741 224 aa4.95□□□□□ -1.62
CD44-228ENST00000528455 KRTDAPP60985 99 aa4.95□□□□□ -1.62
CD44-228ENST00000528455 HERVK_113P63121 156 aa4.95□□□□□ -1.62
CD44-228ENST00000528455 RNASE13Q5GAN3 156 aaKnown RBP4.95□□□□□ -1.62
CD44-228ENST00000528455 LINC00242Q5T6M2 205 aa4.95□□□□□ -1.62
CD44-228ENST00000528455 ZC2HC1BQ5TFG8 222 aa4.95□□□□□ -1.62
CD44-228ENST00000528455 LINC01545Q5VT33 79 aa4.95□□□□□ -1.62
CD44-228ENST00000528455 NFE4Q86UQ8 179 aa4.95□□□□□ -1.62
CD44-228ENST00000528455 UBE2WQ96B02 151 aa4.95□□□□□ -1.62
CD44-228ENST00000528455 RMI2Q96E14 147 aa4.95□□□□□ -1.62
CD44-228ENST00000528455 TM2D2Q9BX73 214 aa4.95□□□□□ -1.62
CD44-228ENST00000528455 TRAV13-1A0A0B4J241 112 aa4.94□□□□□ -1.62
CD44-228ENST00000528455 IGLC3P0DOY3 106 aa4.94□□□□□ -1.62
CD44-228ENST00000528455 COX6A2Q02221 97 aa4.94□□□□□ -1.62
CD44-228ENST00000528455 JOSD1Q15040 202 aaPredicted RBP4.94□□□□□ -1.62
CD44-228ENST00000528455 CD164L2Q6UWJ8 174 aa4.94□□□□□ -1.62
CD44-228ENST00000528455 Q6ZR54 194 aa4.94□□□□□ -1.62
CD44-228ENST00000528455 LINC01561Q8N1V8 128 aa4.94□□□□□ -1.62
CD44-228ENST00000528455 GEMIN7Q9H840 131 aaKnown RBP4.94□□□□□ -1.62
CD44-228ENST00000528455 MRPL35Q9NZE8 188 aaKnown RBP4.94□□□□□ -1.62
CD44-228ENST00000528455 IGLV4-69A0A075B6H9 119 aa4.93□□□□□ -1.62
CD44-228ENST00000528455 IGLV5-45A0A087WSX0 123 aa4.93□□□□□ -1.62
CD44-228ENST00000528455 IGHV3OR16-9A0A0B4J2B5 98 aa4.93□□□□□ -1.62
CD44-228ENST00000528455 IGKV3OR2-268A0A0C4DH90 116 aa4.93□□□□□ -1.62
CD44-228ENST00000528455 A0A0J9YXV3 536 aa4.93□□□□□ -1.62
CD44-228ENST00000528455 LOC105371267A0A1B0GV96 52 aa4.93□□□□□ -1.62
CD44-228ENST00000528455 C20orf202A1L168 122 aa4.93□□□□□ -1.62
CD44-228ENST00000528455 H0Y8G0 127 aa4.93□□□□□ -1.62
CD44-228ENST00000528455 DPM2O94777 84 aa4.93□□□□□ -1.62
CD44-228ENST00000528455 IGKCP01834 107 aa4.93□□□□□ -1.62
CD44-228ENST00000528455 PLNP26678 52 aa4.93□□□□□ -1.62
CD44-228ENST00000528455 KRTAP26-1Q6PEX3 210 aa4.93□□□□□ -1.62
CD44-228ENST00000528455 CHCHD10Q8WYQ3 142 aaPredicted RBP4.93□□□□□ -1.62
CD44-228ENST00000528455 IGKV2D-24A0A075B6R9 120 aa4.92□□□□□ -1.62
CD44-228ENST00000528455 A0A087WZ39 114 aa4.92□□□□□ -1.62
CD44-228ENST00000528455 SCGB1D1O95968 90 aa4.92□□□□□ -1.62
CD44-228ENST00000528455 KRTAP1-5Q9BYS1 174 aa4.92□□□□□ -1.62
CD44-228ENST00000528455 IGLV10-54A0A075B6I4 117 aa4.91□□□□□ -1.62
CD44-228ENST00000528455 C11orf86A6NJI1 115 aa4.91□□□□□ -1.62
CD44-228ENST00000528455 H3BRM9 83 aa4.91□□□□□ -1.62
CD44-228ENST00000528455 XCL1P47992 114 aa4.91□□□□□ -1.62
CD44-228ENST00000528455 CLPSL2Q6UWE3 100 aa4.91□□□□□ -1.62
CD44-228ENST00000528455 LINC00336Q6ZUF6 198 aa4.91□□□□□ -1.62
CD44-228ENST00000528455 Q9HAA7 133 aa4.91□□□□□ -1.62
CD44-228ENST00000528455 CDKN2A-AS1Q9UH64 79 aa4.91□□□□□ -1.62
CD44-228ENST00000528455 M0R2N4 97 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms