RNA–Protein interactions for RNA: ENST00000515710.1

TRIO-223, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 3

Gene TRIO, Length 1,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-223	ENST00000515710		A0A1B0GUV1	79 aa		13.93	□□□□□ -0.18
TRIO-223	ENST00000515710	MYMX	A0A1B0GTQ4	84 aa		13.92	□□□□□ -0.18
TRIO-223	ENST00000515710	TMEM262	E9PQX1	116 aa		13.92	□□□□□ -0.18
TRIO-223	ENST00000515710	LEPROT	O15243	131 aa		13.92	□□□□□ -0.18
TRIO-223	ENST00000515710	HERVK_113	P63121	156 aa		13.92	□□□□□ -0.18
TRIO-223	ENST00000515710	IGLV4-60	A0A075B6I1	120 aa		13.92	□□□□□ -0.18
TRIO-223	ENST00000515710	NANOS2	P60321	138 aa	Known RBP	13.92	□□□□□ -0.18
TRIO-223	ENST00000515710	IGLV5-45	A0A087WSX0	123 aa		13.91	□□□□□ -0.18
TRIO-223	ENST00000515710		F8W1H4	67 aa		13.91	□□□□□ -0.18
TRIO-223	ENST00000515710	LINC00242	Q5T6M2	205 aa		13.91	□□□□□ -0.18
TRIO-223	ENST00000515710	TRAV13-1	A0A0B4J241	112 aa		13.9	□□□□□ -0.18
TRIO-223	ENST00000515710	LELP1	Q5T871	98 aa		13.9	□□□□□ -0.18
TRIO-223	ENST00000515710	PLEKHB2	Q96CS7	222 aa		13.9	□□□□□ -0.18
TRIO-223	ENST00000515710	TM2D2	Q9BX73	214 aa		13.9	□□□□□ -0.18
TRIO-223	ENST00000515710	DEFB131B	A0A096LNP1	70 aa		13.89	□□□□□ -0.19
TRIO-223	ENST00000515710		J3QQQ9	107 aa		13.89	□□□□□ -0.19
TRIO-223	ENST00000515710	ZNF815P	A8K554	130 aa		13.88	□□□□□ -0.19
TRIO-223	ENST00000515710	LGALS3	P17931	250 aa	Known RBP	13.88	□□□□□ -0.19
TRIO-223	ENST00000515710	COX6A2	Q02221	97 aa		13.88	□□□□□ -0.19
TRIO-223	ENST00000515710	CDKN2A-AS1	Q9UH64	79 aa		13.88	□□□□□ -0.19
TRIO-223	ENST00000515710	IGHV1-58	A0A0C4DH39	117 aa		13.87	□□□□□ -0.19
TRIO-223	ENST00000515710	TAL2	Q16559	108 aa		13.87	□□□□□ -0.19
TRIO-223	ENST00000515710	SPANXB1	Q9NS25	103 aa	Predicted RBP	13.87	□□□□□ -0.19
TRIO-223	ENST00000515710	LYPD5	Q6UWN5	251 aa		13.86	□□□□□ -0.19
TRIO-223	ENST00000515710	GAGE12H	A6NDE8	117 aa		13.86	□□□□□ -0.19
TRIO-223	ENST00000515710	TRAV10	A0A0B4J240	114 aa		13.85	□□□□□ -0.19
TRIO-223	ENST00000515710	IGHV3-30-3	P0DP02	117 aa		13.85	□□□□□ -0.19
TRIO-223	ENST00000515710	TSPEAR-AS2	P59090	65 aa		13.85	□□□□□ -0.19
TRIO-223	ENST00000515710	RPL24	P83731	157 aa	Known RBP	13.85	□□□□□ -0.19
TRIO-223	ENST00000515710	RAB37	Q96AX2	223 aa		13.84	□□□□□ -0.19
TRIO-223	ENST00000515710	B9D2	Q9BPU9	175 aa		13.84	□□□□□ -0.19
TRIO-223	ENST00000515710	IGHV3-64	A0A075B6Q5	118 aa		13.84	□□□□□ -0.19
TRIO-223	ENST00000515710	SPINK8	P0C7L1	97 aa		13.84	□□□□□ -0.19
TRIO-223	ENST00000515710	MTURN	Q8N3F0	131 aa		13.83	□□□□□ -0.2
TRIO-223	ENST00000515710	NAA38	Q9BRA0	125 aa	Known RBP	13.83	□□□□□ -0.2
TRIO-223	ENST00000515710	TRAV8-3	A0A0A6YYJ7	113 aa		13.82	□□□□□ -0.2
TRIO-223	ENST00000515710	IGKV3OR2-268	A0A0C4DH90	116 aa		13.82	□□□□□ -0.2
TRIO-223	ENST00000515710	LINC00959	A0A1B0GUT2	108 aa		13.82	□□□□□ -0.2
TRIO-223	ENST00000515710	FXYD2	P54710	66 aa		13.82	□□□□□ -0.2
TRIO-223	ENST00000515710	KRTAP21-3	Q3LHN1	58 aa		13.82	□□□□□ -0.2
TRIO-223	ENST00000515710	SCGB1D4	Q6XE38	83 aa		13.82	□□□□□ -0.2
TRIO-223	ENST00000515710	SS18	Q15532	418 aa		13.8	□□□□□ -0.2
TRIO-223	ENST00000515710	CEND1	Q8N111	149 aa		13.8	□□□□□ -0.2
TRIO-223	ENST00000515710	NOTCH1	P46531	2555 aa		13.79	□□□□□ -0.2
TRIO-223	ENST00000515710	IGLV5-39	A0A0G2JS06	123 aa		13.79	□□□□□ -0.2
TRIO-223	ENST00000515710	GCSH	P23434	173 aa		13.79	□□□□□ -0.2
TRIO-223	ENST00000515710		A0A1B0GWB2	263 aa		13.78	□□□□□ -0.2
TRIO-223	ENST00000515710	SMIM1	B2RUZ4	78 aa		13.78	□□□□□ -0.2
TRIO-223	ENST00000515710	IGLL5	B9A064	214 aa		13.78	□□□□□ -0.2
TRIO-223	ENST00000515710	ANG	P03950	147 aa	Known RBP	13.78	□□□□□ -0.2
TRIO-223	ENST00000515710	C15orf53	Q8NAA6	179 aa		13.78	□□□□□ -0.2
TRIO-223	ENST00000515710	IGHV3OR16-9	A0A0B4J2B5	98 aa		13.76	□□□□□ -0.21
TRIO-223	ENST00000515710	ZFAND6	Q6FIF0	208 aa		13.76	□□□□□ -0.21
TRIO-223	ENST00000515710	LINC00269	Q8N2A0	174 aa		13.76	□□□□□ -0.21
TRIO-223	ENST00000515710	HIST1H4G	Q99525	98 aa		13.76	□□□□□ -0.21
TRIO-223	ENST00000515710	NDUFA12	Q9UI09	145 aa		13.76	□□□□□ -0.21
TRIO-223	ENST00000515710	PRO0461	Q9UI25	63 aa		13.76	□□□□□ -0.21
TRIO-223	ENST00000515710	MGAM2	Q2M2H8	2515 aa		13.75	□□□□□ -0.21
TRIO-223	ENST00000515710	ESRG	Q1W209	222 aa		13.75	□□□□□ -0.21
TRIO-223	ENST00000515710	NHLRC4	P0CG21	123 aa	Predicted RBP	13.74	□□□□□ -0.21
TRIO-223	ENST00000515710	REG3A	Q06141	175 aa		13.74	□□□□□ -0.21
TRIO-223	ENST00000515710	HUWE1	Q7Z6Z7	4374 aa	Known RBP	13.74	□□□□□ -0.21
TRIO-223	ENST00000515710	NBEAL1	Q6ZS30	2694 aa		13.74	□□□□□ -0.21
TRIO-223	ENST00000515710		A0A087WZ39	114 aa		13.73	□□□□□ -0.21
TRIO-223	ENST00000515710	CKS1B	P61024	79 aa		13.73	□□□□□ -0.21
TRIO-223	ENST00000515710	WFDC2	Q14508	124 aa		13.73	□□□□□ -0.21
TRIO-223	ENST00000515710		Q8N3U1	123 aa		13.73	□□□□□ -0.21
TRIO-223	ENST00000515710	CLPSL2	Q6UWE3	100 aa		13.72	□□□□□ -0.21
TRIO-223	ENST00000515710	C10orf126	Q8N4M7	172 aa		13.72	□□□□□ -0.21
TRIO-223	ENST00000515710		A0A0J9YXY3	114 aa		13.72	□□□□□ -0.21
TRIO-223	ENST00000515710	SRSF9	Q13242	221 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
TRIO-223	ENST00000515710	LINC01561	Q8N1V8	128 aa		13.72	□□□□□ -0.21
TRIO-223	ENST00000515710	NHP2	Q9NX24	153 aa	Known RBP	13.72	□□□□□ -0.21
TRIO-223	ENST00000515710	NDUFA1	O15239	70 aa		13.71	□□□□□ -0.21
TRIO-223	ENST00000515710	XCL1	P47992	114 aa		13.7	□□□□□ -0.22
TRIO-223	ENST00000515710	PRR34	Q9NV39	138 aa		13.7	□□□□□ -0.22
TRIO-223	ENST00000515710		K7ERJ3	54 aa		13.7	□□□□□ -0.22
TRIO-223	ENST00000515710	CD164L2	Q6UWJ8	174 aa		13.7	□□□□□ -0.22
TRIO-223	ENST00000515710	WFDC10B	Q8IUB3	73 aa		13.7	□□□□□ -0.22
TRIO-223	ENST00000515710	TENM3	Q9P273	2699 aa		13.69	□□□□□ -0.22
TRIO-223	ENST00000515710	C5orf38	Q86SI9	138 aa		13.69	□□□□□ -0.22
TRIO-223	ENST00000515710	KLK12	Q9UKR0	248 aa		13.69	□□□□□ -0.22
TRIO-223	ENST00000515710	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	13.68	□□□□□ -0.22
TRIO-223	ENST00000515710	IGHV3-30	P01768	117 aa		13.68	□□□□□ -0.22
TRIO-223	ENST00000515710	IGHV3-33	P01772	117 aa		13.68	□□□□□ -0.22
TRIO-223	ENST00000515710	IGHV3-30-5	P0DP03	117 aa		13.68	□□□□□ -0.22
TRIO-223	ENST00000515710	ETDB	Q3ZM63	59 aa		13.67	□□□□□ -0.22
TRIO-223	ENST00000515710	COX7B2	Q8TF08	81 aa		13.67	□□□□□ -0.22
TRIO-223	ENST00000515710		Q9H8V8	135 aa		13.66	□□□□□ -0.22
TRIO-223	ENST00000515710		H3BMG7	143 aa		13.66	□□□□□ -0.22
TRIO-223	ENST00000515710	TIMM17B	O60830	172 aa		13.66	□□□□□ -0.22
TRIO-223	ENST00000515710	HERV-K104	P63124	156 aa		13.66	□□□□□ -0.22
TRIO-223	ENST00000515710	ENHO	Q6UWT2	76 aa		13.65	□□□□□ -0.22
TRIO-223	ENST00000515710	ZNF625	Q96I27	306 aa	Predicted RBP	13.65	□□□□□ -0.22
TRIO-223	ENST00000515710	TRAV8-4	A0A0B4J246	113 aa		13.64	□□□□□ -0.23
TRIO-223	ENST00000515710	CRP	P02741	224 aa		13.64	□□□□□ -0.23
TRIO-223	ENST00000515710	LINC01556	Q5JQF7	62 aa		13.64	□□□□□ -0.23
TRIO-223	ENST00000515710		A6NJY4	79 aa		13.64	□□□□□ -0.23
TRIO-223	ENST00000515710	COX7A2L	O14548	114 aa		13.64	□□□□□ -0.23
TRIO-223	ENST00000515710	IGLV10-54	A0A075B6I4	117 aa		13.63	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms